BAC Information

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BAC

Clone NameB6Ng01-205B11
Chromosome8 (Build37)
Map Location 102,823,216 - 102,980,256
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205B11.bB6Ng01-205B11.g
ACCGA024864GA024865
length1,1451,108
definitionB6Ng01-205B11.b B6Ng01-205B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,823,216 - 102,824,345)(102,979,152 - 102,980,256)
sequence
gaattcaccctctattctaatctaatcaaaattaagatccatctccccat
ttgtatttcttgatatttcctttccacatgggctggagggagctgaccct
gcttgaacaggtgattgaccctggcctccagagaaacaggaacttagatc
ttgacactgcagcagcctctctctgactgtcaagattgtgctggaagcct
ccagagagattgtcgggactagagaggatgaggagggactttgcacaggg
gcagaagtatttattagttcagaaactgagtagatagaagacactgaaac
aacaattaggttgaagcaaactagtaatggctcacataggaagaacttta
atatagcagctatactccatagctcataaagacattgtttcattctagta
gtctgtgaaatgatatattactctttccctagcaataaacatttaaggta
ctcgaacaagagcaattcaaggtcagatcaattaaggcaattacattcgt
gaggtttttgagaaacaatatatgtagttcaagatatttatataatggga
ggtaagtagaggaatgcagatgcctgaaataagcttagaagaaagtgagt
agaattacctatattgtatatagtatataacttaatttactatattgtat
atagtatataacttttcttataatacagtttatatgtatatgatggtata
ttatttattaagtataaataaaatttatgatatctatgatatagtttact
acagtacagaatgagaagtattatagaatcacttaagtgtggtgagattc
aaatctgtaatcgagatttcattatattacatatcttgtatatatacata
cgtatgtatatatatgagagtgtgagacagacaaaatgagacatagatag
acagaatcttgacagacagaaaaacagagagattgattcaatacattggt
tccaaataaaggacaggcactggaaaacctggaattccaggccattaggg
tggaaactaaaacaagaaattaaatgataacatggagtctgaagaactgt
aacagtagaacttttccagcccttcagaactctattttgtggcagtaccg
tcttgaaagcagaagtcctgggttcagaagttctatagtttgctc
gaattctgggccatgttacttcgaaaagagaatcaattttacgagtgatc
atccagaaatgtgtttaccaaacagttgctttttctttatttaaacttta
attctgcatataagaacaaaagaagatggtggtagtttagcttgctactg
aaatcagggaagaaaaagcaagaaactagagtccagaggcatttttttaa
catagagaatttgaatttaatattttaaaatctcagaaataaaaataaaa
actagatgaaaacattaagttgtaggcataattttttttttgcaatctac
ttttaaaacatttcaatatctcctctagcccaccactaagcagagtaagg
gaagagaaaagttattaggatgtgggaaaaatggacctgttcattaatac
ttctttgggggtaaagtcgatctgctttggctgcagatccaccttctaac
caactccaattaaaagttttcttttataagagttgctatggtcatggtat
ctcttcacagctatggaaattctaacatatagtgcttgggaatttttcct
taatctgttgttgttgttgttgttgttgttgttaagtattcagtcattca
ccagttctccatcaacctggtcccattttcctcttcattctttcaacatt
tcctatgtttctcttctctttactatactccaaggatattagctatacct
aatcagtgatgagcagctttaattaaagtattaatgtactagaatgtaca
aatgttaacactcacctctctgatacataggagtacaagcattgcagagt
atttcactatttgattatttttgccttaagtaaaagacattgtaaagtcc
tttatacaaatcaaccgagctttgccccaattttttatttactaatgata
gtgaaaaacgtttactaaatttctactaacttggaccaagagccctttta
aactatcattgcaaacattttgcttcatgcttatgtacacttcaagtgat
tctctggacacccatttggatgaagttgtcgaaatcattaaaccttcata
catgaccagaatgtgaagtattgaaatttataggtctaagttctctagtt
ggcttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102823216_102824345
seq2: B6Ng01-205B11.b_50_1194

seq1  GAATTCACCCTCTATTCTAATCTAATCAAAATTAAGATCCATCTCCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTCTATTCTAATCTAATCAAAATTAAGATCCATCTCCCCAT  50

seq1  TTGTATTTCTTGATATTTCCTTTCCACATGGGCTGGAGGGAGCTGACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTCTTGATATTTCCTTTCCACATGGGCTGGAGGGAGCTGACCCT  100

seq1  GCTTGAACAGGTGATTGACCCTGGCCTCCAGAGAAACAGGAACTTAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAACAGGTGATTGACCCTGGCCTCCAGAGAAACAGGAACTTAGATC  150

seq1  TTGACACTGCAGCAGCCTCTCTCTGACTGTCAAGATTGTGCTGGAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTGCAGCAGCCTCTCTCTGACTGTCAAGATTGTGCTGGAAGCCT  200

seq1  CCAGAGAGATTGTCGGGACTAGAGAGGATGAGGAGGGACTTTGCACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGATTGTCGGGACTAGAGAGGATGAGGAGGGACTTTGCACAGGG  250

seq1  GCAGAAGTATTTATTAGTTCAGAAACTGAGTAGATAGAAGACACTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTATTTATTAGTTCAGAAACTGAGTAGATAGAAGACACTGAAAC  300

seq1  AACAATTAGGTTGAAGCAAACTAGTAATGGCTCACATAGGAAGAACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAGGTTGAAGCAAACTAGTAATGGCTCACATAGGAAGAACTTTA  350

seq1  ATATAGCAGCTATACTCCATAGCTCATAAAGACATTGTTTCATTCTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGCTATACTCCATAGCTCATAAAGACATTGTTTCATTCTAGTA  400

seq1  GTCTGTGAAATGATATATTACTCTTTCCCTAGCAATAAACATTTAAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAAATGATATATTACTCTTTCCCTAGCAATAAACATTTAAGGTA  450

seq1  CTCGAACAAGAGCAATTCAAGGTCAGATCAATTAAGGCAATTACATTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACAAGAGCAATTCAAGGTCAGATCAATTAAGGCAATTACATTCGT  500

seq1  GAGGTTTTTGAGAAACAATATATGTAGTTCAAGATATTTATATAATGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTGAGAAACAATATATGTAGTTCAAGATATTTATATAATGGGA  550

seq1  GGTAAGTAGAGGAATGCAGATGCCTGAAATAAGCTTAGAAGAAAGTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTAGAGGAATGCAGATGCCTGAAATAAGCTTAGAAGAAAGTGAGT  600

seq1  AGAATTACCTATATTGTATATAGTATATAACTTAATTTACTATATTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACCTATATTGTATATAGTATATAACTTAATTTACTATATTGTAT  650

seq1  ATAGTATATAACTTTTCTTATAATACAGTTTATATGTATATGATGGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATATAACTTTTCTTATAATACAGTTTATATGTATATGATGGTATA  700

seq1  TTATTTATTAAGTATAAATAAAATTTATGATATCTATGATATAGTTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTAAGTATAAATAAAATTTATGATATCTATGATATAGTTTACT  750

seq1  ACAGTACAGAATGAGAAGTATTATAGAATCACTTAAGTGTGGTGAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAGAATGAGAAGTATTATAGAATCACTTAAGTGTGGTGAGATTC  800

seq1  AAATCTGTAATCGAGATTTCATTATATTACATATCTTGTATATATACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTAATCGAGATTTCATTATATTACATATCTTGTATATATACATA  850

seq1  CGTATGTATATATATGAGAGTGTGAGACAGACAAAATGAGACATAGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGTATATATATGAGAGTGTGAGACAGACAAAATGAGACATAGATAG  900

seq1  ACAGAATC-TGACAGACAGAAAAACAGAGAGATTGATTCAATACATTGG-  948
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  ACAGAATCTTGACAGACAGAAAAACAGAGAGATTGATTCAATACATTGGT  950

seq1  TCCAAAT-AAGGACAGGCACTGGAAAACCTGGAATTCCAGGCCATTAGGG  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAAAGGACAGGCACTGGAAAACCTGGAATTCCAGGCCATTAGGG  1000

seq1  TGGAAACTAAAACAAGAA--TAAATGAT-ACATGGAGTCTGAAG-ACTGT  1043
      ||||||||||||||||||  |||||||| ||||||||||||||| |||||
seq2  TGGAAACTAAAACAAGAAATTAAATGATAACATGGAGTCTGAAGAACTGT  1050

seq1  -ACAGTAG-ACTTTTCCAGCCC-TCAG-ACTCTA-TTTGT-GCAGTACCG  1087
       ||||||| ||||||||||||| |||| |||||| ||||| |||||||||
seq2  AACAGTAGAACTTTTCCAGCCCTTCAGAACTCTATTTTGTGGCAGTACCG  1100

seq1  TCTTG-AAGCAGAGTTCCTGGTTCAAGAAGTTCTA-AGTTTGCTC  1130
      ||||| |||||||  |||||| |  |||||||||| |||||||||
seq2  TCTTGAAAGCAGAAGTCCTGGGTTCAGAAGTTCTATAGTTTGCTC  1145

seq1: chr8_102979152_102980256
seq2: B6Ng01-205B11.g_69_1176 (reverse)

seq1  CAGAAGCCAAACT--AGAACTTAGACTTATTTAATTTTCATACCTTCCCA  48
      |||||||| ||||  ||||||||||| ||  ||| |||||   |||| ||
seq2  CAGAAGCC-AACTAGAGAACTTAGACCTA--TAAATTTCAATACTTCACA  47

seq1  TCTTGTTCATGTATGAATGTTTAATGGATTCTACAACTTCATTCAAAT-G  97
      |  || ||||||||||| ||||||||  ||| |||||||||| ||||| |
seq2  TTCTGGTCATGTATGAAGGTTTAATGATTTCGACAACTTCATCCAAATGG  97

seq1  GTGTCCAGAGAATCACTTG-AGTGTAACATAAGCATG-AGCAAAATGTTT  145
      ||||||||||||||||||| ||||| ||||||||||| ||||||||||||
seq2  GTGTCCAGAGAATCACTTGAAGTGT-ACATAAGCATGAAGCAAAATGTTT  146

seq1  GCAATGAATAGTTTTAAAGGGCTCTTTGGTCAAGGTAGTAGAAAATTAGT  195
      |||||| ||||||| ||||||||||| |  |||| ||||||||| |||||
seq2  GCAATG-ATAGTTTAAAAGGGCTCTTGGTCCAAGTTAGTAGAAATTTAGT  195

seq1  -AACGTTTTTCACTATCA-TAGTAAATAAAAAA-TGGGGCAAAGCTCGGT  242
       ||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AAACGTTTTTCACTATCATTAGTAAATAAAAAATTGGGGCAAAGCTCGGT  245

seq1  TGATTTGTATAAAGGAACTTTACAATGTTCTTTTACTTAAGGCAAAAATA  292
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TGATTTGTATAAAGG-ACTTTACAATG-TCTTTTACTTAAGGCAAAAATA  293

seq1  ATCAAATAGTG-AATACTCTGCAATGCTTGTACTCCTATGTATCAGAGAG  341
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAGTGAAATACTCTGCAATGCTTGTACTCCTATGTATCAGAGAG  343

seq1  GTGAGTGTTAACATTTGTACATTCTAGTACATTAATACTTTAATT-AAGC  390
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGAGTGTTAACATTTGTACATTCTAGTACATTAATACTTTAATTAAAGC  393

seq1  TGCTCATCACTGATTAGGTATAGCTAATATCCTTGGAGTATAGTAAAGAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCACTGATTAGGTATAGCTAATATCCTTGGAGTATAGTAAAGAG  443

seq1  AAGAGAAACATAGGAAATGTTGAAAGAATGAAGAGGAAAATGGGACCAGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACATAGGAAATGTTGAAAGAATGAAGAGGAAAATGGGACCAGG  493

seq1  TTGATGGAGAACTGGTGAATGACTGAATACTTAACAACAACAACAACAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAGAACTGGTGAATGACTGAATACTTAACAACAACAACAACAAC  543

seq1  AACAACAACAGATTAAGGAAAAATTCCCAAGCACTATATGTTAGAATTTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAGATTAAGGAAAAATTCCCAAGCACTATATGTTAGAATTTC  593

seq1  CATAGCTGTGAAGAGATACCATGACCATAGCAACTCTTATAAAAGAAAAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGTGAAGAGATACCATGACCATAGCAACTCTTATAAAAGAAAAC  643

seq1  TTTTAATTGGAGTTGGTTAGAAGGTGGATCTGCAGCCAAAGCAGATCGAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGGAGTTGGTTAGAAGGTGGATCTGCAGCCAAAGCAGATCGAC  693

seq1  TTTACCCCCAAAGAAGTATTAATGAACAGGTCCATTTTTCCCACATCCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCCAAAGAAGTATTAATGAACAGGTCCATTTTTCCCACATCCTA  743

seq1  ATAACTTTTCTCTTCCCTTACTCTGCTTAGTGGTGGGCTAGAGGAGATAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTCTCTTCCCTTACTCTGCTTAGTGGTGGGCTAGAGGAGATAT  793

seq1  TGAAATGTTTTAAAAGTAGATTGCAAAAAAAAAATTATGCCTACAACTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTTTAAAAGTAGATTGCAAAAAAAAAATTATGCCTACAACTTA  843

seq1  ATGTTTTCATCTAGTTTTTATTTTTATTTCTGAGATTTTAAAATATTAAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCATCTAGTTTTTATTTTTATTTCTGAGATTTTAAAATATTAAA  893

seq1  TTCAAATTCTCTATGTTAAAAAAATGCCTCTGGACTCTAGTTTCTTGCTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCTCTATGTTAAAAAAATGCCTCTGGACTCTAGTTTCTTGCTT  943

seq1  TTTCTTCCCTGATTTCAGTAGCAAGCTAAACTACCACCATCTTCTTTTGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCTGATTTCAGTAGCAAGCTAAACTACCACCATCTTCTTTTGT  993

seq1  TCTTATATGCAGAATTAAAGTTTAAATAAAGAAAAAGCAACTGTTTGGTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATGCAGAATTAAAGTTTAAATAAAGAAAAAGCAACTGTTTGGTA  1043

seq1  AACACATTTCTGGATGATCACTCGTAAAATTGATTCTCTTTTCGAAGTAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTCTGGATGATCACTCGTAAAATTGATTCTCTTTTCGAAGTAA  1093

seq1  CATGGCCCAGAATTC  1105
      |||||||||||||||
seq2  CATGGCCCAGAATTC  1108