BAC Information

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BAC

Clone NameB6Ng01-204B11
Chromosome8 (Build37)
Map Location 109,081,606 - 109,249,497
singlet/doubletdoublet
Overlap geneLOC100042734, Cdh1, Tmco7
Upstream geneAtp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204B11.bB6Ng01-204B11.g
ACCGA024132GA024133
length1,048991
definitionB6Ng01-204B11.b B6Ng01-204B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,248,470 - 109,249,497)(109,081,606 - 109,082,591)
sequence
gaattcagctagtaaacttaagtaagagccttcatttttaaccagaattc
caagaaacagggaaagggtgatatcaaactgcactctaaacttctgtttt
tgagacagggtctcagtacatagccctggctggcctggaatttactttgt
agacaagattggcctctcactcacagagatttgcctacttctgcccccaa
gtactaggattaaaggtatgcaccgccatgcccagttaaggaacattaaa
aaaaaaaattgtaaaggaactaaaataccagcaggctggatccaggtgcg
acagccactcacctgagtgacgtgtgtgaatatctgctcagacatcttct
cacacagaacggccagcagctgcagaacctgcagcttccgctcctggtct
tctatgagcagagtctggtggtgctctaactcaaggaggctcgcatagca
ggagggcttgggagtgaactctgcttctctgtcctccagcaggtgagaca
actcctaaagcaggaagagagaggcagaggccctaaggacacgaaaaaca
taggaagtttatgcataagaaagactcctgaagtctcagctcctcaggag
cctgggggaagaggactgcaggtcccaggcccactgaggctacagagtgt
gcccaggaccacccaaggggacctagtgagacctgccttaaaaaaaaata
aaaaacaaaccctaggggtatagaaagctgaaaagaaaaggaaagaaaaa
acacgctgtacagaaaatattatgcatagtgataccaagtacatgaactt
acacacacacacacacacacacacacatacacacaggagacagagagaga
gagcacaaaccatggttttgagggacaaaaccaactcattggagatcagc
ctctgacctccacacatgcacagtgggcaacaagaagctcccctcaccca
acacgtacacaatacacacacaccaaataataagttatttttttttttaa
gaaaaaaaataaaaaataaaaaaaaaagggacttggcctagggcagtt
gaattctttctatggtttatttttatgcataagaatgtcttgcttagccg
ggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggcagg
cggatttctgagttcgaggccagcctggtctacagagtgagttccaggac
agccaggactatacagagaaaccctgtctcgaaaaaacaaaaaacaaaaa
aaaaacaacaacaacaaaaaaagaatgtcttgcttgcatgtatgtatgta
cactgtgtacataccagaggggccacagaaggctatcagctcctctggaa
ctggagttaaagaacagactgtggtgagctgccatgttgagtgctggtat
tatggggagcccaccaaagaagaccacgcagacacagtctgtaaacaact
gaaattctttttttccagctgaccaggattacacttgggtccagggacac
cagtgtagccctgaggtcttagaacaaggggctttgaagcaaaaaacata
tctggtctcttgcttggttgctgcagaggacacttttgagcaaacaagga
ggggaagggttgcttttgagcaagcaggtagttgtaacagaagctaagat
aagcagttagccgaaacaggaggttttgcacaagcaagtagtttaacaga
aaccaatataaattagctggggtatcttgacccttgggttctttgagtag
agttggttgatttttcatgggagtctccaacaaggagctcaagttctagt
caaacctaagatagcttccacgtggagaacctctctgtattgtcctatca
ctggggactaaaccccaaggtcttctgtaggaatatcaactgctcttaaa
ctgctgggctctctttccagatccagagtggtttaaatctcaaagcagct
gtacttctaattccatccctgaacctagtagcccagcttgtcaccttgat
gagtagaatgcttgggtgctggagcctgcagttgagtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109248470_109249497
seq2: B6Ng01-204B11.b_46_1093 (reverse)

seq1  AACTGCC---TGGCAAGT-CCTTTTTTTTTTTTTTTTTTTTTTTTTTCTT  46
      |||||||    | ||||| |||||||||||| |||||| |||||||||||
seq2  AACTGCCCTAGGCCAAGTCCCTTTTTTTTTTATTTTTTATTTTTTTTCTT  50

seq1  AAAAAAAAA---TACTTATTATTT-GTGTGTGTGT-TTGTGTACGTGTT-  90
      |||||||||    ||||||||||| |||||||||| ||||||||||||| 
seq2  AAAAAAAAAAATAACTTATTATTTGGTGTGTGTGTATTGTGTACGTGTTG  100

seq1  GGTGAGGGGAGCTTCCTGT--GCCACTGTGCATGTGTGGAGTTCAGAGGC  138
      ||||||||||||||| |||   ||||||||||||||||||| ||||||||
seq2  GGTGAGGGGAGCTTCTTGTTGCCCACTGTGCATGTGTGGAGGTCAGAGGC  150

seq1  TGATCTCC-ATGAGTTGGTTTTGTCCCTC-AAACCATGGTTTGTGCTCTC  186
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TGATCTCCAATGAGTTGGTTTTGTCCCTCAAAACCATGGTTTGTGCTCTC  200

seq1  TCTCTCTGTCT-CTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTAA  235
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTCCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTAA  250

seq1  GTTCATGTACTTGGTATCACTATGCAT-ATA-TTTCTGTACAGCGTG-TT  282
      ||||||||||||||||||||||||||| ||| ||||||||||||||| ||
seq2  GTTCATGTACTTGGTATCACTATGCATAATATTTTCTGTACAGCGTGTTT  300

seq1  TTTCTTTCCTTTTC-TTTCAGC-TTCTATACCCCTAGGGTTTGTTTTTTA  330
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TTTCTTTCCTTTTCTTTTCAGCTTTCTATACCCCTAGGGTTTGTTTTTTA  350

seq1  TTTTTTTTTAAGGCAGGTCTCACTAGGTCCCCTTGGGTGGTCCTGGGCAC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAGGCAGGTCTCACTAGGTCCCCTTGGGTGGTCCTGGGCAC  400

seq1  ACTCTGTAGCCTCAGTGGGCCTGGGACCTGCAGTCCTCTTCCCCCAGGCT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGCCTCAGTGGGCCTGGGACCTGCAGTCCTCTTCCCCCAGGCT  450

seq1  CCTGAGGAGCTGAGACTTCAGGAGTCTTTCTTATGCATAAACTTCCTATG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAGCTGAGACTTCAGGAGTCTTTCTTATGCATAAACTTCCTATG  500

seq1  TTTTTCGTGTCCTTAGGGCCTCTGCCTCTCTCTTCCTGCTTTAGGAGTTG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGTGTCCTTAGGGCCTCTGCCTCTCTCTTCCTGCTTTAGGAGTTG  550

seq1  TCTCACCTGCTGGAGGACAGAGAAGCAGAGTTCACTCCCAAGCCCTCCTG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGCTGGAGGACAGAGAAGCAGAGTTCACTCCCAAGCCCTCCTG  600

seq1  CTATGCGAGCCTCCTTGAGTTAGAGCACCACCAGACTCTGCTCATAGAAG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCGAGCCTCCTTGAGTTAGAGCACCACCAGACTCTGCTCATAGAAG  650

seq1  ACCAGGAGCGGAAGCTGCAGGTTCTGCAGCTGCTGGCCGTTCTGTGTGAG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGCGGAAGCTGCAGGTTCTGCAGCTGCTGGCCGTTCTGTGTGAG  700

seq1  AAGATGTCTGAGCAGATATTCACACACGTCACTCAGGTGAGTGGCTGTCG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCTGAGCAGATATTCACACACGTCACTCAGGTGAGTGGCTGTCG  750

seq1  CACCTGGATCCAGCCTGCTGGTATTTTAGTTCCTTTACAATTTTTTTTTT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGATCCAGCCTGCTGGTATTTTAGTTCCTTTACAATTTTTTTTTT  800

seq1  TAATGTTCCTTAACTGGGCATGGCGGTGCATACCTTTAATCCTAGTACTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCCTTAACTGGGCATGGCGGTGCATACCTTTAATCCTAGTACTT  850

seq1  GGGGGCAGAAGTAGGCAAATCTCTGTGAGTGAGAGGCCAATCTTGTCTAC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAGAAGTAGGCAAATCTCTGTGAGTGAGAGGCCAATCTTGTCTAC  900

seq1  AAAGTAAATTCCAGGCCAGCCAGGGCTATGTACTGAGACCCTGTCTCAAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATTCCAGGCCAGCCAGGGCTATGTACTGAGACCCTGTCTCAAA  950

seq1  AACAGAAGTTTAGAGTGCAGTTTGATATCACCCTTTCCCTGTTTCTTGGA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGTTTAGAGTGCAGTTTGATATCACCCTTTCCCTGTTTCTTGGA  1000

seq1  ATTCTGGTTAAAAATGAAGGCTCTTACTTAAGTTTACTAGCTGAATTC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTTAAAAATGAAGGCTCTTACTTAAGTTTACTAGCTGAATTC  1048

seq1: chr8_109081606_109082591
seq2: B6Ng01-204B11.g_70_1060

seq1  GAATTCTTTCTATGGTTTATTTTTATGCATAAGAATGTCTTGCTTAGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTATGGTTTATTTTTATGCATAAGAATGTCTTGCTTAGCCG  50

seq1  GGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  100

seq1  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  150

seq1  AGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAA  200

seq1  AAAAACAACAACAACAAAAAAAGAATGTCTTGCTTGCATGTATGTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACAACAACAAAAAAAGAATGTCTTGCTTGCATGTATGTATGTA  250

seq1  CACTGTGTACATACCAGAGGGGCCACAGAAGGCTATCAGCTCCTCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTACATACCAGAGGGGCCACAGAAGGCTATCAGCTCCTCTGGAA  300

seq1  CTGGAGTTAAAGAACAGACTGTGGTGAGCTGCCATGTTGAGTGCTGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTAAAGAACAGACTGTGGTGAGCTGCCATGTTGAGTGCTGGTAT  350

seq1  TATGGGGAGCCCACCAAAGAAGACCACGCAGACACAGTCTGTAAACAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGAGCCCACCAAAGAAGACCACGCAGACACAGTCTGTAAACAACT  400

seq1  GAAATTCTTTTTTTCCAGCTGACCAGGATTACACTTGGGTCCAGGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTTTTTTCCAGCTGACCAGGATTACACTTGGGTCCAGGGACAC  450

seq1  CAGTGTAGCCCTGAGGTCTTAGAACAAGGGGCTTTGAAGCAAAAAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGCCCTGAGGTCTTAGAACAAGGGGCTTTGAAGCAAAAAACATA  500

seq1  TCTGGTCTCTTGCTTGGTTGCTGCAGAGGACACTTTTGAGCAAACAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTCTTGCTTGGTTGCTGCAGAGGACACTTTTGAGCAAACAAGGA  550

seq1  GGGGAAGGGTTGCTTTTGAGCAAGCAGGTAGTTGTAACAGAAGCTAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGTTGCTTTTGAGCAAGCAGGTAGTTGTAACAGAAGCTAAGAT  600

seq1  AAGCAGTTAGCCGAAACAGGAGGTTTTGCACAAGCAAGTAGTTTAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTAGCCGAAACAGGAGGTTTTGCACAAGCAAGTAGTTTAACAGA  650

seq1  AACCAATATAAATTAGCTGGGGTATCTTGACCCTTGGGTTCTTTGAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATATAAATTAGCTGGGGTATCTTGACCCTTGGGTTCTTTGAGTAG  700

seq1  AGTTGGTTGATTTTTCATGGGAGTCTCCAACAAGGAGCTCAAGTTCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTGATTTTTCATGGGAGTCTCCAACAAGGAGCTCAAGTTCTAGT  750

seq1  CAAACCTAAGATAGCTTCCACGTGGAGAACCTCTCTGTATTGTCCTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAAGATAGCTTCCACGTGGAGAACCTCTCTGTATTGTCCTATCA  800

seq1  CTGGGGACTAAACCCC-AGGTCTTCTGTAGGAATATCAACTGCTCTTAAA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGGGACTAAACCCCAAGGTCTTCTGTAGGAATATCAACTGCTCTTAAA  850

seq1  CTGCTGGGCTCTCTTTCCAGATCCAGGAGTGG-TTAAATCTTCAAAGCAG  898
      ||||||||||||||||||||||||| |||||| ||||||| |||||||||
seq2  CTGCTGGGCTCTCTTTCCAGATCCA-GAGTGGTTTAAATC-TCAAAGCAG  898

seq1  CTGTACTTCTAA-TCCAT-CCTGAACCTAGAAGCCCCAGC-TGTCACC-T  944
      |||||||||||| ||||| ||||||||||| || |||||| ||||||| |
seq2  CTGTACTTCTAATTCCATCCCTGAACCTAGTAG-CCCAGCTTGTCACCTT  947

seq1  GATGAGTAGAATGCT--GGGGGTGGAGCCTGCAGTTGAGTTATA  986
      |||||||||||||||  || | |||||||||||||||||| |||
seq2  GATGAGTAGAATGCTTGGGTGCTGGAGCCTGCAGTTGAGTCATA  991