BAC Information

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BAC

Clone NameB6Ng01-209B18
Chromosome8 (Build37)
Map Location 63,874,992 - 63,998,157
singlet/doubletdoublet
Overlap geneCbr4, Palld
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975
Downstream geneLOC100040872, BC013672, Anxa10, LOC100040775, LOC384830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209B18.bB6Ng01-209B18.g
ACCGA027814GA027815
length1,0571,138
definitionB6Ng01-209B18.b B6Ng01-209B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,997,112 - 63,998,157)(63,874,992 - 63,876,138)
sequence
gaattcttactgagggctggcagagcaggattgggaaactgtcaatcaca
gctgggaatgccagtcatcaggagaccagtattcattcaggaaatccatt
gttgagcatgctggttattaccgagccatcaaacacatgacagcgactga
caggaggttgtaaatgttcctgctgcaccaaaataagaagagagagagag
agagagagagagagagagagagagagagagagagagaacagataagcacc
cgagagcatggacgtgccgcatggctcattgtcatcattccacgatgtgt
gttgtgcatggtctagggcatcacggatgcaaaatatacaaactaaagtt
ttggcttgcccatcttctaaatgaacactttaagtgttaagttaattcac
agatataatgtataggatggcatatccagtcaacaaagaagatgatgcta
tcccgaggttgttattaactgcagttttaaaaacagaattataggccagg
tgtggtgcacaaacccttactcccagccctcagatggcagggacccaggc
cagcctgattacacacagggaaacataagccagttagcattacacagacg
ggccctgtttcagaaaaacaaggaaaggaaagaaactaaggaaaatgtgt
aatttttttaatgtacactgcatcccataggagtacaattagagcaagtc
tgatctttaaaacaaaagcaggtagcaagagtgggtgtggccgatatgct
gatatgtagcgctctgataactatctattgctctaagcagcaacatagac
atcctttcacctctgccattaaaaggatattgagagttaaataatcacta
gttgaattcactataacgatattgacctggaatagagaataatattggaa
gtcagcaggaatggtgggcacaagttcgtattcctggcactgcgtttagc
cagaaatgggaggatcaccaggtcaacagcatttcttgcctaccgtaata
attcgaacccagcctaaggccaccaagaatggaggtaaagaaaggaccct
ggtgtcc
gaattcaggccagaccacagctgcctgtacctccagcgccagggaaccca
ggactcctgccctcttcagcacggacacgttggacttgatttctagttgg
taacactccagatgaatctccgtctgagggtgccttctatgaggcttggc
ttgatggtgatgatttctttttctctcaaactaactttattccccaagaa
acttaaactcttcaatgagttctggatctcctaagacagtgtgtaacact
tgctgagcttgatccctccgggttcctaaaataacttagcaagtgtttga
tttctaagcgtgggtgtagcaggcccacaaccaaatacatagtgtggcgt
gggaacgctgtctctcagctcaccaggattttaatctcccacaagatcaa
aggtccacgtacattctcgtttaaaaatatatttctctattgactttagg
ctaccatatcaaatcattaaagatcaggaagtttgggttgtgttatagct
ttgccagaagttccctctgtaattgcctgtgtaagccaattgtgacgcag
tcctctcttcctatgtatcccactagtgaatgtgagggtcagaggaaaac
gtgttttctttctttctttcatacttaatttgtttatctattgacaactg
tactatatatatagtatatgtgccaaagcacacacgtggaagtcaaattt
gtggaatcagttttctcctaccttcacctggcaggcctggattgtaaata
ccttcacttgctgagccatctagacctttatcatcaccatcaccatcacc
atcatcatcactacacatggtgcaggagcatgcacatcgatcaggaattg
ttctcccactgtgtctcctgggtgtctaacttggatcatcctgtttaccc
agcaagtattcccactgaaccatctcgctggctcatatgaagttatttgt
aatgtgttttaaaaccccagttaaactggcccttatctagtaggatccaa
ctgacaatacttcagaaagggaacctgtctgctctgaaagaaacttggag
tgtactacgacaagatgagcaagtgtccaaggtttgcagaatgagtgact
gcgtgtgaatcccgacttggggagtcctggacttgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63997112_63998157
seq2: B6Ng01-209B18.b_47_1103 (reverse)

seq1  GGACACCTGTGTCCTTTCTTT-CCTTCCTTCTT-GTGGCC-TAGGCTGGT  47
      ||||||| | ||||||||||| ||| | ||||| |||||| |||||||| 
seq2  GGACACCAGGGTCCTTTCTTTACCTCCATTCTTGGTGGCCTTAGGCTGGG  50

seq1  GTCGAATTATTAC-GTAGCCAAG-AATGCTGTTGACCTTGTGATCCTCCC  95
       |||||||||||| |||| |||| |||||||||||||| |||||||||||
seq2  TTCGAATTATTACGGTAGGCAAGAAATGCTGTTGACCTGGTGATCCTCCC  100

seq1  ATTTCTGCCT-AACGCAGTGCCAGGATTACGGACTTGTG-CCACCATTCC  143
      ||||||| || ||||||||||||||| |||| ||||||| ||||||||||
seq2  ATTTCTGGCTAAACGCAGTGCCAGGAATACGAACTTGTGCCCACCATTCC  150

seq1  TGCTGACTTCC-ATATT-TTCTCTA-TCCAGGTC-ATATCGTTATAGTGA  189
      ||||||||||| ||||| ||||||| |||||||| |||||||||||||||
seq2  TGCTGACTTCCAATATTATTCTCTATTCCAGGTCAATATCGTTATAGTGA  200

seq1  ATTCAACTAGTGATTATTTTAACTCTCAATATCCTTTTAATGGCAGAGGT  239
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTCAACTAGTGATTA-TTTAACTCTCAATATCCTTTTAATGGCAGAGGT  249

seq1  GAAAGGATGTCTATGTTGCTGCTTAGAGCAATAGATAGTTATCAGAGCGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATGTCTATGTTGCTGCTTAGAGCAATAGATAGTTATCAGAGCGC  299

seq1  TACATATCAGCATATCGGCCACACCCACTCTTGCTACCTGCTTTTGTTTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCAGCATATCGGCCACACCCACTCTTGCTACCTGCTTTTGTTTT  349

seq1  -AAGATCAGACTTGCTCTAATTGTACTCCTATGGGATGCAGTGTACATTA  388
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAGACTTGCTCTAATTGTACTCCTATGGGATGCAGTGTACATTA  399

seq1  AAAAAATTACACATTTTCCTTAGTTTCTTTCCTTTCCTTGTTTTTCTGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTACACATTTTCCTTAGTTTCTTTCCTTTCCTTGTTTTTCTGAA  449

seq1  ACAGGGCCCGTCTGTGTAATGCTAACTGGCTTATGTTTCCCTGTGTGTAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCCCGTCTGTGTAATGCTAACTGGCTTATGTTTCCCTGTGTGTAA  499

seq1  TCAGGCTGGCCTGGGTCCCTGCCATCTGAGGGCTGGGAGTAAGGGTTTGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGCCTGGGTCCCTGCCATCTGAGGGCTGGGAGTAAGGGTTTGT  549

seq1  GCACCACACCTGGCCTATAATTCTGTTTTTAAAACTGCAGTTAATAACAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACACCTGGCCTATAATTCTGTTTTTAAAACTGCAGTTAATAACAA  599

seq1  CCTCGGGATAGCATCATCTTCTTTGTTGACTGGATATGCCATCCTATACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGATAGCATCATCTTCTTTGTTGACTGGATATGCCATCCTATACA  649

seq1  TTATATCTGTGAATTAACTTAACACTTAAAGTGTTCATTTAGAAGATGGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTGTGAATTAACTTAACACTTAAAGTGTTCATTTAGAAGATGGG  699

seq1  CAAGCCAAAACTTTAGTTTGTATATTTTGCATCCGTGATGCCCTAGACCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAAACTTTAGTTTGTATATTTTGCATCCGTGATGCCCTAGACCA  749

seq1  TGCACAACACACATCGTGGAATGATGACAATGAGCCATGCGGCACGTCCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACACACATCGTGGAATGATGACAATGAGCCATGCGGCACGTCCA  799

seq1  TGCTCTCGGGTGCTTATCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCGGGTGCTTATCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  849

seq1  CTCTCTCTCTCTCTCTCTCTTCTTATTTTGGTGCAGCAGGAACATTTACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTTCTTATTTTGGTGCAGCAGGAACATTTACA  899

seq1  ACCTCCTGTCAGTCGCTGTCATGTGTTTGATGGCTCGGTAATAACCAGCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGTCAGTCGCTGTCATGTGTTTGATGGCTCGGTAATAACCAGCA  949

seq1  TGCTCAACAATGGATTTCCTGAATGAATACTGGTCTCCTGATGACTGGCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACAATGGATTTCCTGAATGAATACTGGTCTCCTGATGACTGGCA  999

seq1  TTCCCAGCTGTGATTGACAGTTTCCCAATCCTGCTCTGCCAGCCCTCAGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCTGTGATTGACAGTTTCCCAATCCTGCTCTGCCAGCCCTCAGT  1049

seq1  AAGAATTC  1046
      ||||||||
seq2  AAGAATTC  1057

seq1: chr8_63874992_63876138
seq2: B6Ng01-209B18.g_64_1201

seq1  GAATTCAGGCCAGACCACAGCTGCCTGTACCTCCAGCGCCAGGGAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCAGACCACAGCTGCCTGTACCTCCAGCGCCAGGGAACCCA  50

seq1  GGACTCCTGCCCTCTTCAGCACGGACACGTTGGACTTGATTTCTAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTGCCCTCTTCAGCACGGACACGTTGGACTTGATTTCTAGTTGG  100

seq1  TAACACTCCAGATGAATCTCCGTCTGAGGGTGCCTTCTATGAGGCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCCAGATGAATCTCCGTCTGAGGGTGCCTTCTATGAGGCTTGGC  150

seq1  TTGATGGTGATGATTTCTTTTTCTCTCAAACTAACTTTATTCCCCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTGATGATTTCTTTTTCTCTCAAACTAACTTTATTCCCCAAGAA  200

seq1  ACTTAAACTCTTCAATGAGTTCTGGATCTCCTAAGACAGTGTGTAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACTCTTCAATGAGTTCTGGATCTCCTAAGACAGTGTGTAACACT  250

seq1  TGCTGAGCTTGATCCCTCCGGGTTCCTAAAATAACTTAGCAAGTGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTTGATCCCTCCGGGTTCCTAAAATAACTTAGCAAGTGTTTGA  300

seq1  TTTCTAAGCGTGGGTGTAGCAGGCCCACAACCAAATACATAGTGTGGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCGTGGGTGTAGCAGGCCCACAACCAAATACATAGTGTGGCGT  350

seq1  GGGAACGCTGTCTCTCAGCTCACCAGGATTTTAATCTCCCACAAGATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGCTGTCTCTCAGCTCACCAGGATTTTAATCTCCCACAAGATCAA  400

seq1  AGGTCCACGTACATTCTCGTTTAAAAATATATTTCTCTATTGACTTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACGTACATTCTCGTTTAAAAATATATTTCTCTATTGACTTTAGG  450

seq1  CTACCATATCAAATCATTAAAGATCAGGAAGTTTGGGTTGTGTTATAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATCAAATCATTAAAGATCAGGAAGTTTGGGTTGTGTTATAGCT  500

seq1  TTGCCAGAAGTTCCCTCTGTAATTGCCTGTGTAAGCCAATTGTGACGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAAGTTCCCTCTGTAATTGCCTGTGTAAGCCAATTGTGACGCAG  550

seq1  TCCTCTCTTCCTATGTATCCCACTAGTGAATGTGAGGGTCAGAGGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTCCTATGTATCCCACTAGTGAATGTGAGGGTCAGAGGAAAAC  600

seq1  GTGTTTTCTTTCTTTCTTTCATACTTAATTTGTTTATCTATTGACAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTTTCTTTCTTTCATACTTAATTTGTTTATCTATTGACAACTG  650

seq1  TACTATATATATAGTATATGTGCCAAAGCACACACGTGGAAGTCAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATATATAGTATATGTGCCAAAGCACACACGTGGAAGTCAAATTT  700

seq1  GTGGAATCAGTTTTCTCCTACCTTCACCTGGCAGGCCTGGATTGTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCAGTTTTCTCCTACCTTCACCTGGCAGGCCTGGATTGTAAATA  750

seq1  CCTTCACTTGCTGAGCCATCTAGACCTTTATCATCACCATCACCATCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTGCTGAGCCATCTAGACCTTTATCATCACCATCACCATCACC  800

seq1  ATCATCATCACTACACATGGTGCAGGAGCATGCACATCGATCAGGAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATCACTACACATGGTGCAGGAGCATGCACATCGATCAGGAATTG  850

seq1  TTCTCCCACTGTGTCTCCTGGGTGTCTAACTTGGATCATCCTGTTTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCACTGTGTCTCCTGGGTGTCTAACTTGGATCATCCTGTTTACCC  900

seq1  AGCAAGTATTCCCACTGAACCATCTCGCTGGCTCATATGAAGTTATTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTATTCCCACTGAACCATCTCGCTGGCTCATATGAAGTTATTTGT  950

seq1  AATGTGTTTTAAAACCCCAGTTAAACTGG-CCTTATCTAGTAGGATCCAA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATGTGTTTTAAAACCCCAGTTAAACTGGCCCTTATCTAGTAGGATCCAA  1000

seq1  CTGACAATACTTCAAGAAAGGGAACCTGTCTGCCTCTGAAAAGAAAC-TG  1048
      ||||||||||||| |||||||||||||||||| ||||| |||||||| ||
seq2  CTGACAATACTTC-AGAAAGGGAACCTGTCTG-CTCTG-AAAGAAACTTG  1047

seq1  GAGTGTACTTACGGACAAGATGAGCCAGTGTCCAAGTTTGGCAGAAGGGA  1098
      |||||||| ||| |||||||||||| |||||||||| || ||||||  ||
seq2  GAGTGTAC-TAC-GACAAGATGAGCAAGTGTCCAAGGTTTGCAGAA-TGA  1094

seq1  GTGACCTTGC-TGTGAATCCAGACTGTGGGGAGTGCTGGGGACTTTGCTC  1147
      |||||  ||| ||||||||| |||| |||||||| ||  |||| ||||||
seq2  GTGAC--TGCGTGTGAATCCCGACT-TGGGGAGTCCT--GGAC-TTGCTC  1138