BAC Information

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BAC

Clone NameB6Ng01-209J20
Chromosome8 (Build37)
Map Location 29,806,130 - 29,917,383
singlet/doubletdoublet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J20.bB6Ng01-209J20.g
ACCGA028185GA028186
length1,1621,077
definitionB6Ng01-209J20.b B6Ng01-209J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,806,130 - 29,807,294)(29,916,309 - 29,917,383)
sequence
gaattcttcggacaggcaaatcaccgcttttgcttaaaatcgtaattctg
ctgaagccactgttgattttgactggctgtctctttgcttgttatcttcc
tattatatactcccattctttttccttgcctctctctgattgagatgtct
ctccttacatgtacttatttatacaggaaagcagtggtaataatcttcca
tgtatctgctaatgctttaaacatatagtaggcacatacagtgttcctgg
atacttatcaatgtagcctgtcttccttaagcaacatcctcattgacaca
gcataatgtcagttcggaaaagaacacggcctaggaggaaggctggaaac
tcagcaagcgagaacatagtatatgtgtctctgtgggtaattactactgg
gttctcagaccgtacagctctggattatattttgcctctgttttccatta
ttacttgaaaaggctagcaaatacctagaggatcgtgtaaaatgagttcc
ataactgcttggcaactaggaaatgttcaacagcttcgcagctgatctgc
tgtaacaagaagggttaaggttaaatctaagccatccagagaacccaact
cccatttaaacatcacacacacacacacacacacacacacacacacacac
acacacacacacagcatctcacctcccacttcccctgctgggtcctcttc
ttcaggtgaatgttccagtgctctgaactgacgtctgcacagtgagggat
ggtcagcgcaaagggagttgtgacaagcatatctggaggcccacaggtga
cttcaggactcaggagaacctcagatccatctgactgcaggcttcagaga
tgagaaaagagatgaccgagaagcatgaaaacgatgagggacatcaggtg
agaacttacttacagatggggatagtctacaagcacgtgccatcctttgt
ggaatgacttggagaacttaactgtaaactacccagtcaccaggttgact
tatggtcagattttaactagtttcatcagccaaaaatttgacaaccagac
tttttggaattaggagagattaagaacctaaaaatgcatcgcagagcacc
ccagcttatcaaatgatcattctctcattaaccatttgtcctgtccattg
aaaaaaatccca

gaattcagagtggcagacatttgttttctcagaataaattatatttttat
gtgtttagttttattaaggttaaaataatgacttttattataagttttta
tatacatatttaatgtatttgggtcttacctaggcatggtggtgtttggc
taaggtggtaagatggcattcaagctatcccagccagagagaccttgtct
cagaaatcaattcagtatattttcattttctaaattttataatgggcatg
ctccctttgtatatttaaataatatttaatatatttcctgtgagtcttta
taaaattaacaaagtaaagatagtgatttctatcaatgataaaagatcaa
tttggagttttagggagttggtcagtcatggacacagacacagacaaaca
cagatatagacacaggcacacacacacacatacttttattaaccatcaat
tcattattcataacagacaagaaccagaacaattacataatataggaggt
acaatatctcctaggccttgaacttcttataccctgggcagttataatct
gccccactccctgctatagaataaatgtattaactcctttcggtagtcat
gtacccacagaataaaactcaggattaccatatgatcaaaagtactcttt
attttccagatttatgaagtggaggagcttaaatttagagtctatagttt
gattttttttcagcatgtcataagctgtcctgagcaactctctcagagca
ggagcccctggtgttaagaatcaccggcttctcccattatcagaggcata
ctgtgaggaaggcagccagagaagatactggagttgaaggttaggactgc
tctgattctaataattatgtcttctgaaagctaacgtcctgaaaacccaa
agaggttttttatgtttctgatcttaactatttgtcatttgaatttctat
ctgctttaagttctatttaatagactgtaaattttaaatatgtctagata
tatctaataaaaaagaaaaagaagtgctctctataaagtacattcttttt
ggcaaattctttcctctccttgctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_29806130_29807294
seq2: B6Ng01-209J20.b_50_1211

seq1  GAATTCTTCGGACAGGCAAATCACCGCTTTTGCTTAAAATCGTAATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGACAGGCAAATCACCGCTTTTGCTTAAAATCGTAATTCTG  50

seq1  CTGAAGCCACTGTTGATTTTGACTGGCTGTCTCTTTGCTTGTTATCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCACTGTTGATTTTGACTGGCTGTCTCTTTGCTTGTTATCTTCC  100

seq1  TATTATATACTCCCATTCTTTTTCCTTGCCTCTCTCTGATTGAGATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATACTCCCATTCTTTTTCCTTGCCTCTCTCTGATTGAGATGTCT  150

seq1  CTCCTTACATGTACTTATTTATACAGGAAAGCAGTGGTAATAATCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACATGTACTTATTTATACAGGAAAGCAGTGGTAATAATCTTCCA  200

seq1  TGTATCTGCTAATGCTTTAAACATATAGTAGGCACATACAGTGTTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGCTAATGCTTTAAACATATAGTAGGCACATACAGTGTTCCTGG  250

seq1  ATACTTATCAATGTAGCCTGTCTTCCTTAAGCAACATCCTCATTGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATCAATGTAGCCTGTCTTCCTTAAGCAACATCCTCATTGACACA  300

seq1  GCATAATGTCAGTTCGGAAAAGAACACGGCCTAGGAGGAAGGCTGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATGTCAGTTCGGAAAAGAACACGGCCTAGGAGGAAGGCTGGAAAC  350

seq1  TCAGCAAGCGAGAACATAGTATATGTGTCTCTGTGGGTAATTACTACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGCGAGAACATAGTATATGTGTCTCTGTGGGTAATTACTACTGG  400

seq1  GTTCTCAGACCGTACAGCTCTGGATTATATTTTGCCTCTGTTTTCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGACCGTACAGCTCTGGATTATATTTTGCCTCTGTTTTCCATTA  450

seq1  TTACTTGAAAAGGCTAGCAAATACCTAGAGGATCGTGTAAAATGAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAAAAGGCTAGCAAATACCTAGAGGATCGTGTAAAATGAGTTCC  500

seq1  ATAACTGCTTGGCAACTAGGAAATGTTCAACAGCTTCGCAGCTGATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTTGGCAACTAGGAAATGTTCAACAGCTTCGCAGCTGATCTGC  550

seq1  TGTAACAAGAAGGGTTAAGGTTAAATCTAAGCCATCCAGAGAACCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAGAAGGGTTAAGGTTAAATCTAAGCCATCCAGAGAACCCAACT  600

seq1  CCCATTTAAACATCACACACACACACACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAAACATCACACACACACACACACACACACACACACACACACAC  650

seq1  ACACACACACACAGCATCTCACCTCCCACTTCCCCTGCTGGGTCCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGCATCTCACCTCCCACTTCCCCTGCTGGGTCCTCTTC  700

seq1  TTCAGGTGAATGTTCCAGTGCTCTGAACTGACGTCTGCACAGTGAGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGAATGTTCCAGTGCTCTGAACTGACGTCTGCACAGTGAGGGAT  750

seq1  GGTCAGCGCAAAGGGAGTTGTGACAAGCATATCTGGAGGCCCACAGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCGCAAAGGGAGTTGTGACAAGCATATCTGGAGGCCCACAGGTGA  800

seq1  CTTCAGGACTCAGGAGAACCTCAGATCCATCTGACTGCAGGCTTCAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGACTCAGGAGAACCTCAGATCCATCTGACTGCAGGCTTCAGAGA  850

seq1  TGAGAAAAGAGATGACCGAGAAGCATGAAAACGATGAGGGACATCAGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGAGATGACCGAGAAGCATGAAAACGATGAGGGACATCAGGTG  900

seq1  AGAACTTACTTACAGATGGGGATAGTCTACAAGCACGGTGCCATCCCTTT  950
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AGAACTTACTTACAGATGGGGATAGTCTACAAGCAC-GTGCCAT-CCTTT  948

seq1  GTGGAATGACTTGGAGAACTTAACTGTAAACTACCCAGTCACCAAGGTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGGAATGACTTGGAGAACTTAACTGTAAACTACCCAGTCACC-AGGTTG  997

seq1  ACTTATGGTCAGATTTTAACTAGTTTCATCAGC--AAAAATTGACAACCA  1048
      |||||||||||||||||||||||||||||||||  |||| ||||||||||
seq2  ACTTATGGTCAGATTTTAACTAGTTTCATCAGCCAAAAATTTGACAACCA  1047

seq1  GACTTTTGGAAATAAGGAGAGAATTAAAGAACCCTAAAATGCATCCGCAG  1098
      ||||||| | ||| ||||||||  | |||||||  ||||||||| |||||
seq2  GACTTTTTGGAATTAGGAGAGA--TTAAGAACCTAAAAATGCAT-CGCAG  1094

seq1  AGCCAACCCCAGC-TATCAAATGATCAT--TCTCATTAAC--ATTGTCCT  1143
      |||  |||||||| ||||||||||||||  ||||||||||   |||||||
seq2  AGC--ACCCCAGCTTATCAAATGATCATTCTCTCATTAACCATTTGTCCT  1142

seq1  GTCAATGGAAAAAAAAATCCCA  1165
      ||| || |  ||||||||||||
seq2  GTCCATTG--AAAAAAATCCCA  1162


seq1: chr8_29916309_29917383
seq2: B6Ng01-209J20.g_66_1142 (reverse)

seq1  GAAAACAAGAAGAGG-AAGAATTTTCC-AAAAGAATGTACTTTATAGAGA  48
      |||| |||| ||||| |||||||| || ||||||||||||||||||||||
seq2  GAAAGCAAGGAGAGGAAAGAATTTGCCAAAAAGAATGTACTTTATAGAGA  50

seq1  GCACTTC-TTTTCTTTTT--ATAGATATATCTAGACATATTTAAAATTTA  95
      ||||||| ||||||||||   |||||||||||||||||||||||||||||
seq2  GCACTTCTTTTTCTTTTTTATTAGATATATCTAGACATATTTAAAATTTA  100

seq1  CAGTCTATTAAATAGGAACTTTAAAGCAGATAGAAATTCAAATGACAAAA  145
      |||||||||||||| |||| |||||||||||||||||||||||||| |||
seq2  CAGTCTATTAAATA-GAAC-TTAAAGCAGATAGAAATTCAAATGAC-AAA  147

seq1  TAGTTAAGATCAGAAACATAAAAAACCTCTTTGGGTTTTCAGGGACGTTA  195
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGTTAAGATCAGAAACATAAAAAACCTCTTTGGGTTTTCA-GGACGTTA  196

seq1  GCTTTCAGAAGACATAATTATTAGAATCAGAGCAGTCCTAACCTTCAACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGAAGACATAATTATTAGAATCAGAGCAGTCCTAACCTTCAACT  246

seq1  CCAGTATCTTCTCTGGCTGCCTTCCTCACAGTATGCCTCTGATAATGGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCTTCTCTGGCTGCCTTCCTCACAGTATGCCTCTGATAATGGGA  296

seq1  GAAGCCGGTGATTCTTAACACCAGGGGCTCCTGCTCTGAGAGAGTTGCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGGTGATTCTTAACACCAGGGGCTCCTGCTCTGAGAGAGTTGCTC  346

seq1  AGGACAGCTTATGACATGCTG-AAAAAAATCAAACTATAGACTCTAAATT  394
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGACAGCTTATGACATGCTGAAAAAAAATCAAACTATAGACTCTAAATT  396

seq1  TAAGCTCCTCCACTTCATAAATCTGGAAAATAAAGAGTACTTTTGATCAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCCTCCACTTCATAAATCTGGAAAATAAAGAGTACTTTTGATCAT  446

seq1  ATGGTAATCCTGAGTTTTATTCTGTGGGTACATGACTACCGAAAGGAGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATCCTGAGTTTTATTCTGTGGGTACATGACTACCGAAAGGAGTT  496

seq1  AATACATTTATTCTATAGCAGGGAGTGGGGCAGATTATAACTGCCCAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTATTCTATAGCAGGGAGTGGGGCAGATTATAACTGCCCAGGG  546

seq1  TATAAGAAGTTCAAGGCCTAGGAGATATTGTACCTCCTATATTATGTAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAGTTCAAGGCCTAGGAGATATTGTACCTCCTATATTATGTAAT  596

seq1  TGTTCTGGTTCTTGTCTGTTATGAATAATGAATTGATGGTTAATAAAAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGTTCTTGTCTGTTATGAATAATGAATTGATGGTTAATAAAAGT  646

seq1  ATGTGTGTGTGTGTGCCTGTGTCTATATCTGTGTTTGTCTGTGTCTGTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGCCTGTGTCTATATCTGTGTTTGTCTGTGTCTGTGT  696

seq1  CCATGACTGACCAACTCCCTAAAACTCCAAATTGATCTTTTATCATTGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTGACCAACTCCCTAAAACTCCAAATTGATCTTTTATCATTGAT  746

seq1  AGAAATCACTATCTTTACTTTGTTAATTTTATAAAGACTCACAGGAAATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTATCTTTACTTTGTTAATTTTATAAAGACTCACAGGAAATA  796

seq1  TATTAAATATTATTTAAATATACAAAGGGAGCATGCCCATTATAAAATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATATTATTTAAATATACAAAGGGAGCATGCCCATTATAAAATTT  846

seq1  AGAAAATGAAAATATACTGAATTGATTTCTGAGACAAGGTCTCTCTGGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAAATATACTGAATTGATTTCTGAGACAAGGTCTCTCTGGCT  896

seq1  GGGATAGCTTGAATGCCATCTTACCACCTTAGCCAAACACCACCATGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCTTGAATGCCATCTTACCACCTTAGCCAAACACCACCATGCCT  946

seq1  AGGTAAGACCCAAATACATTAAATATGTATATAAAAACTTATAATAAAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGACCCAAATACATTAAATATGTATATAAAAACTTATAATAAAAG  996

seq1  TCATTATTTTAACCTTAATAAAACTAAACACATAAAAATATAATTTATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTTAACCTTAATAAAACTAAACACATAAAAATATAATTTATTC  1046

seq1  TGAGAAAACAAATGTCTGCCACTCTGAATTC  1075
      |||||||||||||||||||||||||||||||
seq2  TGAGAAAACAAATGTCTGCCACTCTGAATTC  1077


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