BAC Information

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BAC

Clone NameB6Ng01-205G02
Chromosome8 (Build37)
Map Location 69,370,305 - 69,390,749
singlet/doubletdoublet
Overlap geneBC053440
Upstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2, Npy5r, Npy1r
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205G02.bB6Ng01-205G02.g
ACCGA025076GA025077
length1,2151,088
definitionB6Ng01-205G02.b B6Ng01-205G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,389,554 - 69,390,749)(69,370,305 - 69,371,394)
sequence
gaattctacatcttgatccaaaggcagacaggaggagcctgttttctgca
ttgggtgctgtttgagcttatataggagacctcaaagacaccctccaaag
tgacacacttcctccaacaagtccatacacctaatagtgcactccctatg
ggccaagtattcaaacgcatgactctatggggccattcctaatcaaacca
ccacagtgcctcttacatctttttcaaaaaaaatctcttagaaatgtcac
aaaaaggaacacactggtcactgttctaagttttaaaggacagcaatgta
ctcataagggaaaaaaattcacagaactcctagcaattaaatttgtcttt
gctctatttagtatctttccattagataaaaagtagggactcgttggttt
tgtttcaatcaagaacctggcaaatgttacaggtatgttacaatttctta
aaagaaccaataaagaaaaggcacctattcacattcatcctgtaatcatt
actaccattgccggtgaacctaccattagggtcatcagggtcaactactt
catggtaccagggagatgcaaaaatcagttataaactcagtcctcaaata
acaaagcctgtgtggccaaagacctggtctcatttctcatcaatgtctac
agtattctatttagaaacctccaccacacacacacagagtaagactttgt
gttaaattcaaaggactcccccaatgttaaaaattcactcaataaggcaa
atcaaaccatatgataaatctccctacttgccggttttataatctgcgaa
cttctgaaaggtcatcagaatacaggtaaaacaaacaccaggtttccttg
tactttttagaaaatactttgattctgagccttttgtttgccagaaccca
tcatgaactaataacaaattaaaccatggcacactaatccaaaagcctac
aatgtttgagcctacataaaacaaaatactttactatgaacaattaagtt
aatatttgttagaattccagcccaagaaatacacagcctttaggtttcat
ctttaaactagttcaccaatttagtcttttttacaccttcattacaggta
atgaattactaaacttttaagaagtattgataatactcatgtacgaacta
agaccaatcagcatttagcctggaactctaatacctggagactatccttc
tggaaactctacaga
gaattctcacccctacctagcagatagacactatagccgtgagcagcgct
actctgaccatgggtctgattatcattacagaggaggccgggaggatttc
tactatgacgacaggaatcatgatggctggagccatgactacgataacag
aagggacagtagtagaggtgggaagtggccctcatcaagcattccaagga
cactgttctcagggccattttaggtccttttaattaagttgttgcagaaa
tatttctaaatctgtacagagtaatcccacaattttccacttgtctttga
aaaaaattaaacctagtaacaatttgacagagaactgagaactgtggctc
tttgtgtgctactgtaattagctaacctcaggggttctgatagaggaagg
ttcatacaaaagaatatgtcaacattctggtcatttcagacagaaagatg
aactgtatagattggttgtattttaaagcaaatattttaattatctcata
attggtgtagcaagaaatttcttggtaataaatcaatttggtgtatataa
aaggaaacatctaagttggtagtctgaaatgtctgtctgcattttgttaa
taaatgagaaagacagaacttctctgtttattaatagtttatttaaaaca
gtgtattggctttatttggagataaatcatattttctaactcagaattta
agaataaattctgtggtatgctcttgaattttatcacaattgaacataca
tttataaatctttactagttcgttctaagcactttaaaatttcttttcat
tatatttgatgtatgagtagtcattcaggaagttaaatatctacaatgta
tatttttacataaaaatgacagtgttggtgaaaattctttttagaatgat
gttaatacatagagaaaatggcaagtgttcactgcaagaattgtaatttt
gaaattttggttaacaaaacttccatgtttcaagatcctgttggctcttt
cactgcaaaatcgtttccaagaattcattcatggaaaatgtgatcctctt
tatatgcaagcactatactattcttttaaatatattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_69389554_69390749
seq2: B6Ng01-205G02.b_43_1257 (reverse)

seq1  TCTGTAG---TTCCAG-AGGATAGTCT-CAGGTATTAGAGT--CAGGCTA  43
      |||||||   |||||| |||||||||| |||||||||||||  |||||||
seq2  TCTGTAGAGTTTCCAGAAGGATAGTCTCCAGGTATTAGAGTTCCAGGCTA  50

seq1  AATTGCTTGGATTTGGTC-TAGTCTGTACATGAGTTATTATCAATACTTC  92
      || ||||  || |||||| ||||  ||||||||| |||||||||||||||
seq2  AA-TGCT--GA-TTGGTCTTAGTTCGTACATGAG-TATTATCAATACTTC  95

seq1  TTAAAAGTTTGGTAA-TCATTACCTGTAATGA--GTGT--AAAAGACTAA  137
      |||||||||| |||| ||||||||||||||||  ||||  ||||||||||
seq2  TTAAAAGTTTAGTAATTCATTACCTGTAATGAAGGTGTAAAAAAGACTAA  145

seq1  ATTGGTG-ACTAGTTT-AAGATGAAACCTTAAGGCTGTGTATTTCTT-GG  184
      ||||||| |||||||| |||||||||||| ||||||||||||||||| ||
seq2  ATTGGTGAACTAGTTTAAAGATGAAACCTAAAGGCTGTGTATTTCTTGGG  195

seq1  CTGG-ATTCT-ACCAATATT-ACTT-ATTGTTCATAGTAAAGTATTTTGT  230
      |||| ||||| || |||||| |||| ||||||||||||||||||||||||
seq2  CTGGAATTCTAACAAATATTAACTTAATTGTTCATAGTAAAGTATTTTGT  245

seq1  TTTATGTAGGCTC-AACATTGTAGGCTTTTGGATTAGTGTGCCATGGTTT  279
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGGCTCAAACATTGTAGGCTTTTGGATTAGTGTGCCATGGTTT  295

seq1  -ATTTGTTATTAGTTCATGATGGGTTCTGGCAAAC-AAAGGCTCAGAATC  327
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTTGTTATTAGTTCATGATGGGTTCTGGCAAACAAAAGGCTCAGAATC  345

seq1  -AAGTATTTTCTAAAAAGTACAAGGAAACCTGGTGTTTGTTTTACCTGTA  376
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTTCTAAAAAGTACAAGGAAACCTGGTGTTTGTTTTACCTGTA  395

seq1  TTCTGATGACCTTTCAGAAGTTCGCAGATTATAAAACCGGCAAGTAGGGA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGACCTTTCAGAAGTTCGCAGATTATAAAACCGGCAAGTAGGGA  445

seq1  GATTTATCATATGGTTTGATTTGCCTTATTGAGTGAATTTTTAACATTGG  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCATATGGTTTGATTTGCCTTATTGAGTGAATTTTTAACATTGG  495

seq1  GGGAGTCCTTTGAATTTAACACAAAGTCTTACTCTGTGTGTGTGTGGTGG  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCCTTTGAATTTAACACAAAGTCTTACTCTGTGTGTGTGTGGTGG  545

seq1  AGGTTTCTAAATAGAATACTGTAGACATTGATGAGAAATGAGACCAGGTC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTAAATAGAATACTGTAGACATTGATGAGAAATGAGACCAGGTC  595

seq1  TTTGGCCACACAGGCTTTGTTATTTGAGGACTGAGTTTATAACTGATTTT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCACACAGGCTTTGTTATTTGAGGACTGAGTTTATAACTGATTTT  645

seq1  TGCATCTCCCTGGTACCATGAAGTAGTTGACCCTGATGACCCTAATGGTA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCCCTGGTACCATGAAGTAGTTGACCCTGATGACCCTAATGGTA  695

seq1  GGTTCACCGGCAATGGTAGTAATGATTACAGGATGAATGTGAATAGGTGC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACCGGCAATGGTAGTAATGATTACAGGATGAATGTGAATAGGTGC  745

seq1  CTTTTCTTTATTGGTTCTTTTAAGAAATTGTAACATACCTGTAACATTTG  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTATTGGTTCTTTTAAGAAATTGTAACATACCTGTAACATTTG  795

seq1  CCAGGTTCTTGATTGAAACAAAACCAACGAGTCCCTACTTTTTATCTAAT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCTTGATTGAAACAAAACCAACGAGTCCCTACTTTTTATCTAAT  845

seq1  GGAAAGATACTAAATAGAGCAAAGACAAATTTAATTGCTAGGAGTTCTGT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATACTAAATAGAGCAAAGACAAATTTAATTGCTAGGAGTTCTGT  895

seq1  GAATTTTTTTCCCTTATGAGTACATTGCTGTCCTTTAAAACTTAGAACAG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTCCCTTATGAGTACATTGCTGTCCTTTAAAACTTAGAACAG  945

seq1  TGACCAGTGTGTTCCTTTTTGTGACATTTCTAAGAGATTTTTTTTGAAAA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTGTGTTCCTTTTTGTGACATTTCTAAGAGATTTTTTTTGAAAA  995

seq1  AGATGTAAGAGGCACTGTGGTGGTTTGATTAGGAATGGCCCCATAGAGTC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGAGGCACTGTGGTGGTTTGATTAGGAATGGCCCCATAGAGTC  1045

seq1  ATGCGTTTGAATACTTGGCCCATAGGGAGTGCACTATTAGGTGTATGGAC  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTTTGAATACTTGGCCCATAGGGAGTGCACTATTAGGTGTATGGAC  1095

seq1  TTGTTGGAGGAAGTGTGTCACTTTGGAGGGTGTCTTTGAGGTCTCCTATA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAGGAAGTGTGTCACTTTGGAGGGTGTCTTTGAGGTCTCCTATA  1145

seq1  TAAGCTCAAACAGCACCCAATGCAGAAAACAGGCTCCTCCTGTCTGCCTT  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCAAACAGCACCCAATGCAGAAAACAGGCTCCTCCTGTCTGCCTT  1195

seq1  TGGATCAAGATGTAGAATTC  1196
      ||||||||||||||||||||
seq2  TGGATCAAGATGTAGAATTC  1215

seq1: chr8_69370305_69371394
seq2: B6Ng01-205G02.g_69_1156

seq1  GAATTCTCACCCCTACCTAGCAGATAGACACTATAGCCGTGAGCAGCGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCCTACCTAGCAGATAGACACTATAGCCGTGAGCAGCGCT  50

seq1  ACTCTGACCATGGGTCTGATTATCATTACAGAGGAGGCCGGGAGGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACCATGGGTCTGATTATCATTACAGAGGAGGCCGGGAGGATTTC  100

seq1  TACTATGACGACAGGAATCATGATGGCTGGAGCCATGACTACGATAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGACGACAGGAATCATGATGGCTGGAGCCATGACTACGATAACAG  150

seq1  AAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCAAGCATTCCAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCAAGCATTCCAAGGA  200

seq1  CACTGTTCTCAGGGCCATTTTAGGTCCTTTTAATTAAGTTGTTGCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCTCAGGGCCATTTTAGGTCCTTTTAATTAAGTTGTTGCAGAAA  250

seq1  TATTTCTAAATCTGTACAGAGTAATCCCACAATTTTCCACTTGTCTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAATCTGTACAGAGTAATCCCACAATTTTCCACTTGTCTTTGA  300

seq1  AAAAAATTAAACCTAGTAACAATTTGACAGAGAACTGAGAACTGTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAACCTAGTAACAATTTGACAGAGAACTGAGAACTGTGGCTC  350

seq1  TTTGTGTGCTACTGTAATTAGCTAACCTCAGGGGTTCTGATAGAGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGCTACTGTAATTAGCTAACCTCAGGGGTTCTGATAGAGGAAGG  400

seq1  TTCATACAAAAGAATATGTCAACATTCTGGTCATTTCAGACAGAAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAAAAGAATATGTCAACATTCTGGTCATTTCAGACAGAAAGATG  450

seq1  AACTGTATAGATTGGTTGTATTTTAAAGCAAATATTTTAATTATCTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATAGATTGGTTGTATTTTAAAGCAAATATTTTAATTATCTCATA  500

seq1  ATTGGTGTAGCAAGAAATTTCTTGGTAATAAATCAATTTGGTGTATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTAGCAAGAAATTTCTTGGTAATAAATCAATTTGGTGTATATAA  550

seq1  AAGGAAACATCTAAGTTGGTAGTCTGAAATGTCTGTCTGCATTTTGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACATCTAAGTTGGTAGTCTGAAATGTCTGTCTGCATTTTGTTAA  600

seq1  TAAATGAGAAAGACAGAACTTCTCTGTTTATTAATAGTTTATTTAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGAAAGACAGAACTTCTCTGTTTATTAATAGTTTATTTAAAACA  650

seq1  GTGTATTGGCTTTATTTGGAGATAAATCATATTTTCTAACTCAGAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGGCTTTATTTGGAGATAAATCATATTTTCTAACTCAGAATTTA  700

seq1  AGAATAAATTCTGTGGTATGCTCTTGAATTTTATCACAATTGAACATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATTCTGTGGTATGCTCTTGAATTTTATCACAATTGAACATACA  750

seq1  -TTATAAATCTTTACTAGTTCGTTCTAAGCACTTTAAAATT--CTTTCAT  797
       ||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TTTATAAATCTTTACTAGTTCGTTCTAAGCACTTTAAAATTTCTTTTCAT  800

seq1  TATATTTGATGTATGAGTAGTCATTCAGGAAGTTAAATATCTACAATGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGATGTATGAGTAGTCATTCAGGAAGTTAAATATCTACAATGTA  850

seq1  TATTTTTACAT-AAAATGACAGTGTTGGTGAAAATTCTTTTTAGAATGAT  896
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACATAAAAATGACAGTGTTGGTGAAAATTCTTTTTAGAATGAT  900

seq1  GTTAATACATAGAGAAAATGGCAAAGTGTTTCACTGCAAGAATTGTAATT  946
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GTTAATACATAGAGAAAATGGC-AAGTG-TTCACTGCAAGAATTGTAATT  948

seq1  TTGAAATTTTGTTTAACAAAACTTCCATGTTTCAAGATCCTGTT-GCTCT  995
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TTGAAATTTTGGTTAACAAAACTTCCATGTTTCAAGATCCTGTTGGCTCT  998

seq1  TTCACTGCAAAATCGTTTCCAAGAATTCATTCCATGAAAAATGTGGATCC  1045
      ||||||||||||||||||||||||||||||| |||| ||||||| |||||
seq2  TTCACTGCAAAATCGTTTCCAAGAATTCATT-CATGGAAAATGT-GATCC  1046

seq1  TCTTTATATCACAGCACTTATACTATTTTCTTTTTAATATATTAA  1090
      |||||||||   ||||| |||||||  ||||||| ||||||||||
seq2  TCTTTATATGCAAGCAC-TATACTA--TTCTTTTAAATATATTAA  1088