BAC Information

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BAC

Clone NameB6Ng01-206A09
Chromosome8 (Build37)
Map Location 23,647,453 - 23,823,044
singlet/doubletdoublet
Overlap geneSlc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb
Upstream geneLOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807
Downstream genePlat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206A09.bB6Ng01-206A09.g
ACCGA025549GA025550
length996487
definitionB6Ng01-206A09.b B6Ng01-206A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,647,453 - 23,648,452)(23,822,551 - 23,823,044)
sequence
gaattccagcctgggcatccatgctctcctgtaaatacccacatcagcag
acaagccttgcttcctgccatcagaagaagctcactaagagctggcaagc
ctcctcccctccacttcctgtcctcactcagcacctgcccttcctcatac
ctccccctacccctcacttaatcatccagacagtgcctcacacctcaaag
aagcctgcctcccatctcctcccgttcacttggtatctttgtcccagagt
ctgtccctttctgctttgtaggatatctttcttcagtttcctttgtatga
ccctgtacccttccgcagttccaagagtgaggcggctcccacgcactgcc
tgactcccatgcagacacacttcatgctgctccttcactctgtccctctg
tctctccttcttcccacaacccccacctcattacaatgtataaactcagc
aagaaaaatgatgggggctctcatgagggaaagtagagtccacgtgtgac
agggtgagttccaagcatccgcccacaccaccgggttcactttataggac
cgttataaaaccataaagttaacactcttcttccattccagctctgcgct
aggaaacaggatcctaactgtggcttttcgtggaagtcagccagttactg
ctggcccaggtcgcagaggtagagtccagggaactgtccaatatcccaaa
gtcttgccaccttacggtagcacatgactggttctatcttcattcaacac
acacttcagagatgtatatagctccccacccaaccttgactcaaaggccg
gcatgcccggccttggctgaagcagctgtccactttgcctcatacactag
gacctgtgtggccttagatgactctcttgctgctcagatatctttgaaga
aaaggccaggggggtgcttagacactgtgctgccagaaacttggatttta
gagtaacatttgggaataacagtccactttatcagcctagcccttt
ctttattacatcactcaggttgtttcctgggtaattctaaagctcttaag
ttgataacatcaaaccattacaaaggcagaacacttgtctagcacgctca
agactcctattttaatcttcagtaccgaaaagagaaataacagacttagt
ttcatttaaatctctgttcatgccaaaagatttaatgaccattttataaa
aagtgattttagtacatctaatgtcttatatatttgtgactggaaatgtg
catgtatgtgtgtgtgtatatactatatatgtgtgtgtgtgtgtgtatat
atatatataatgaagtatgcaaaatcttgagagttaaagcatataaatgc
aatctattcaaagtgacgagtaagccttctgtgtggaagacatgaatcat
attgagatgcaacgggtgtcagtagagttctttcggctctctactgtttt
aatgagtaccattcaattgaaaatatgccatttggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23647453_23648452
seq2: B6Ng01-206A09.b_46_1041

seq1  GAATTCCAGCCTGGGCATCCATGCTCTCCTGTAAATACCCACATCAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTGGGCATCCATGCTCTCCTGTAAATACCCACATCAGCAG  50

seq1  ACAAGCCTTGCTTCCTGCCATCAGAAGAAGCTCACTAAGAGCTGGCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTTGCTTCCTGCCATCAGAAGAAGCTCACTAAGAGCTGGCAAGC  100

seq1  CTCCTCCCCTCCACTTCCTGTCCTCACTCAGCACCTGCCCTTCCTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCTCCACTTCCTGTCCTCACTCAGCACCTGCCCTTCCTCATAC  150

seq1  CTCCCCCTACCCCTCACTTAATCATCCAGACAGTGCCTCACACCTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTACCCCTCACTTAATCATCCAGACAGTGCCTCACACCTCAAAG  200

seq1  AAGCCTGCCTCCCATCTCCTCCCGTTCACTTGGTATCTTTGTCCCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCCTCCCATCTCCTCCCGTTCACTTGGTATCTTTGTCCCAGAGT  250

seq1  CTGTCCCTTTCTGCTTTGTAGGATATCTTTCTTCAGTTTCCTTTGTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTTTCTGCTTTGTAGGATATCTTTCTTCAGTTTCCTTTGTATGA  300

seq1  CCCTGTACCCTTCCGCAGTTCCAAGAGTGAGGCGGCTCCCACGCACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACCCTTCCGCAGTTCCAAGAGTGAGGCGGCTCCCACGCACTGCC  350

seq1  TGACTCCCATGCAGACACACTTCATGCTGCTCCTTCACTCTGTCCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCATGCAGACACACTTCATGCTGCTCCTTCACTCTGTCCCTCTG  400

seq1  TCTCTCCTTCTTCCCACAACCCCCACCTCATTACAATGTATAAACTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTCTTCCCACAACCCCCACCTCATTACAATGTATAAACTCAGC  450

seq1  AAGAAAAATGATGGGGGCTCTCATGAGGGAAAGTAGAGTCCACGTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGATGGGGGCTCTCATGAGGGAAAGTAGAGTCCACGTGTGAC  500

seq1  AGGGTGAGTTCCAAGCATCCGCCCACACCACCGGGTTCACTTTATAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGTTCCAAGCATCCGCCCACACCACCGGGTTCACTTTATAGGAC  550

seq1  CGTTATAAAACCATAAAGTTAACACTCTTCTTCCATTCCAGCTCTGCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATAAAACCATAAAGTTAACACTCTTCTTCCATTCCAGCTCTGCGCT  600

seq1  AGGAAACAGGATCCTAACTGTGGCTTTTCGTGGAAGTCAGCCAGTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAGGATCCTAACTGTGGCTTTTCGTGGAAGTCAGCCAGTTACTG  650

seq1  CTGGCCCAGGTCGCAGAGGTAGAGTCCAGGGAACTGTCCAATATCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGGTCGCAGAGGTAGAGTCCAGGGAACTGTCCAATATCCCAAA  700

seq1  GTCTTGCCACCTTACGGTAGCACATGACTGGTTCTATCTTCATTCAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCACCTTACGGTAGCACATGACTGGTTCTATCTTCATTCAACAC  750

seq1  ACACTTCAGAGATGTATATAGCTCCCCACCCAACCTTGACTCAAAGGCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGAGATGTATATAGCTCCCCACCCAACCTTGACTCAAAGGCCG  800

seq1  GCATGCCCGGCCTTGGCTGAAGCAGCTGTCCACTTTGCCTCATACACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCGGCCTTGGCTGAAGCAGCTGTCCACTTTGCCTCATACACTAG  850

seq1  GACCTGTGTGGCCTTAGATGACTCTCTTGCTGCTCAGATATCTTTGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGTGGCCTTAGATGACTCTCTTGCTGCTCAGATATCTTTGAAGA  900

seq1  AAAGGCCAGGGGGGTGCTTAAGGACACTGTGCTGCCAGGAAACCTGATTT  950
      ||||||||||||||||||||  ||||||||||||||| ||||| ||  ||
seq2  AAAGGCCAGGGGGGTGCTTA--GACACTGTGCTGCCA-GAAACTTGGATT  947

seq1  TCAGAGTTAACATTTGGGATTAACAGTCCACTTTATCAGCCTAGCCCTTT  1000
      | |||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAGAG-TAACATTTGGGAATAACAGTCCACTTTATCAGCCTAGCCCTTT  996

seq1: chr8_23822551_23823044
seq2: B6Ng01-206A09.g_69_561 (reverse)

seq1  TCCCAAATGGCATATTTTCAATTGAATGGTACTCATTAAAACAGTAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGGCATATTTTCAATTGAATGGTACTCATTAAAACAGTAGAGA  50

seq1  TGCCGAAAGAACTCTACTGACACCCGTTGCATCTCAATATGATTCATGTC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GCCGAAAGAACTCTACTGACACCCGTTGCATCTCAATATGATTCATGTC  99

seq1  TTCCACACAGAAGGCTTACTCGTCACTTTGAATAGATTGCATTTATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACAGAAGGCTTACTCGTCACTTTGAATAGATTGCATTTATATGC  149

seq1  TTTAACTCTCAAGATTTTGCATACTTCATTATATATATATATACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTCAAGATTTTGCATACTTCATTATATATATATATACACACAC  199

seq1  ACACACACATATATAGTATATACACACACACATACATGCACATTTCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATATAGTATATACACACACACATACATGCACATTTCCAGT  249

seq1  CACAAATATATAAGACATTAGATGTACTAAAATCACTTTTTATAAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATATAAGACATTAGATGTACTAAAATCACTTTTTATAAAATGG  299

seq1  TCATTAAATCTTTTGGCATGAACAGAGATTTAAATGAAACTAAGTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATCTTTTGGCATGAACAGAGATTTAAATGAAACTAAGTCTGTT  349

seq1  ATTTCTCTTTTCGGTACTGAAGATTAAAATAGGAGTCTTGAGCGTGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTTCGGTACTGAAGATTAAAATAGGAGTCTTGAGCGTGCTAG  399

seq1  ACAAGTGTTCTGCCTTTGTAATGGTTTGATGTTATCAACTTAAGAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTCTGCCTTTGTAATGGTTTGATGTTATCAACTTAAGAGCTTT  449

seq1  AGAATTACCCAGGAAACAACCTGAGTGATGTAATAAAGGAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACCCAGGAAACAACCTGAGTGATGTAATAAAGGAATTC  493