BAC Information

Click to search

BAC

Clone NameB6Ng01-204F04
Chromosome8 (Build37)
Map Location 51,680,918 - 51,848,710
singlet/doubletdoublet
Overlap geneLOC100039966
Upstream geneLOC100039919, EG667495, LOC100039954
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204F04.bB6Ng01-204F04.g
ACCGA024298GA024299
length5451,149
definitionB6Ng01-204F04.b B6Ng01-204F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,680,918 - 51,681,468)(51,847,554 - 51,848,710)
sequence
cttataatatcatagattggagaatcagtacattactgatgtttaccaca
aactgaataaatgtttactgaaattatacaaaacagctatttttgaataa
tttttgcacttataatatatgcatttgtaagcataaatacacacaaaaat
tcctaagagaattccagatcacctggagctgggatacagatagttctgag
tagccatacttgggtcctggtaaccaaacttgggtttttgaaaaagcttt
atgtggtctcaacagctgggccatttctctagtcttagctattcttttaa
aatcgttctaatatgtgtttattaatgttatagtttttaagacattgtaa
ttgtttttaagagaggaaactatcttgtttgatatgctattaatgtcagg
aaaatcaattcattgataattttattttgaaatataaacatgttatttat
aacaggatacagttgtgaagaataaaagaagcacagttaaggaagggaga
aaagaggaaggaaggaggaaggggaaggagagagggaggaagagg

gaattcactttaaaacgtattaatatagtcaaaggtaactttccttagta
aatcaataaaatattaatcacttaccttattaagattgttgtgtattaat
gataaagtataattaatattattttgtttgatatatttttaactatcagt
atgtagaaaatctatccacaaaatatgaagcttagaaatgaaaacagagt
ttatatactttgaattgcctagatcaccatagacatactctcttggtgaa
tcttcaataggtcatgagtaggtaggtcatggttagtcactaagcttaac
ttcttacttgtgccctggatatgaagttttcaacatgatttcttgcatgg
ctcatgacgttatttcaatgagacaattatgtattttctacatccattcg
aattttatatgaagtggaaatatagcaccatggaacatttatcttactaa
gtaaataacatgaatattgttacccctgtatgttcagtgtcttcttcatc
ttttaatttctattatttttatatattttctgttatcccatactttctga
agcttttgttaatgttaactttgtggaaagtcttctttcagtgaattttc
cacatttggagtaaattcatcatatttatgaattgggatcatatgtgtgt
gaggttaaagatgtctttatctaaaaccaatgttacagatgtgttttaag
attgctcaaattttaccatttatatgtattttaactgaagttttctattg
tgttcaaaataataatataagcaaaaatttactcgtctttcttattatac
tattaacttcctctgacatttctatggtgactataacattgttctttcta
gaaagtccctacttttcactgattttaacttagtttcctggaaaaatttt
tattcatactgaacaacataaaatggctgtcattcgataaattgtcaata
gcaaaagtgtttttaaaatagtctgcattataagcaagtagatcactagt
taacagtttttcttttcttggtataatgtttttgttatgcaaacattcta
catctgtaatgctgagaaaagggaattcaattccttgccaagatttctca
tcctgtcatctagcttacttcacgtcctattccatctctttcaaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51680918_51681468
seq2: B6Ng01-204F04.b_48_598

seq1  GAATTCCTTATAATATCATAGATTGGAGAATCAGTACATTACTGATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATAATATCATAGATTGGAGAATCAGTACATTACTGATGTTT  50

seq1  ACCACAAACTGAATAAATGTTTACTGAAATTATACAAAACAGCTATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACTGAATAAATGTTTACTGAAATTATACAAAACAGCTATTTTT  100

seq1  GAATAATTTTTGCACTTATAATATATGCATTTGTAAGCATAAATACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTTTGCACTTATAATATATGCATTTGTAAGCATAAATACACAC  150

seq1  AAAAATTCCTAAGAGAATTCCAGATCACCTGGAGCTGGGATACAGATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCCTAAGAGAATTCCAGATCACCTGGAGCTGGGATACAGATAGT  200

seq1  TCTGAGTAGCCATACTTGGGTCCTGGTAACCAAACTTGGGTTTTTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTAGCCATACTTGGGTCCTGGTAACCAAACTTGGGTTTTTGAAAA  250

seq1  AGCTTTATGTGGTCTCAACAGCTGGGCCATTTCTCTAGTCTTAGCTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATGTGGTCTCAACAGCTGGGCCATTTCTCTAGTCTTAGCTATTC  300

seq1  TTTTAAAATCGTTCTAATATGTGTTTATTAATGTTATAGTTTTTAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATCGTTCTAATATGTGTTTATTAATGTTATAGTTTTTAAGACA  350

seq1  TTGTAATTGTTTTTAAGAGAGGAAACTATCTTGTTTGATATGCTATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTGTTTTTAAGAGAGGAAACTATCTTGTTTGATATGCTATTAAT  400

seq1  GTCAGGAAAATCAATTCATTGATAATTTTATTTTGAAATATAAACATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAAATCAATTCATTGATAATTTTATTTTGAAATATAAACATGTT  450

seq1  ATTTATAACAGGATACAGTTGTGAAGAATAAAAGAAGCACAGTTAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACAGGATACAGTTGTGAAGAATAAAAGAAGCACAGTTAAGGAA  500

seq1  GGGAGAAAAGAGGAAGGAAGGAGGAAGGGGAAGGAGAGAGGGAGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAAGAGGAAGGAAGGAGGAAGGGGAAGGAGAGAGGGAGGAAGAG  550

seq1  G  551
      |
seq2  G  551


seq1: chr8_51847554_51848710
seq2: B6Ng01-204F04.g_66_1214 (reverse)

seq1  ACAATTTGAA--AGATAGAATTAGAAGTGAAAGTTTAGCTAGAATGACAA  48
      ||||||||||  |||| ||||  || |||||   | |||||| |||||  
seq2  ACAATTTGAAAGAGATGGAATAGGACGTGAA--GTAAGCTAG-ATGAC--  45

seq1  AGTATGAGAAAATCTTTGCAAGGGATTGAATTTCCTTTTTCCTTCAGCAT  98
      || ||||| ||||||| |||||| |||||||| ||||||    |||||| 
seq2  AGGATGAG-AAATCTTGGCAAGGAATTGAATTCCCTTTT---CTCAGCA-  90

seq1  TTACAGATTGTAGGAATGTTTGCATAAC-AAAACATTATACCAAGAAA--  145
      ||||||| |||| ||||||||||||||| |||||||||||||||||||  
seq2  TTACAGA-TGTA-GAATGTTTGCATAACAAAAACATTATACCAAGAAAAG  138

seq1  GAAAACTGTTAACTAGTGGATCTACTTGCTTATAATGCAGACTATTTTAA  195
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAACTGTTAACTAGT-GATCTACTTGCTTATAATGCAGACTATTTTAA  187

seq1  AAACACTTTTGCTATTGACAATTTATCGAATGACAGCCATTTTATGTTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTTTGCTATTGACAATTTATCGAATGACAGCCATTTTATGTTGT  237

seq1  TCAGTATGAATAAAAATTTTTCCAGGAAACTAAGTTAAAATCAGTGAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGAATAAAAATTTTTCCAGGAAACTAAGTTAAAATCAGTGAAAA  287

seq1  GTAGGGACTTTCTAGAAAGAACAATGTTATAGTCACCATAGAAATGTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGACTTTCTAGAAAGAACAATGTTATAGTCACCATAGAAATGTCAG  337

seq1  AGGAAGTTAATAGTATAATAAGAAAGACGAGTAAATTTTTGCTTATATTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTAATAGTATAATAAGAAAGACGAGTAAATTTTTGCTTATATTA  387

seq1  TTATTTTGAACACAATAGAAAACTTCAGTTAAAATACATATAAATGGTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAACACAATAGAAAACTTCAGTTAAAATACATATAAATGGTAA  437

seq1  AATTTGAGCAATCTTAAAACACATCTGTAACATTGGTTTTAGATAAAGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGCAATCTTAAAACACATCTGTAACATTGGTTTTAGATAAAGAC  487

seq1  ATCTTTAACCTCACACACATATGATCCCAATTCATAAATATGATGAATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAACCTCACACACATATGATCCCAATTCATAAATATGATGAATTT  537

seq1  ACTCCAAATGTGGAAAATTCACTGAAAGAAGACTTTCCACAAAGTTAACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAATGTGGAAAATTCACTGAAAGAAGACTTTCCACAAAGTTAACA  587

seq1  TTAACAAAAGCTTCAGAAAGTATGGGATAACAGAAAATATATAAAAATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAGCTTCAGAAAGTATGGGATAACAGAAAATATATAAAAATAA  637

seq1  TAGAAATTAAAAGATGAAGAAGACACTGAACATACAGGGGTAACAATATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAAAAGATGAAGAAGACACTGAACATACAGGGGTAACAATATT  687

seq1  CATGTTATTTACTTAGTAAGATAAATGTTCCATGGTGCTATATTTCCACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTACTTAGTAAGATAAATGTTCCATGGTGCTATATTTCCACT  737

seq1  TCATATAAAATTCGAATGGATGTAGAAAATACATAATTGTCTCATTGAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAAATTCGAATGGATGTAGAAAATACATAATTGTCTCATTGAAA  787

seq1  TAACGTCATGAGCCATGCAAGAAATCATGTTGAAAACTTCATATCCAGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCATGAGCCATGCAAGAAATCATGTTGAAAACTTCATATCCAGGG  837

seq1  CACAAGTAAGAAGTTAAGCTTAGTGACTAACCATGACCTACCTACTCATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTAAGAAGTTAAGCTTAGTGACTAACCATGACCTACCTACTCATG  887

seq1  ACCTATTGAAGATTCACCAAGAGAGTATGTCTATGGTGATCTAGGCAATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGAAGATTCACCAAGAGAGTATGTCTATGGTGATCTAGGCAATT  937

seq1  CAAAGTATATAAACTCTGTTTTCATTTCTAAGCTTCATATTTTGTGGATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATATAAACTCTGTTTTCATTTCTAAGCTTCATATTTTGTGGATA  987

seq1  GATTTTCTACATACTGATAGTTAAAAATATATCAAACAAAATAATATTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTACATACTGATAGTTAAAAATATATCAAACAAAATAATATTAA  1037

seq1  TTATACTTTATCATTAATACACAACAATCTTAATAAGGTAAGTGATTAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTTATCATTAATACACAACAATCTTAATAAGGTAAGTGATTAAT  1087

seq1  ATTTTATTGATTTACTAAGGAAAGTTACCTTTGACTATATTAATACGTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGATTTACTAAGGAAAGTTACCTTTGACTATATTAATACGTTT  1137

seq1  TAAAGTGAATTC  1157
      ||||||||||||
seq2  TAAAGTGAATTC  1149


| Home | SequenceCutter | Blast | Download |