BAC Information

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BAC

Clone NameB6Ng01-210D09
Chromosome8 (Build37)
Map Location 108,741,919 - 108,909,453
singlet/doubletdoublet
Overlap genePrmt7, Smpd3
Upstream geneD230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210D09.bB6Ng01-210D09.g
ACCGA028611GA028612
length1,1601,116
definitionB6Ng01-210D09.b B6Ng01-210D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,908,302 - 108,909,453)(108,741,919 - 108,743,036)
sequence
gaattctggtaggatgccatcaagcggtggtcttagccccacatgcgttg
acaggagctagataaggaaagagataaatggtggctgactatgtctgagg
atgacagagacccatgagggaaaggagaagggagcgacaggtgactggag
gatgatggtcaggattctcagatctacccagaaggagtgacaagttgtat
ttatcatgtcccaacacgcctaagggaagtgtggagaactgggagcagtg
cccagaggcaggcactaggtgagaaagactactgtgtcttaacagcaaca
cgtgcacctggtgcccacggatgaatcacttagagaagtgcacataccaa
attgcccgaggctgggtggtttataaaggaaagaggtttattttacacag
ttctgaagttcaaaagagtggtgctggctatctggtaaaggcatcctggt
ggaagaaaagcatgtattcagagagtgaagggaggctccgggttcccttc
attacaacctagactcataagaactaacccactcctgttgtaattaatct
attctcttgagaaagacattcatgcattcatatgggtggtggcccgtgac
ctaattattcagtaattagttacactgaggacctcagcctcgacatgaac
ctgtgttgggacaaattccaactgtaggggtggcccaggaacaacaggca
ttgggaactgtggttgtggtaatatcccagaatagaatttcttaagcaca
tgggcctctctagaatccataagttgaaagatctccagagtcattatgtc
agagctgagggtgcccagggctacagatcctaaccccacccctgtgtatc
catctccttcctttctggacagggaaattatctcagtagttacaatggct
ttatggccacagtatcagaagtgtttggacatggaagggtttcttttatt
gcaacctaagtgacccagaaaaaaagagagttccccattccctactttgg
ttctggtggaccattatttataatcccagcacttgagcctgaagcagact
gcaagtttgaagcccagcctggcctactagtagttccagacatgtctgta
cttatgtaaagagaacttgtttcgagccttagcactactgtctcctgaga
gactctcacc
gaattcatatacatctgcctctgcctcttggatgctgaattaaactcatg
ccccaccaaccctagcacttttattttatttttattagtgtgtatgttgt
ctgtgcggatatatattatgtgcaggtgattttggaggacagaagagggt
gttgtatctctggggctggaggtgtgtgtgttgtaactgcccagtgtggg
atcagcaagcactcttaactgctaggccatatctctagtcttaaaaggac
attcttgagcaccttagtatatagactatactaaaggacctgctaatctg
agtgtgtttgctgagctaactgggaaaaagcagtcttggtttttgactag
acaagtaacgtggcatgctcatctttttattgtaatattgtgtttgaaat
tttctgattttagtggaatccacataaagaaggtcttcttactttagaag
gaagttggccacatgacattctgtacagtcagccaagccagaaatagagc
tctcccttttttgtgagcctgaagtctcattgaatatattggtcttccga
ctgcaaattgttgctcaacttgcattggggtacatgacagcccaaaagtc
agtctgtgagctgccatgtgaacactcacaattgaatcaggtctcatcaa
aggtgacaagagctcttaactgatgagctatggttctagcccctagtaag
tgtatgcttgacactttaagaattattggaaccttttttagggtggatgt
gtcatcttacgttttcattactgatgtatgaggtttctagtttcttcaca
tttatcaacatttgttattttagagactggtatatatcttagtagagtac
ttgtctagcatacatgaggccctgagtgatacccagcattagaaaaaaaa
aaaaaaaaagaaatcaacattgtagtgtttaaacttagaaacactcagcc
aacagccagccaacaacaaaaacccaaccccaaaccaaaaggccttttta
ttaagtgggttgcagatggcctatcaagttaagctgctgctcaactggac
aacgttcagtttctgtccctgacttcgtggtcgggaggtacttgtactcc
tacaattggtcttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108908302_108909453
seq2: B6Ng01-210D09.b_44_1203 (reverse)

seq1  GGTG-GAGTCTCTCAGAGGACAGTTGTGCT-AGGCTCCGAAACA--GTCT  46
      |||| |||||||||||  |||||| ||||| ||||| |||||||   |||
seq2  GGTGAGAGTCTCTCAGGAGACAGTAGTGCTAAGGCT-CGAAACAAGTTCT  49

seq1  CTCTACAT-AGTTCAGAC-TGTCCTGGAACTTACTATGTAGCCCAGGCT-  93
      || ||||| ||| ||||| ||| ||||||| ||||| |||| ||||||| 
seq2  CTTTACATAAGTACAGACATGT-CTGGAAC-TACTA-GTAGGCCAGGCTG  96

seq1  GGCCTCAAACTTGCAGTCCTGCTTCAGCCTCCAAGTGCTGGGATTATAAA  143
      ||| ||||||||||||| ||||||||| || |||||||||||||||||||
seq2  GGCTTCAAACTTGCAGT-CTGCTTCAGGCT-CAAGTGCTGGGATTATAAA  144

seq1  T-ATGGTCCACCAGA--CCAAGTAGGGAATGGGGACTCCTCTTTTTTTCT  190
      | |||||||||||||  | ||||||||||||||||   ||||||||||||
seq2  TAATGGTCCACCAGAACCAAAGTAGGGAATGGGGAACTCTCTTTTTTTCT  194

seq1  GGGTCACCTAGGTTGCA--TAAAGAAACCC-TCCATGTCCAAACACTTCT  237
      ||||||| |||||||||   |||||||||| |||||||||||||||||||
seq2  GGGTCACTTAGGTTGCAATAAAAGAAACCCTTCCATGTCCAAACACTTCT  244

seq1  GATACTGTGGCCATAAAGCCATTGTAACTACTGAGATAA-TTCCCTGTCC  286
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATACTGTGGCCATAAAGCCATTGTAACTACTGAGATAATTTCCCTGTCC  294

seq1  AGAAAGGAAGGAGATGGATACACAGGGGTGGGGTTAGGATCTGTAGCCCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGGAGATGGATACACAGGGGTGGGGTTAGGATCTGTAGCCCT  344

seq1  GGGCACCCTCAGCTCTGACATAATGACTCTGGAGATCTTTCAACTTATGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCCTCAGCTCTGACATAATGACTCTGGAGATCTTTCAACTTATGG  394

seq1  ATTCTAGAGAGGCCCATGTGCTTAAGAAATTCTATTCTGGGATATTACCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGAGAGGCCCATGTGCTTAAGAAATTCTATTCTGGGATATTACCA  444

seq1  CAACCACAGTTCCCAATGCCTGTTGTTCCTGGGCCACCCCTACAGTTGGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAGTTCCCAATGCCTGTTGTTCCTGGGCCACCCCTACAGTTGGA  494

seq1  ATTTGTCCCAACACAGGTTCATGTCGAGGCTGAGGTCCTCAGTGTAACTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCCAACACAGGTTCATGTCGAGGCTGAGGTCCTCAGTGTAACTA  544

seq1  ATTACTGAATAATTAGGTCACGGGCCACCACCCATATGAATGCATGAATG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAATAATTAGGTCACGGGCCACCACCCATATGAATGCATGAATG  594

seq1  TCTTTCTCAAGAGAATAGATTAATTACAACAGGAGTGGGTTAGTTCTTAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAAGAGAATAGATTAATTACAACAGGAGTGGGTTAGTTCTTAT  644

seq1  GAGTCTAGGTTGTAATGAAGGGAACCCGGAGCCTCCCTTCACTCTCTGAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAGGTTGTAATGAAGGGAACCCGGAGCCTCCCTTCACTCTCTGAA  694

seq1  TACATGCTTTTCTTCCACCAGGATGCCTTTACCAGATAGCCAGCACCACT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCTTTTCTTCCACCAGGATGCCTTTACCAGATAGCCAGCACCACT  744

seq1  CTTTTGAACTTCAGAACTGTGTAAAATAAACCTCTTTCCTTTATAAACCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAACTTCAGAACTGTGTAAAATAAACCTCTTTCCTTTATAAACCA  794

seq1  CCCAGCCTCGGGCAATTTGGTATGTGCACTTCTCTAAGTGATTCATCCGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTCGGGCAATTTGGTATGTGCACTTCTCTAAGTGATTCATCCGT  844

seq1  GGGCACCAGGTGCACGTGTTGCTGTTAAGACACAGTAGTCTTTCTCACCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCAGGTGCACGTGTTGCTGTTAAGACACAGTAGTCTTTCTCACCT  894

seq1  AGTGCCTGCCTCTGGGCACTGCTCCCAGTTCTCCACACTTCCCTTAGGCG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGCCTCTGGGCACTGCTCCCAGTTCTCCACACTTCCCTTAGGCG  944

seq1  TGTTGGGACATGATAAATACAACTTGTCACTCCTTCTGGGTAGATCTGAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGACATGATAAATACAACTTGTCACTCCTTCTGGGTAGATCTGAG  994

seq1  AATCCTGACCATCATCCTCCAGTCACCTGTCGCTCCCTTCTCCTTTCCCT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGACCATCATCCTCCAGTCACCTGTCGCTCCCTTCTCCTTTCCCT  1044

seq1  CATGGGTCTCTGTCATCCTCAGACATAGTCAGCCACCATTTATCTCTTTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTCTCTGTCATCCTCAGACATAGTCAGCCACCATTTATCTCTTTC  1094

seq1  CTTATCTAGCTCCTGTCAACGCATGTGGGGCTAAGACCACCGCTTGATGG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAGCTCCTGTCAACGCATGTGGGGCTAAGACCACCGCTTGATGG  1144

seq1  CATCCTACCAGAATTC  1152
      ||||||||||||||||
seq2  CATCCTACCAGAATTC  1160

seq1: chr8_108741919_108743036
seq2: B6Ng01-210D09.g_64_1179

seq1  GAATTCATATACATCTGCCTCTGCCTCTTGGATGCTGAATTAAACTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATACATCTGCCTCTGCCTCTTGGATGCTGAATTAAACTCATG  50

seq1  CCCCACCAACCCTAGCACTTTTATTTTATTTTTATTAGTGTGTATGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCAACCCTAGCACTTTTATTTTATTTTTATTAGTGTGTATGTTGT  100

seq1  CTGTGCGGATATATATTATGTGCAGGTGATTTTGGAGGACAGAAGAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGGATATATATTATGTGCAGGTGATTTTGGAGGACAGAAGAGGGT  150

seq1  GTTGTATCTCTGGGGCTGGAGGTGTGTGTGTTGTAACTGCCCAGTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCTCTGGGGCTGGAGGTGTGTGTGTTGTAACTGCCCAGTGTGGG  200

seq1  ATCAGCAAGCACTCTTAACTGCTAGGCCATATCTCTAGTCTTAAAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAGCACTCTTAACTGCTAGGCCATATCTCTAGTCTTAAAAGGAC  250

seq1  ATTCTTGAGCACCTTAGTATATAGACTATACTAAAGGACCTGCTAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAGCACCTTAGTATATAGACTATACTAAAGGACCTGCTAATCTG  300

seq1  AGTGTGTTTGCTGAGCTAACTGGGAAAAAGCAGTCTTGGTTTTTGACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTGCTGAGCTAACTGGGAAAAAGCAGTCTTGGTTTTTGACTAG  350

seq1  ACAAGTAACGTGGCATGCTCATCTTTTTATTGTAATATTGTGTTTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAACGTGGCATGCTCATCTTTTTATTGTAATATTGTGTTTGAAAT  400

seq1  TTTCTGATTTTAGTGGAATCCACATAAAGAAGGTCTTCTTACTTTAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTTTAGTGGAATCCACATAAAGAAGGTCTTCTTACTTTAGAAG  450

seq1  GAAGTTGGCCACATGACATTCTGTACAGTCAGCCAAGCCAGAAATAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGCCACATGACATTCTGTACAGTCAGCCAAGCCAGAAATAGAGC  500

seq1  TCTCCCTTTTTTGTGAGCCTGAAGTCTCATTGAATATATTGGTCTTCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTTTTTGTGAGCCTGAAGTCTCATTGAATATATTGGTCTTCCGA  550

seq1  CTGCAAATTGTTGCTCAACTTGCATTGGGGTACATGACAGCCCAAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTGTTGCTCAACTTGCATTGGGGTACATGACAGCCCAAAAGTC  600

seq1  AGTCTGTGAGCTGCCATGTGAACACTCACAATTGAATCAGGTCTCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGAGCTGCCATGTGAACACTCACAATTGAATCAGGTCTCATCAA  650

seq1  AGGTGACAAGAGCTCTTAACTGATGAGCTATGGTTCTAGCCCCTAGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAAGAGCTCTTAACTGATGAGCTATGGTTCTAGCCCCTAGTAAG  700

seq1  TGTATGCTTGACACTTTAAGAATTATTGGAACCTTTTTTAGGGTGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTTGACACTTTAAGAATTATTGGAACCTTTTTTAGGGTGGATGT  750

seq1  GTCATCTTACGTTTTCATTACTGATGTATGAGGTTTCTAGTTTCTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTACGTTTTCATTACTGATGTATGAGGTTTCTAGTTTCTTCACA  800

seq1  TTTATCAACATTTGTTATTTTAGAGACTGGTATATATCTTAGTAGAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAACATTTGTTATTTTAGAGACTGGTATATATCTTAGTAGAGTAC  850

seq1  TTGTCTAGCATACATGAGGCCCTGAGTGATACCCAGCATTAGAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGCATACATGAGGCCCTGAGTGATACCCAGCATTAGAAAAAAAA  900

seq1  AAAAAAAAAGAAATCAACA-TGTAGTGTTTAAACTTAGAAACACTCAGCC  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAATCAACATTGTAGTGTTTAAACTTAGAAACACTCAGCC  950

seq1  AACAG-CAG-CAACAACAAAAACCCAACCCCAAACCAAAAGCCCTTTTTA  997
      ||||| ||| ||||||||||||||||||||||||||||||| ||||||||
seq2  AACAGCCAGCCAACAACAAAAACCCAACCCCAAACCAAAAGGCCTTTTTA  1000

seq1  -TAAGTGGGTTGGCAGGATGGCTTATCAGGTAAGGCTGCTTGCCTCAAAC  1046
       |||||||||| ||| |||||| ||||| || | ||||||   ||| |||
seq2  TTAAGTGGGTT-GCA-GATGGCCTATCAAGTTAAGCTGCT--GCTC-AAC  1045

seq1  CTGACAACG-TCAG-TTCTGTCCCCCGAACCTCCGTGGTCGGGGAGGGAA  1094
        ||||||| |||| |||||| ||| ||  || ||||||| |||||| | 
seq2  TGGACAACGTTCAGTTTCTGT-CCCTGA--CTTCGTGGTC-GGGAGGTAC  1091

seq1  CTG-ACTCCTACAATTTGTCTTGTG  1118
       || |||||||||||| ||||||||
seq2  TTGTACTCCTACAATTGGTCTTGTG  1116