BAC Information

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BAC

Clone NameB6Ng01-208H19
Chromosome8 (Build37)
Map Location 73,394,863 - 73,395,625
singlet/doubletsinglet
Overlap geneCcdc124
Upstream genePbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011
Downstream geneSlc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H19.bB6Ng01-208H19.g
ACCGA027356GA027357
length7631,198
definitionB6Ng01-208H19.b B6Ng01-208H19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctggctgctgtcactcagcactgggttttgtgtcgtgtcag
agcctctggtggcatatgttgtatggagcatatctaaccgtccaccaagg
tatgggcttttacaagtcacagtgtactggaaccctgcaaggtgggtgat
ggctgttggggtgtcctattttagactgtgtagatgggggacactctgtg
gcctgtgagcctacactggaccccaccagatgaaaggacacacagccaat
gtgcctggaagagacattgtagtagactgactccacggtaggcccccaga
acctcaactgtggggtgctcaggcatccccagggtaagtgaccaaactga
ggagtctggccttcaggtgaggggagcacccctgttcctgtcaggtgtgg
tggtgtgtccctgggaggctgaggcatggggaccagaagtttcaggccat
cttagctacacaaagaaagaaccacacccagcatgcactggctcaagggc
tgcagcccactgggcctcagacttatgcaccgagctcccgcccagtgctt
cagagtgagggagacagttctgagtggccggggaccaccagggaattccc
accctcaggccctctgttccctctacaggagaccctgtgcatcctatcag
gagacactccccacagacagctcagagcatgcaaaggtccagtggcagga
atgaggctgtgtgttcattggggtccatggaagctctggtgggtgagtga
ggggtaggaaaaa
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttctgcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcgcaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccactgttgatg
ggattgcaagcttgtacaactactctggaaatcagtctggtggttcctca
gaaaattggatatagtcctaccggaggatcccgcaatacctctcctgggc
atatatccagaagattttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gactactactcagctattaaaaggaatgaatttatgaaattcctagccaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcagatgatatgtattcactgataagtggatattagcccagaaac
ttagtatacccgagatataagatataatttgcaaaacacatgaaactgaa
gaagaacgaagaccacagtgtggatactttgtccctttttagaattggaa
acaatcacccttggaaggagttacagagacaaagtttggagctgagacaa
aagtatggaccctctagagactgccatatccagggatccatcccataatt
agcctccaaacgatgacaccattgcatacacttgcaagcgtttgctaaaa
agaccctgatatagctgtctcttgtgagactatgtcgctgcctagcaaca
cataagtggatgctcacagtcagctattggatggatcatagggccccaat
ggaggagctagagaaagtatccaaggagataaagagatctgcaaccctgt
aggtgcacaatattatgaactaaaccagtttcccggagctctgaactcta
gctgcatatgtatcaaaaagattgtcctagtcagcaatcacctggtaaag
aaaggtccaatggaacttggcaacttttatattgctcagttacaggaaca
tcagtctaaaaagtgggtaatgcgctgcgctagatagacatgacacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_73394863_73395625
seq2: B6Ng01-208H19.b_47_809

seq1  GAATTCTGTCTGGCTGCTGTCACTCAGCACTGGGTTTTGTGTCGTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGGCTGCTGTCACTCAGCACTGGGTTTTGTGTCGTGTCAG  50

seq1  AGCCTCTGGTGGCATATGTTGTATGGAGCATATCTAACCGTCCACCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGTGGCATATGTTGTATGGAGCATATCTAACCGTCCACCAAGG  100

seq1  TATGGGCTTTTACAAGTCACAGTGTACTGGAACCCTGCAAGGTGGGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTTTTACAAGTCACAGTGTACTGGAACCCTGCAAGGTGGGTGAT  150

seq1  GGCTGTTGGGGTGTCCTATTTTAGACTGTGTAGATGGGGGACACTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGGGGTGTCCTATTTTAGACTGTGTAGATGGGGGACACTCTGTG  200

seq1  GCCTGTGAGCCTACACTGGACCCCACCAGATGAAAGGACACACAGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGCCTACACTGGACCCCACCAGATGAAAGGACACACAGCCAAT  250

seq1  GTGCCTGGAAGAGACATTGTAGTAGACTGACTCCACGGTAGGCCCCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGAAGAGACATTGTAGTAGACTGACTCCACGGTAGGCCCCCAGA  300

seq1  ACCTCAACTGTGGGGTGCTCAGGCATCCCCAGGGTAAGTGACCAAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACTGTGGGGTGCTCAGGCATCCCCAGGGTAAGTGACCAAACTGA  350

seq1  GGAGTCTGGCCTTCAGGTGAGGGGAGCACCCCTGTTCCTGTCAGGTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGGCCTTCAGGTGAGGGGAGCACCCCTGTTCCTGTCAGGTGTGG  400

seq1  TGGTGTGTCCCTGGGAGGCTGAGGCATGGGGACCAGAAGTTTCAGGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCCCTGGGAGGCTGAGGCATGGGGACCAGAAGTTTCAGGCCAT  450

seq1  CTTAGCTACACAAAGAAAGAACCACACCCAGCATGCACTGGCTCAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTACACAAAGAAAGAACCACACCCAGCATGCACTGGCTCAAGGGC  500

seq1  TGCAGCCCACTGGGCCTCAGACTTATGCACCGAGCTCCCGCCCAGTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCACTGGGCCTCAGACTTATGCACCGAGCTCCCGCCCAGTGCTT  550

seq1  CAGAGTGAGGGAGACAGTTCTGAGTGGCCGGGGACCACCAGGGAATTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGGGAGACAGTTCTGAGTGGCCGGGGACCACCAGGGAATTCCC  600

seq1  ACCCTCAGGCCCTCTGTTCCCTCTACAGGAGACCCTGTGCATCCTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGGCCCTCTGTTCCCTCTACAGGAGACCCTGTGCATCCTATCAG  650

seq1  GAGACACTCCCCACAGACAGCTCAGAGCATGCAAAGGTCCAGTGGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTCCCCACAGACAGCTCAGAGCATGCAAAGGTCCAGTGGCAGGA  700

seq1  ATGAGGCTGTGTGTTCATTGGGGTCCATGGAAGCTCTGGTGGGTGAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTGTGTGTTCATTGGGGTCCATGGAAGCTCTGGTGGGTGAGTGA  750

seq1  GGGGTAGGAAAGA  763
      ||||||||||| |
seq2  GGGGTAGGAAAAA  763