BAC Information

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BAC

Clone NameB6Ng01-209L16
Chromosome8 (Build37)
Map Location 109,888,109 - 110,009,365
singlet/doubletdoublet
Overlap geneNfat5, Nqo1, Nob1, Wwp2, LOC100042812
Upstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
Downstream genePsmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209L16.bB6Ng01-209L16.g
ACCGA028272GA028273
length1,088964
definitionB6Ng01-209L16.b B6Ng01-209L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,008,254 - 110,009,365)(109,888,109 - 109,889,072)
sequence
gaattccctctgtattttaggagttacccaccatgatgggacagggacaa
cttggcagctgtagcctctggtacaaagaatagggattatcatctgagat
cacacagttggaactcaaatttgggaaacagtgcctcttctccaagacat
cccagatgctaacacacagtcctgccttatccatcatgaacttcagcctc
tctaaggtgggggccaagtgagtgcatgaaatgagaaaattttcacaatg
caaacagagcttgtaaagccaaagtagatcaagtcactctttatctaaaa
ggccctgcaaacagctaggtaaggctaagacaagatatcacagtaaggca
gtttgggtgacagtgagatcaaggcccatctgagctatacaataagatct
tatctcaagaaaaaattatgcagatatggaactggcaggataattcagtg
gttaaaagcaattgctgtttacagaggacaaaagttctgatcccagcacc
caaatgaagtaagtggctcacaaccatctgtaatccaagctccagagttc
ttccttctggacgctggggacacccacatatacaccatatacacacatac
acaccacaaaataattaaagtaaatctttaaaaattatgtatatttgtat
aacataaaggcagaagtgaaagtctgaaaaccaagagaactaactagaaa
aataataaggagaaggtgaaggagcccaggtagaacatgcacacagtaca
tcagacatgcttatacgatggcctatgtaaccagtgctgtaaacacacac
aaagatggtgctgccacagttacagcactcagcgccaagcctgacaacct
ggatccaatccccagatccctcagagacagtcaattcccaaagttgtcct
ctgacctccacacatttgccacacacaataaaagttttatgaaataacaa
aagttttaaagaaagaggacagccagggctgttacacagagaaactctgt
ctttaaaaacaacaaccactataaaaaaaaaacacaaagtactctatcac
aagctgtacagggccttttcttgtgagacttatttatt
gaattccagaactacatagaccctgtctcagaaagggaggtggtagggga
gaatgaaaaaagaaatcagtaataaaggaaataggaaaatcttcacatta
aagttttgagcctggtggtggtgatggcacgtggctttaatcccagcact
cagaaaacagagaaaagacaaagttttgagctgaggatgtggcttacagt
aagcaaagtgcttgctaacagactgaggtcctgggttggctctccagcat
tgcataaaccaggtgtggtgttgcacacctgtaatccgagtgcttgaaaa
gtaaaggcaggagtatccgaagttcaaggttatctttggctttaagttta
agccaccctgggaaacatgagagtctatctcaaagaagagtgcaggtggc
tggagagatggcttagtgattaagagcacttgctgctcctgcagaagatc
caggttccattccaccacctcatggcagctcacagccatctgttccaggg
gagccaatgccctctcttgacctttatggttgcatggtgcacatacctgc
tagcaggcagaacactcatatgtttaaagtaaaaagaaataaatatttgt
taaagagagcataggtatcaaaaggaaatttagaaataaactgaataaag
ataaaaaataatggctttgaaagtttgtgagatactaggcatagtggcat
gtgaactgtaatgctagcaccctggagaaaggaagagaaatgtttgagac
cagcatgagctgtataatagcaaaaccccatctgtggttctttctgtagt
ctcaaagtaataagaatttgagtctcaaacttgtacatcaggcgttagct
gcatgatcaattcacagactgtcactagctggaacagtagactccataaa
gtaccatggcaaactcgaggaaaggttgcaaaggagaaaggaaatgagtg
aaagggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110008254_110009365
seq2: B6Ng01-209L16.b_48_1135 (reverse)

seq1  AATAAATAAGTCTCACCAAAGAAAAGGGCCCTGTACCAGGCTTTGGTTGG  50
      ||||||||||||||||  ||||||| ||||||||||   ||||  ||  |
seq2  AATAAATAAGTCTCAC--AAGAAAA-GGCCCTGTAC--AGCTT--GT--G  41

seq1  ATTAGAGTACTTTTGGTGTTTTTTTTTTTTTTTTTTTTGGTTGGTTTGTT  100
      | |||||||||||  |||     |||||||||| |  ||||||      |
seq2  A-TAGAGTACTTT--GTG-----TTTTTTTTTTATAGTGGTTG------T  77

seq1  TGTTTTTTAAAGACAGAGTTTCTCTGTGTAACAGCCCTGGCTGTCCTCTT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTTAAAGACAGAGTTTCTCTGTGTAACAGCCCTGGCTGTCCTCTT  126

seq1  TCTTTAAAACTTTTGTTATTTCATAAAACTTTTATTGTGTGTGGCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAACTTTTGTTATTTCATAAAACTTTTATTGTGTGTGGCAAATG  176

seq1  TGTGGAGGTCAGAGGACAACTTTGGGAATTGACTGTCTCTGAGGGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTCAGAGGACAACTTTGGGAATTGACTGTCTCTGAGGGATCTG  226

seq1  GGGATTGGATCCAGGTTGTCAGGCTTGGCGCTGAGTGCTGTAACTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGATCCAGGTTGTCAGGCTTGGCGCTGAGTGCTGTAACTGTGGC  276

seq1  AGCACCATCTTTGTGTGTGTTTACAGCACTGGTTACATAGGCCATCGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATCTTTGTGTGTGTTTACAGCACTGGTTACATAGGCCATCGTAT  326

seq1  AAGCATGTCTGATGTACTGTGTGCATGTTCTACCTGGGCTCCTTCACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTCTGATGTACTGTGTGCATGTTCTACCTGGGCTCCTTCACCTT  376

seq1  CTCCTTATTATTTTTCTAGTTAGTTCTCTTGGTTTTCAGACTTTCACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTATTTTTCTAGTTAGTTCTCTTGGTTTTCAGACTTTCACTTC  426

seq1  TGCCTTTATGTTATACAAATATACATAATTTTTAAAGATTTACTTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTATGTTATACAAATATACATAATTTTTAAAGATTTACTTTAATT  476

seq1  ATTTTGTGGTGTGTATGTGTGTATATGGTGTATATGTGGGTGTCCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGGTGTGTATGTGTGTATATGGTGTATATGTGGGTGTCCCCAGC  526

seq1  GTCCAGAAGGAAGAACTCTGGAGCTTGGATTACAGATGGTTGTGAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAAGGAAGAACTCTGGAGCTTGGATTACAGATGGTTGTGAGCCAC  576

seq1  TTACTTCATTTGGGTGCTGGGATCAGAACTTTTGTCCTCTGTAAACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATTTGGGTGCTGGGATCAGAACTTTTGTCCTCTGTAAACAGCA  626

seq1  ATTGCTTTTAACCACTGAATTATCCTGCCAGTTCCATATCTGCATAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTAACCACTGAATTATCCTGCCAGTTCCATATCTGCATAATTT  676

seq1  TTTCTTGAGATAAGATCTTATTGTATAGCTCAGATGGGCCTTGATCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAGATAAGATCTTATTGTATAGCTCAGATGGGCCTTGATCTCAC  726

seq1  TGTCACCCAAACTGCCTTACTGTGATATCTTGTCTTAGCCTTACCTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCAAACTGCCTTACTGTGATATCTTGTCTTAGCCTTACCTAGCT  776

seq1  GTTTGCAGGGCCTTTTAGATAAAGAGTGACTTGATCTACTTTGGCTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGGGCCTTTTAGATAAAGAGTGACTTGATCTACTTTGGCTTTAC  826

seq1  AAGCTCTGTTTGCATTGTGAAAATTTTCTCATTTCATGCACTCACTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGTTTGCATTGTGAAAATTTTCTCATTTCATGCACTCACTTGGC  876

seq1  CCCCACCTTAGAGAGGCTGAAGTTCATGATGGATAAGGCAGGACTGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTTAGAGAGGCTGAAGTTCATGATGGATAAGGCAGGACTGTGTG  926

seq1  TTAGCATCTGGGATGTCTTGGAGAAGAGGCACTGTTTCCCAAATTTGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCTGGGATGTCTTGGAGAAGAGGCACTGTTTCCCAAATTTGAGT  976

seq1  TCCAACTGTGTGATCTCAGATGATAATCCCTATTCTTTGTACCAGAGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGTGTGATCTCAGATGATAATCCCTATTCTTTGTACCAGAGGCT  1026

seq1  ACAGCTGCCAAGTTGTCCCTGTCCCATCATGGTGGGTAACTCCTAAAATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCCAAGTTGTCCCTGTCCCATCATGGTGGGTAACTCCTAAAATA  1076

seq1  CAGAGGGAATTC  1112
      ||||||||||||
seq2  CAGAGGGAATTC  1088

seq1: chr8_109888109_109889072
seq2: B6Ng01-209L16.g_68_1031

seq1  GAATTCCAGAACTACATAGACCCTGTCTCAGAAAGGGAGGTGGTAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTACATAGACCCTGTCTCAGAAAGGGAGGTGGTAGGGGA  50

seq1  GAATGAAAAAAGAAATCAGTAATAAAGGAAATAGGAAAATCTTCACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAAAAGAAATCAGTAATAAAGGAAATAGGAAAATCTTCACATTA  100

seq1  AAGTTTTGAGCCTGGTGGTGGTGATGGCACGTGGCTTTAATCCCAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGAGCCTGGTGGTGGTGATGGCACGTGGCTTTAATCCCAGCACT  150

seq1  CAGAAAACAGAGAAAAGACAAAGTTTTGAGCTGAGGATGTGGCTTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAGAGAAAAGACAAAGTTTTGAGCTGAGGATGTGGCTTACAGT  200

seq1  AAGCAAAGTGCTTGCTAACAGACTGAGGTCCTGGGTTGGCTCTCCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTGCTTGCTAACAGACTGAGGTCCTGGGTTGGCTCTCCAGCAT  250

seq1  TGCATAAACCAGGTGTGGTGTTGCACACCTGTAATCCGAGTGCTTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAACCAGGTGTGGTGTTGCACACCTGTAATCCGAGTGCTTGAAAA  300

seq1  GTAAAGGCAGGAGTATCCGAAGTTCAAGGTTATCTTTGGCTTTAAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCAGGAGTATCCGAAGTTCAAGGTTATCTTTGGCTTTAAGTTTA  350

seq1  AGCCACCCTGGGAAACATGAGAGTCTATCTCAAAGAAGAGTGCAGGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCTGGGAAACATGAGAGTCTATCTCAAAGAAGAGTGCAGGTGGC  400

seq1  TGGAGAGATGGCTTAGTGATTAAGAGCACTTGCTGCTCCTGCAGAAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTTAGTGATTAAGAGCACTTGCTGCTCCTGCAGAAGATC  450

seq1  CAGGTTCCATTCCACCACCTCATGGCAGCTCACAGCCATCTGTTCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCATTCCACCACCTCATGGCAGCTCACAGCCATCTGTTCCAGGG  500

seq1  GAGCCAATGCCCTCTCTTGACCTTTATGGTTGCATGGTGCACATACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATGCCCTCTCTTGACCTTTATGGTTGCATGGTGCACATACCTGC  550

seq1  TAGCAGGCAGAACACTCATATGTTTAAAGTAAAAAGAAATAAATATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCAGAACACTCATATGTTTAAAGTAAAAAGAAATAAATATTTGT  600

seq1  TAAAGAGAGCATAGGTATCAAAAGGAAATTTAGAAATAAACTGAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGCATAGGTATCAAAAGGAAATTTAGAAATAAACTGAATAAAG  650

seq1  ATAAAAAATAATGGCTTTGAAAGTTTGTGAGATACTAGGCATAGTGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAATGGCTTTGAAAGTTTGTGAGATACTAGGCATAGTGGCAT  700

seq1  GTGAACTGTAATGCTAGCACCCTGGAGAAAGGAAGAGAAATGTTTGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGTAATGCTAGCACCCTGGAGAAAGGAAGAGAAATGTTTGAGAC  750

seq1  CAGCATGAGCTGTATAATAGCAAAACCCCATCTGTGGTTCTTTCTGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAGCTGTATAATAGCAAAACCCCATCTGTGGTTCTTTCTGTAGT  800

seq1  CTCAAAGTAATAAGAATTTGAGTCTCAAACTTGTACATCAGGCGTTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTAATAAGAATTTGAGTCTCAAACTTGTACATCAGGCGTTAGCT  850

seq1  GCATGATCAATTCACAGACTGTCACTAGCTGGAACAGTAGACTCCATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATCAATTCACAGACTGTCACTAGCTGGAACAGTAGACTCCATAAA  900

seq1  GTACCAATGGCAAACTCGAGGAAAAGTTGCAAAGGAGAAAGGAAATGAGT  950
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  GTACC-ATGGCAAACTCGAGGAAAGGTTGCAAAGGAGAAAGGAAATGAGT  949

seq1  GAAA-GGGGGGTGGG  964
      |||| ||||||||||
seq2  GAAAGGGGGGGTGGG  964