BAC Information

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BAC

Clone NameB6Ng01-206F12
Chromosome8 (Build37)
Map Location 13,785,605 - 13,914,506
singlet/doubletdoublet
Overlap geneUpf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25
Upstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16
Downstream geneLOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206F12.bB6Ng01-206F12.g
ACCGA025785GA025786
length9961,090
definitionB6Ng01-206F12.b B6Ng01-206F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,785,605 - 13,786,590)(13,913,425 - 13,914,506)
sequence
gaattccaagggaggggctgcctagtcctcgcgaggcttcgttctcgcgg
aggtggcggcggccggccggccggtggggatgcgctcggaagagggggcc
ggaggcttaggcgcagccctggctgcgcggggcccgagctggagggagaa
actatcgagctcagagacccactgccgccgcgagtcaccgcggaaggagt
cggcggcgcctccggccccgaccctaagtgagagcggggccggcaagcct
cgcgaggagaagaggacagccctgagcaaggtgggggcggggcccgcaag
tctcgcgagaggacggcttctaagccccccggtgggcggggcttggggag
ggcggggcgggttgctcatctcaggggcggagcctagtctccgaagtgat
gcgggctgttgcgagcagtctggactaggattagcgagtcggggtggagc
tggggagccgcggtcccccgagctccggggaacctcaggctgagtgggcg
tggcgggcggcagcacctgagtgaacgcaatggtcatcccaggtggtcct
ccggcgtctgcccccgggcctcaccaaagagcagctggaagagcaactgc
gccccctgccggcgcacgattacttcgaggtggtggctgcggacctcagg
tgagggctgctgcgggacacccactggtgaaggatggaggaccccgcggg
cgctcgcagttgcagtccccctcccagctgtcagtgcacgcccacgttta
ggagcgggcaagtcacctcgtcagcccgttaccatgccttccctcggcgt
agcctttaataaactgtatgatgagcaaaaccgggactgcatcccttaca
cacgttggagtctggagtgttttcccctagtgagggaccagtaactgaag
ccctgagaagtggaaatctctcattgctttgcccaccacccagccagaag
gttccctgtcctgtgggtgatgcgaagcacgcatggctgacctaag
gaattccattctaaacagcggtccccaccccttccacccctgtgcagtgg
tatgtggcaaccaactgaatcaatccccgcttattccagacatcagagac
agaacgtcggagtggactatggtcaggaagtcagacaaggcatgagacca
gaagaaggaaggagcctggcttcattctaagaaaaccagaggcaggcagt
tggaaggcaaacgatctgatcagacctgtgctttacactgagtcaagggc
agcggactgggggtgcaacccgagccacactgaagcagtcagtcaggcac
aatggtgccatgtaggtgctgggaagtgaacctaggccgtctgcaagagc
agcaagtgctcctaaccactgagctctccggcaggcacacagcagagcag
caggcttgggagtggcaggggcagggatgcccactgagtattaaggtcca
aaggtgactcgcatacatactgaatgtaaaaaacagccccagctagtcac
gcttacatattcaagatgccgtctccctacagaggcttagctggtctctt
catgcaaacaaggcccttccacatctccacccgcttcatccgtctctgcc
actgtcacctgaaatcatttatcttctcctccaagagaatgcaatgtctt
gcttagtgttctacccaattaccagagcaatttcaggcacagccagagtt
cagtaaacatatctcagaagcgcatggcatcctacgactcagcagcatgg
gaaaaacgaaagtggcagaggaaggagttctagatggctcagcgggtaag
agcactgactgctcttccagaggtcctgagttcaattcccagcaaccaca
tgggaggtttcacaaccatctgtagtgggatcccatgccctcttctggtg
agtcttgaagacagccttcagtgtaccttacataaataaaataaaccttt
agaaaaaaaagaaagaacaacaacgggtgacgggaaatgaatggagaaca
agtcaagggaaaggacctgcgagaaaaaccttgaagctgtggaaaagaaa
gcaggaccaacccaagagctcatttagagaaaggatgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13785605_13786590
seq2: B6Ng01-206F12.b_44_1039

seq1  GAATTCCAAGGGAGGGGCTGCCTAGTCCTCGCGAGGCTTCGTTCTCGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGAGGGGCTGCCTAGTCCTCGCGAGGCTTCGTTCTCGCGG  50

seq1  AGGTGGCGGCGGCCGGCCGGCCGGTGGGGATGCGCTCGGAAGAGGGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCGGCGGCCGGCCGGCCGGTGGGGATGCGCTCGGAAGAGGGGGCC  100

seq1  GGAGGCTTAGGCGCAGCCCTGGCTGCGCGGGGCCCGAGCTGGAGGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTAGGCGCAGCCCTGGCTGCGCGGGGCCCGAGCTGGAGGGAGAA  150

seq1  ACTATCGAGCTCAGAGACCCACTGCCGCCGCGAGTCACCGCGGAAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCGAGCTCAGAGACCCACTGCCGCCGCGAGTCACCGCGGAAGGAGT  200

seq1  CGGCGGCGCCTCCGGCCCCGACCCTAAGTGAGAGCGGGGCCGGCAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCGCCTCCGGCCCCGACCCTAAGTGAGAGCGGGGCCGGCAAGCCT  250

seq1  CGCGAGGAGAAGAGGACAGCCCTGAGCAAGGTGGGGGCGGGGCCCGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGAGAAGAGGACAGCCCTGAGCAAGGTGGGGGCGGGGCCCGCAAG  300

seq1  TCTCGCGAGAGGACGGCTTCTAAGCCCCCCGGTGGGCGGGGCTTGGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCGAGAGGACGGCTTCTAAGCCCCCCGGTGGGCGGGGCTTGGGGAG  350

seq1  GGCGGGGCGGGTTGTTCATCTCAGGGGCGGAGCCTAGTCTCCGAAGTGAT  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCGGGGCGGGTTGCTCATCTCAGGGGCGGAGCCTAGTCTCCGAAGTGAT  400

seq1  GCGGGCTGTTGCGAGCAGTCTGGACTAGGATTAGCGAGTCGGGGTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTGTTGCGAGCAGTCTGGACTAGGATTAGCGAGTCGGGGTGGAGC  450

seq1  TGGGGAGCCGCGGTCCCCCGAGCTCCGGGGAACCTCAGGCTGAGTGGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCCGCGGTCCCCCGAGCTCCGGGGAACCTCAGGCTGAGTGGGCG  500

seq1  TGGCGGGCGGCAGCACCTGAGTGAACGCAATGGTCATCCCAGGTGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGCGGCAGCACCTGAGTGAACGCAATGGTCATCCCAGGTGGTCCT  550

seq1  CCGGCGTCTGCCCCCGGGCCTCACCAAAGAGCAGCTGGAAGAGCAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGTCTGCCCCCGGGCCTCACCAAAGAGCAGCTGGAAGAGCAACTGC  600

seq1  GCCCCCTGCCGGCGCACGATTACTTCGAGGTGGTGGCTGCGGACCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTGCCGGCGCACGATTACTTCGAGGTGGTGGCTGCGGACCTCAGG  650

seq1  TGAGGGCTGCTGCGGGACACCCACTGGTGAAGGATGGAGGACCCCGCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTGCTGCGGGACACCCACTGGTGAAGGATGGAGGACCCCGCGGG  700

seq1  CGCTCGCAGTTGCAGT-CCCCTCCCAGCTGTCAGTGCACGCCCACG-TTA  748
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CGCTCGCAGTTGCAGTCCCCCTCCCAGCTGTCAGTGCACGCCCACGTTTA  750

seq1  GGAGCGGGCAAGTCACCTCGTCAGCCCGTTACCATGCCTT-CCTCGGCGT  797
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGCGGGCAAGTCACCTCGTCAGCCCGTTACCATGCCTTCCCTCGGCGT  800

seq1  AGCTTTTAATAAACTGTATGATGAGCAAAACC-GGACTGCATCCCTTACA  846
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCCTTTAATAAACTGTATGATGAGCAAAACCGGGACTGCATCCCTTACA  850

seq1  CACGTT-GAGTCTGGAGTGTTTT-CCCTAGTGAGGGACCAGTAACTG-AG  893
      |||||| |||||||||||||||| ||||||||||||||||||||||| ||
seq2  CACGTTGGAGTCTGGAGTGTTTTCCCCTAGTGAGGGACCAGTAACTGAAG  900

seq1  CCCTGAGAAGTGG-AATCTCTCATTGCTTGCACCACCACCCAGCCAGAAG  942
      ||||||||||||| |||||||||||||||   ||||||||||||||||||
seq2  CCCTGAGAAGTGGAAATCTCTCATTGCTTTGCCCACCACCCAGCCAGAAG  950

seq1  GTTCCCTG-CCTGTGGG-GATGCGAGCAACGCAGGGCTGACCTAAG  986
      |||||||| |||||||| |||||||   ||||| ||||||||||||
seq2  GTTCCCTGTCCTGTGGGTGATGCGAAGCACGCATGGCTGACCTAAG  996

seq1: chr8_13913425_13914506
seq2: B6Ng01-206F12.g_68_1157 (reverse)

seq1  TGTCATCCCTTTCTCTAAATGTGCTCTTTGGTTGGCTCCTGCCTTTCTCT  50
      |||||| |||||||||||||| |||||| |||||| |||||| ||  | |
seq2  TGTCAT-CCTTTCTCTAAATGAGCTCTTGGGTTGG-TCCTGCTTTCTTTT  48

seq1  CCACAGCCTCA--GTCTTCTTCGCAGGTCCCTTCCC-TGGCTTG-TCTCC  96
      ||||||| |||  || ||  |||||||||| ||||| || |||| |||||
seq2  CCACAGCTTCAAGGTTTTTCTCGCAGGTCCTTTCCCTTGACTTGTTCTCC  98

seq1  ATCCATTTCCCGTCACCCGTTG-TGTTCTTTCTTTTTTTTCTAAAGGTTT  145
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTCATTTCCCGTCACCCGTTGTTGTTCTTTCTTTTTTTTCTAAAGGTTT  148

seq1  ATTTTATTTATGTAA-GTACACTG-AGGCTGTCTTC-AGACTCACCAGAA  192
      ||||||||||||||| |||||||| ||||||||||| |||||||||||||
seq2  ATTTTATTTATGTAAGGTACACTGAAGGCTGTCTTCAAGACTCACCAGAA  198

seq1  GAGGGCATGGGATCCCACTACAGATGGTTGTG-AACCT-CCATGTGGTTG  240
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GAGGGCATGGGATCCCACTACAGATGGTTGTGAAACCTCCCATGTGGTTG  248

seq1  CTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTACCCG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTACCCG  298

seq1  CTGAGCCATCTAGAACTCCTTCCTCTGCCACCTTCGTTTTTCCCATGCTG  340
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGAGCCATCTAGAACTCCTTCCTCTGCCACTTTCGTTTTTCCCATGCTG  348

seq1  CTGAGTCGTAGGATGCCATGCGCTTCTGAGATATGTTTACTGAACTCTGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCGTAGGATGCCATGCGCTTCTGAGATATGTTTACTGAACTCTGG  398

seq1  CTGTGCCTGAAATTGCTCTGGTAATTGGGTAGAACACTAAGCAAGACATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTGAAATTGCTCTGGTAATTGGGTAGAACACTAAGCAAGACATT  448

seq1  GCATTCTCTTGGAGGAGAAGATAAATGATTTCAGGTGACAGTGGCAGAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCTTGGAGGAGAAGATAAATGATTTCAGGTGACAGTGGCAGAGA  498

seq1  CGGATGAAGCGGGTGGAGATGTGGAAGGGCCTTGTTTGCATGAAGAGACC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGAAGCGGGTGGAGATGTGGAAGGGCCTTGTTTGCATGAAGAGACC  548

seq1  AGCTAAGCCTCTGTAGGGAGACGGCATCTTGAATATGTAAGCGTGACTAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGCCTCTGTAGGGAGACGGCATCTTGAATATGTAAGCGTGACTAG  598

seq1  CTGGGGCTGTTTTTTACATTCAGTATGTATGCGAGTCACCTTTGGACCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGTTTTTTACATTCAGTATGTATGCGAGTCACCTTTGGACCTT  648

seq1  AATACTCAGTGGGCATCCCTGCCCCTGCCACTCCCAAGCCTGCTGCTCTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAGTGGGCATCCCTGCCCCTGCCACTCCCAAGCCTGCTGCTCTG  698

seq1  CTGTGTGCCTGCCGGAGAGCTCAGTGGTTAGGAGCACTTGCTGCTCTTGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCTGCCGGAGAGCTCAGTGGTTAGGAGCACTTGCTGCTCTTGC  748

seq1  AGACGGCCTAGGTTCACTTCCCAGCACCTACATGGCACCATTGTGCCTGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCCTAGGTTCACTTCCCAGCACCTACATGGCACCATTGTGCCTGA  798

seq1  CTGACTGCTTCAGTGTGGCTCGGGTTGCACCCCCAGTCCGCTGCCCTTGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCTTCAGTGTGGCTCGGGTTGCACCCCCAGTCCGCTGCCCTTGA  848

seq1  CTCAGTGTAAAGCACAGGTCTGATCAGATCGTTTGCCTTCCAACTGCCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTAAAGCACAGGTCTGATCAGATCGTTTGCCTTCCAACTGCCTG  898

seq1  CCTCTGGTTTTCTTAGAATGAAGCCAGGCTCCTTCCTTCTTCTGGTCTCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTTTTCTTAGAATGAAGCCAGGCTCCTTCCTTCTTCTGGTCTCA  948

seq1  TGCCTTGTCTGACTTCCTGACCATAGTCCACTCCGACGTTCTGTCTCTGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCTGACTTCCTGACCATAGTCCACTCCGACGTTCTGTCTCTGA  998

seq1  TGTCTGGAATAAGCGGGGATTGATTCAGTTGGTTGCCACATACCACTGCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAATAAGCGGGGATTGATTCAGTTGGTTGCCACATACCACTGCA  1048

seq1  CAGGGGTGGAAGGGGTGGGGACCGCTGTTTAGAATGGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGGAAGGGGTGGGGACCGCTGTTTAGAATGGAATTC  1090