BAC Information

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BAC

Clone NameB6Ng01-210H13
Chromosome8 (Build37)
Map Location 79,230,441 - 79,397,079
singlet/doubletdoublet
Overlap geneLOC100039211, LOC384847
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210H13.bB6Ng01-210H13.g
ACCGA028801GA028802
length2261,117
definitionB6Ng01-210H13.b B6Ng01-210H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,396,854 - 79,397,079)(79,230,441 - 79,231,558)
sequence
tagagataattaaaaaaaaaagaattctagagatagaatttaaacttgaa
tgtttgtgttgcaaaccctttacacattccagccttaaagtcactcttct
aattctcctgtctgcactttcatgtgtctctcctgtactaatgtgggcag
tatctctaacaactttacttaaattgggcagttcagagagactgtggggg
agagggaggggcatggtggtgagggg

gaattcaaattgctccagcacagatgattacaggagaaactgacaaactt
taattcaaggaaatcaaagattccggtaactgaaaagagtagcagacctc
tctgacctttctaaggaaccaagtaagttgacctcttccattgaagcttt
gagtagatatagaggagtctctatataatatctgaagaccctcttcccta
cagttttctgagattttttttcattcaaatgtgcaaattgttgatgattg
taaaaaaaatatattaactatgtataaattgtataatttagaagtcccta
gacctccaaattgtgagtgcagcatttaatggtgggattcacattaaaat
ccaatgtacaatgatgaaaatcatgtcccctaacacaaaagtgcacatgt
atgcacacacacacacacacacagagagagagagagagagagtttatgaa
cagaactcagatttgtttgttctggtttgtgcatcacacacatcccccat
gagtacacacttttagggaggctggtccactgattctggattaattggtt
aacttaacaaacggtattagaatctgggtatttttcaggattaacatgat
ccccaaggtcatgatcactgttggcacagctactgagaaatttttttcgg
ttaaattacagcttagtagtatcttgagacataaaaacacctaacctccc
caaaaactaaatagagaaatgtttaggctaggttaggccctaagcatttc
attgcaatgtagatcttactaaactgggtctatggagctatattcactat
gattacagaaactatgcctcaaataaaaattaataataaaaatttggggc
tgggcttggtacacattcttttaatctcagcacttgtgagacatagacag
gcagatctccatgagttcaaaggccagcctggtctacacagccagttcca
ggagagccataaaacagagaaacccttgtctcaaaaaaaaaaaaaaaatg
aggaagacggaggaggagggttagagttgtacacattggatggaagataa
aacagctgcatttcttctagatccttgtgtgctagctgaccacatggtaa
atcatattataactacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79396854_79397079
seq2: B6Ng01-210H13.b_51_276 (reverse)

seq1  CCCCTCACCACCATGCCCCTCCCTCTCCCCCACAGTCTCTCTGAACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCACCACCATGCCCCTCCCTCTCCCCCACAGTCTCTCTGAACTGCC  50

seq1  CAATTTAAGTAAAGTTGTTAGAGATACTGCCCACATTAGTACAGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAGTAAAGTTGTTAGAGATACTGCCCACATTAGTACAGGAGAGA  100

seq1  CACATGAAAGTGCAGACAGGAGAATTAGAAGAGTGACTTTAAGGCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAAGTGCAGACAGGAGAATTAGAAGAGTGACTTTAAGGCTGGAA  150

seq1  TGTGTAAAGGGTTTGCAACACAAACATTCAAGTTTAAATTCTATCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAGGGTTTGCAACACAAACATTCAAGTTTAAATTCTATCTCTAG  200

seq1  AATTCTTTTTTTTTTAATTATCTCTA  226
      ||||||||||||||||||||||||||
seq2  AATTCTTTTTTTTTTAATTATCTCTA  226


seq1: chr8_79230441_79231558
seq2: B6Ng01-210H13.g_65_1181

seq1  GAATTCAAATTGCTCCAGCACAGATGATTACAGGAGAAACTGACAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGCTCCAGCACAGATGATTACAGGAGAAACTGACAAACTT  50

seq1  TAATTCAAGGAAATCAAAGATTCCGGTAACTGAAAAGAGTAGCAGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAGGAAATCAAAGATTCCGGTAACTGAAAAGAGTAGCAGACCTC  100

seq1  TCTGACCTTTCTAAGGAACCAAGTAAGTTGACCTCTTCCATTGAAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTTCTAAGGAACCAAGTAAGTTGACCTCTTCCATTGAAGCTTT  150

seq1  GAGTAGATATAGAGGAGTCTCTATATAATATCTGAAGACCCTCTTCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATATAGAGGAGTCTCTATATAATATCTGAAGACCCTCTTCCCTA  200

seq1  CAGTTTTCTGAGATTTTTTTTCATTCAAATGTGCAAATTGTTGATGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTGAGATTTTTTTTCATTCAAATGTGCAAATTGTTGATGATTG  250

seq1  TAAAAAAAATATATTAACTATGTATAAATTGTATAATTTAGAAGTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATATATTAACTATGTATAAATTGTATAATTTAGAAGTCCCTA  300

seq1  GACCTCCAAATTGTGAGTGCAGCATTTAATGGTGGGATTCACATTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCAAATTGTGAGTGCAGCATTTAATGGTGGGATTCACATTAAAAT  350

seq1  CCAATGTACAATGATGAAAATCATGTCCCCTAACACAAAAGTGCACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTACAATGATGAAAATCATGTCCCCTAACACAAAAGTGCACATGT  400

seq1  ATGCACACACACACACACACACAGAGAGAGAGAGAGAGAGAGTTTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACACACACACACACAGAGAGAGAGAGAGAGAGAGTTTATGAA  450

seq1  CAGAACTCAGATTTGTTTGTTCTGGTTTGTGCATCACACACATCCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCAGATTTGTTTGTTCTGGTTTGTGCATCACACACATCCCCCAT  500

seq1  GAGTACACACTTTTAGGGAGGCTGGTCCACTGATTCTGGATTAATTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACACTTTTAGGGAGGCTGGTCCACTGATTCTGGATTAATTGGTT  550

seq1  AACTTAACAAACGGTATTAGAATCTGGGTATTTTTCAGGATTAACATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACAAACGGTATTAGAATCTGGGTATTTTTCAGGATTAACATGAT  600

seq1  CCCCAAGGTCATGATCACTGTTGGCACAGCTACTGAGAAATTTTTTTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGTCATGATCACTGTTGGCACAGCTACTGAGAAATTTTTTTCGG  650

seq1  TTAAATTACAGCTTAGTAGTATCTTGAGACATAAAAACACCTAACCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACAGCTTAGTAGTATCTTGAGACATAAAAACACCTAACCTCCC  700

seq1  CAAAAACTAAATAGAGAAATGTTTAGGCTAGGTTAGGCCCTAAGCATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTAAATAGAGAAATGTTTAGGCTAGGTTAGGCCCTAAGCATTTC  750

seq1  ATTGCAATGTAGATCTTACTAAACTGGGTCTATGGAGCTATATTCACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGTAGATCTTACTAAACTGGGTCTATGGAGCTATATTCACTAT  800

seq1  GATTACAGAAACTATGCCTCAAATAAAAATTAATAATAAAAATTTGGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGAAACTATGCCTCAAATAAAAATTAATAATAAAAATTTGGGGC  850

seq1  TGGGCTTGGTAACACATTCTTTTAATCTCAGCACTTGTGAGACATAGACA  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGGT-ACACATTCTTTTAATCTCAGCACTTGTGAGACATAGACA  899

seq1  GGCAGATCTCCATGAGTTC-AAGGCCAGCCTGGTCTACACAGCCAGTTCC  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCAGATCTCCATGAGTTCAAAGGCCAGCCTGGTCTACACAGCCAGTTCC  949

seq1  AGGAGAGCCATAAAACAGAGAAA-CCTTGTCTCAAAAAAAAAAAAAAAAA  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  AGGAGAGCCATAAAACAGAGAAACCCTTGTCTCAAAAAAAAAAAAAAAAT  999

seq1  GGAAGGAAGGACGGAAGGGAGGGAGGGTAGAGTTGTACACATTGGAT-GA  1047
      |  ||||| ||||||  |||||  || |||||||||||||||||||| ||
seq2  G--AGGAA-GACGGA--GGAGGAGGGTTAGAGTTGTACACATTGGATGGA  1044

seq1  AGAT-AAACAGCTGCATTTC-TCTAGATCC-TGTGTGCTAGTTGACCACA  1094
      |||| ||||||||||||||| ||||||||| |||||||||| ||||||||
seq2  AGATAAAACAGCTGCATTTCTTCTAGATCCTTGTGTGCTAGCTGACCACA  1094

seq1  TGGTAAATCATAATTATAACTACC  1118
      ||||||||||| ||||||||||||
seq2  TGGTAAATCAT-ATTATAACTACC  1117


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