BAC Information

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BAC

Clone NameB6Ng01-208H22
Chromosome8 (Build37)
Map Location 92,489,360 - 92,665,918
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H22.bB6Ng01-208H22.g
ACCGA027362GA027363
length1,087982
definitionB6Ng01-208H22.b B6Ng01-208H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,664,837 - 92,665,918)(92,489,360 - 92,490,328)
sequence
gaattctgctgtactgctttctctgacactcacatctacactccccacca
gagaatccagctgtctctaccggagcttcctcttgtaccttgagctcacc
attctgtcaatgaaacaagtgtagctaactgggggagggggactcctcct
atttgtttccaacctcccggggacaactattcctattgacaaacatccaa
tgtcctgagaattatgggaaaataggggcaaaaaatgtctattactctct
cttgtctggaaatcaatatcacatagattatgcttaatggttgacttgta
atagctgtgaagtgtctactgattatgtaatctccttagagtgtaaatct
cttgggatgacgtagcacagtgagggcatatttgttgcatatctgttaga
aaaggtaaagaacatttcaatttaaaagtgacctgacatacaatatgtct
gtgcagcaattaagtatgtgaatcctgatttatttttcagaactctgttg
agcttatcacaacgtctgtgatcatatccccaggctacaggataattgct
gaggatagaccatatagggtggaaacagaataaggaataatatgaacatg
gaaagttctagaacagatgagcagttttttctgtgtcgtaaaggtgatgc
tcacgattaaagagaagaagcccatttggacagagagatcagtggctaag
agctctggctgttttcattgaggtaggttcctagttcaattcccagcacc
cacgtggtggcaaacaaccacctgtacctccacttccataggatccaacg
cccccttccagtctgcatggatactacatgcatgtagtgcccagacatat
atgcaggcaaaatacctgtgtacatacatttaattttttaaaatatatgt
ttaataattattttctgtttaaaataagtttaattgaattaattagttct
tttttaagaattaatagataacttttaaaagagtaaacccatttcatcta
aatcagcaaaatgtatgtgttaatccgggggattcaaagtaccattattt
cattaataatgaatggagtttagccttattcactaac

gaattctaatgaaataaattcagtcaacatgtttattaacagatgtattt
acctagaaaggaaaacccaggctaaacctacctaataaatatataaattt
tattcagccatacataaacttacacacacattaaacacatatgaatgaac
ataagatatgcactaaataaactatggattaaagaaaatatatcgcaaat
gttggtgaagttccattgatctgtcatttcttactttgcttcttggatta
tcagtgcctgggtaacaaaccactgccaaattcaaactgggaggaactac
ccctcattttcttctaaatccttatagtcatgtctttgatccatcttcag
caagtttttgtgagaatatgaaatagggatccaaaataattcttgtccac
tcagaatttctcaccatttatatttaattaaaaagatttataatgggcta
gagaagcatgcacacacacacacacacacacacacacacacacacagggc
gaagaggttgtatactcctttctttcctctcactagggatcctggggcct
gaactcccatcagcagtctcatgtggcaaggcctttaattctgagccatc
acaccagctccatgcaccattttctgaaaagattcctctagtttctttca
actggttacaaatgttcatttatttctttactccccattcattccatcca
tctatccctaagaaataccccagcaccatgacaattctatcactgtcagg
tcccacaggcagagttctcaacctgtgggttgtgacccccaaagaccatt
tgaaaattaaagatatttggttataattccataacagtaaaaaaaattac
aattatgaagtagcaacaaaaataattgtatgggttgggcactcagcaca
ccaagaggaactcttttaaaggacccccagcattaggaaaggttgagtca
cctggaaaccagagtttatgattcaccatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92664837_92665918
seq2: B6Ng01-208H22.b_47_1133 (reverse)

seq1  GTTAGTG-ATAA-GCT-AACTCCATTTCATTA-TAATGAATTAATGTAAC  46
      ||||||| |||| ||| ||||||| ||||||| ||||||| |||||  ||
seq2  GTTAGTGAATAAGGCTAAACTCCA-TTCATTATTAATGAAATAATGGTAC  49

seq1  TTTAAATCCCCCGTA-TAACACATACATTTTGCTGATTTAGATGAAAATG  95
      ||| ||||||||| | |||||||||||||||||||||||||||| |||||
seq2  TTTGAATCCCCCGGATTAACACATACATTTTGCTGATTTAGATG-AAATG  98

seq1  GGTTTACTCTTTTAAAAG-TATCTATTAATTCTTAAAAAAGAACTAA-TA  143
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GGTTTACTCTTTTAAAAGTTATCTATTAATTCTTAAAAAAGAACTAATTA  148

seq1  ATTCAATTAAAACTAATTTTAAACAGAAAATAATTATTAAACATATATTT  193
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  ATTCAATT-AAACTTATTTTAAACAGAAAATAATTATTAAACATATATTT  197

seq1  T-AAAAATTAAATGTATGTACACAGGTATTTTGCCTGCATATATGTCTGG  242
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTAAATGTATGTACACAGGTATTTTGCCTGCATATATGTCTGG  247

seq1  GCACTACATGCATGTAGTATCCATGCAGACTGGAAGGGGGCGTTGGATCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACATGCATGTAGTATCCATGCAGACTGGAAGGGGGCGTTGGATCC  297

seq1  TATGGAAGTGGAGGTACAGGTGGTTGTTTGCCACCACGTGGGTGCTGGGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGTGGAGGTACAGGTGGTTGTTTGCCACCACGTGGGTGCTGGGA  347

seq1  ATTGAACTAGGAACCTACCTCAATGAAAACAGCCAGAGCTCTTAGCCACT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTAGGAACCTACCTCAATGAAAACAGCCAGAGCTCTTAGCCACT  397

seq1  GATCTCTCTGTCCAAATGGGCTTCTTCTCTTTAATCGTGAGCATCACCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCTGTCCAAATGGGCTTCTTCTCTTTAATCGTGAGCATCACCTT  447

seq1  TACGACACAGAAAAAACTGCTCATCTGTTCTAGAACTTTCCATGTTCATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACACAGAAAAAACTGCTCATCTGTTCTAGAACTTTCCATGTTCATA  497

seq1  TTATTCCTTATTCTGTTTCCACCCTATATGGTCTATCCTCAGCAATTATC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTATTCTGTTTCCACCCTATATGGTCTATCCTCAGCAATTATC  547

seq1  CTGTAGCCTGGGGATATGATCACAGACGTTGTGATAAGCTCAACAGAGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCTGGGGATATGATCACAGACGTTGTGATAAGCTCAACAGAGTT  597

seq1  CTGAAAAATAAATCAGGATTCACATACTTAATTGCTGCACAGACATATTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATAAATCAGGATTCACATACTTAATTGCTGCACAGACATATTG  647

seq1  TATGTCAGGTCACTTTTAAATTGAAATGTTCTTTACCTTTTCTAACAGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGGTCACTTTTAAATTGAAATGTTCTTTACCTTTTCTAACAGAT  697

seq1  ATGCAACAAATATGCCCTCACTGTGCTACGTCATCCCAAGAGATTTACAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAAATATGCCCTCACTGTGCTACGTCATCCCAAGAGATTTACAC  747

seq1  TCTAAGGAGATTACATAATCAGTAGACACTTCACAGCTATTACAAGTCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGAGATTACATAATCAGTAGACACTTCACAGCTATTACAAGTCAA  797

seq1  CCATTAAGCATAATCTATGTGATATTGATTTCCAGACAAGAGAGAGTAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGCATAATCTATGTGATATTGATTTCCAGACAAGAGAGAGTAAT  847

seq1  AGACATTTTTTGCCCCTATTTTCCCATAATTCTCAGGACATTGGATGTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTTGCCCCTATTTTCCCATAATTCTCAGGACATTGGATGTTT  897

seq1  GTCAATAGGAATAGTTGTCCCCGGGAGGTTGGAAACAAATAGGAGGAGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAGGAATAGTTGTCCCCGGGAGGTTGGAAACAAATAGGAGGAGTC  947

seq1  CCCCTCCCCCAGTTAGCTACACTTGTTTCATTGACAGAATGGTGAGCTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCAGTTAGCTACACTTGTTTCATTGACAGAATGGTGAGCTCA  997

seq1  AGGTACAAGAGGAAGCTCCGGTAGAGACAGCTGGATTCTCTGGTGGGGAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAGAGGAAGCTCCGGTAGAGACAGCTGGATTCTCTGGTGGGGAG  1047

seq1  TGTAGATGTGAGTGTCAGAGAAAGCAGTACAGCAGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTGAGTGTCAGAGAAAGCAGTACAGCAGAATTC  1087


seq1: chr8_92489360_92490328
seq2: B6Ng01-208H22.g_68_1047

seq1  GAATTCTAATGAAATAAATTCAGTCAACATGTTTATTAACAGATGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGAAATAAATTCAGTCAACATGTTTATTAACAGATGTATTT  50

seq1  ACCTAGAAAGGAAAACCCAGGCTAAACCTACCTAATAAATATATAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAAGGAAAACCCAGGCTAAACCTACCTAATAAATATATAAATTT  100

seq1  TATTCAGCCATACATAAACTTACACACACATTAAACACATATGAATGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGCCATACATAAACTTACACACACATTAAACACATATGAATGAAC  150

seq1  ATAAGATATGCACTAAATAAACTATGGATTAAAGAAAATATATCGCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATATGCACTAAATAAACTATGGATTAAAGAAAATATATCGCAAAT  200

seq1  GTTGGTGAAGTTCCATTGATCTGTCATTTCTTACTTTGCTTCTTGGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAAGTTCCATTGATCTGTCATTTCTTACTTTGCTTCTTGGATTA  250

seq1  TCAGTGCCTGGGTAACAAACCACTGCCAAATTCAAACTGGGAGGAACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTGGGTAACAAACCACTGCCAAATTCAAACTGGGAGGAACTAC  300

seq1  CCCTCATTTTCTTCTAAATCCTTATAGTCATGTCTTTGATCCATCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTTTCTTCTAAATCCTTATAGTCATGTCTTTGATCCATCTTCAG  350

seq1  CAAGTTTTTGTGAGAATATGAAATAGGGATCCAAAATAATTCTTGTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTTGTGAGAATATGAAATAGGGATCCAAAATAATTCTTGTCCAC  400

seq1  TCAGAATTTCTCACCATTTATATTTAATTAAAAAGATTTATAATGGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTCTCACCATTTATATTTAATTAAAAAGATTTATAATGGGCTA  450

seq1  GAGAAGCATGCACACACACACACACACACACACACACACACACACAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCATGCACACACACACACACACACACACACACACACACACAGGGC  500

seq1  GAAGAGGTTGTATACTCCTTTCTTTCCTCTCACTAGGGATCCTGGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTTGTATACTCCTTTCTTTCCTCTCACTAGGGATCCTGGGGCCT  550

seq1  GAACTCCCATCAGCAGTCTCATGTGGCAAGGCCTTTAATTCTGAGCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCATCAGCAGTCTCATGTGGCAAGGCCTTTAATTCTGAGCCATC  600

seq1  ACACCAGCTCCATGCACCATTTTCTGAAAAGATTCCTCTAGTTTCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCTCCATGCACCATTTTCTGAAAAGATTCCTCTAGTTTCTTTCA  650

seq1  ACTGGTTACAAATGTTCATTTATTTCTTTACTCCCCATTCATTCCATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTACAAATGTTCATTTATTTCTTTACTCCCCATTCATTCCATCCA  700

seq1  TCTATCCCTAAGAAATACCCCAGCACCATGACAATTCTATCACTGTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCTAAGAAATACCCCAGCACCATGACAATTCTATCACTGTCAGG  750

seq1  TCCCACAGGCAGAGTTCTCAACCTGTGGGTTGTGACCCCCAAAGACCA-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCACAGGCAGAGTTCTCAACCTGTGGGTTGTGACCCCCAAAGACCATT  800

seq1  TGAAAATTAAAGATATTTGCATTATAATT-CATAACAGT-AAAAAAATTA  847
      |||||||||||||||||||  |||||||| ||||||||| ||||||||||
seq2  TGAAAATTAAAGATATTTG-GTTATAATTCCATAACAGTAAAAAAAATTA  849

seq1  CAATTATGAAGTAGCAACAAAAATAATTGTATGG--TTGGCACTCAGCAC  895
      ||||||||||||||||||||||||||||||||||  | ||||||||||||
seq2  CAATTATGAAGTAGCAACAAAAATAATTGTATGGGTTGGGCACTCAGCAC  899

seq1  AACAAGAGGAACTCTATTAAAGGA-CCCCAGCATTAGG-AAGGTTGAGTC  943
      | ||||||||||||| |||||||| ||||||||||||| |||||||||||
seq2  ACCAAGAGGAACTCTTTTAAAGGACCCCCAGCATTAGGAAAGGTTGAGTC  949

seq1  A-CTG--AAACAGAG-TTATGA-TCACCATT  969
      | |||  || ||||| |||||| ||||||||
seq2  ACCTGGAAACCAGAGTTTATGATTCACCATT  980


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