BAC Information

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BAC

Clone NameB6Ng01-211F03
Chromosome8 (Build37)
Map Location 83,240,171 - 83,394,762
singlet/doubletdoublet
Overlap geneSmarca5, Gab1, LOC666237
Upstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211F03.bB6Ng01-211F03.g
ACCGA029419GA029420
length1,1041,166
definitionB6Ng01-211F03.b B6Ng01-211F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,240,171 - 83,241,287)(83,393,591 - 83,394,762)
sequence
gaattcccgagttgtcctctggcctccacttatacattaggcagaaatgt
gttgacatactttctaaataactaaattttttaaaattaaaagaaagttc
tagtaggtaaaatcaggatatttataaaatgaacacatctattaagcaca
cacagtatttacttgttcatctcttaccatagcctgaagatcaacttgcg
gattccaatctgagtcatataaaatgactacatcagcagttgcaagattg
atgcccagaccaccagcacgtgtgcttagcataaatacaaactttgtgct
atttggttcattgtatgcattgatggagtcctatggaaataaaataacaa
gtgttagaaatttttgttgtatttggttttttgttctttcaggggttctt
agggtttgttttttgtatttttgagacagggtttctctgtgtagccctgg
ctattctggaactcactttgtagaccaggctggcctcgaacacagaaatc
cacctgcctctgcctctctttcttctctctctctcctctctctctctctc
tctctctctctctcaaaagacgatctacgtagccctagctggtctggata
tgtagacctcctcctgactcctgagtattggatttaaaggtactctccac
cataaccaagactggtgggtgggatatttttatattgcccacactagctc
aagtacccgctcctcctgaagttacaagcagctgggactacaggttgata
ccatcatgcctggcttagaaattactttatctaggacatggtagcacata
cctataatcaatcccagcacgcaggaagaggcagttcaagatcatactca
actacactgaatttcagactagcctagatatataagtctttatctgatat
gatggctcagtagttgaaagcactggctgcttcttctagaggacactagt
tcaatccccagcaccatgtagcagctcacaaccatctgtgtactctagtt
cccagggtcaatgcccacactggctcttggcatcagcacatacaaggtac
agatagactgaccttaggcaaagactatcacacaaaaataaatctcaaga
aaaa
gaattctgtgggctccacagtgttactcagtgcaggagaacacagacaca
cagttggcttcagtgttcgggtgctgggtgcacccacaagcagtacctgg
ctcaggatggaaggttccacagcttatctgctggctgagtaaataaacag
gtatttcgggagctttggtcctgggccttatgtggaatgcagtgcagaca
cctgtccactccctgcctgtaaggagtttctgatctgtgaaaaccagctg
tagcttcatgaacacttagctttcctcagagattggctggggagctctct
gtgtttagttgccaaatgagggctccaggttgtagttgcctaagagtcga
gactgagagagggagggaagaggatgaccccagaaaacttcccatcagag
tctcaagctgttccaggaaggattgaggtgcagccccccccctctcggta
gcaaaatcctaagggaaagatgttttagatgaacaaagagtccttagcag
tgacacgaagggcctcaggatgctggagctcaggcctggggtttgcatgt
cagctgtaactttctcattggcaaagtttttgtttctgctatgacttaat
aaggttctcatgggcacctagccacagtgtgttttccgcaaccaagaaga
cagaaacacagcaacccgtgcggtcacctgggcttattaaaattccaagg
gacctgcgttagttaagatttctttatgtctgttttgagctaagtaattc
attctggcaagccttcagtttacaacagagagggcgcatgttcgtgtggg
aagggagaataaaggagtctttgattcatttgcttctgagctgctagtgc
ctgaacttgggactttggaggccatcttagcccagctgtgtgagggccag
ccagtgttgcagggcgagaataaccgccattggctcgcttgaaagcgttc
tgactgtcgatggggtgttgagtcctctcattccacaattcctggcatac
atggtgccgtctcatccatcctagtcttcctggagctgccatttgaactg
aagtcacaatttcctggtactctttatctcagaccggtgtgttcactaag
gtatagaagccttagtgtccaggctatatctctcccttgaattagagact
cataaaatcgagtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83240171_83241287
seq2: B6Ng01-211F03.b_45_1148

seq1  GAATTCCCGAGTTGTCCTCTGGCCTCCACTTATACATTAGGCAGAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGAGTTGTCCTCTGGCCTCCACTTATACATTAGGCAGAAATGT  50

seq1  GTTGACATACTTTCTAAATAACTAAATTTTTTAAAATTAAAAGAAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATACTTTCTAAATAACTAAATTTTTTAAAATTAAAAGAAAGTTC  100

seq1  TAGTAGGTAAAATCAGGATATTTATAAAATGAACACATCTATTAAGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTAAAATCAGGATATTTATAAAATGAACACATCTATTAAGCACA  150

seq1  CACAGTATTTACTTGTTCATCTCTTACCATAGCCTGAAGATCAACTTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTTACTTGTTCATCTCTTACCATAGCCTGAAGATCAACTTGCG  200

seq1  GATTCCAATCTGAGTCATATAAAATGACTACATCAGCAGTTGCAAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAATCTGAGTCATATAAAATGACTACATCAGCAGTTGCAAGATTG  250

seq1  ATGCCCAGACCACCAGCACGTGTGCTTAGCATAAATACAAACTTTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGACCACCAGCACGTGTGCTTAGCATAAATACAAACTTTGTGCT  300

seq1  ATTTGGTTCATTGTATGCATTGATGGAGTCCTATGGAAATAAAATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTCATTGTATGCATTGATGGAGTCCTATGGAAATAAAATAACAA  350

seq1  GTGTTAGAAATTTTTGTTGTATTTGGTTTTTTGTTCTTTCAGGGGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAAATTTTTGTTGTATTTGGTTTTTTGTTCTTTCAGGGGTTCTT  400

seq1  AGGGTTTGTTTTTTGTATTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGTTTTTTGTATTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG  450

seq1  CTATTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACACAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACACAGAAATC  500

seq1  CACCTGCCTCTGCCTCTCTTTCTTCTCTCTCTCTCCTCTCTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCTCTTTCTTCTCTCTCTCTCCTCTCTCTCTCTCTC  550

seq1  TCTCTCTCTCTCTCAAAAGACGATCTACGTAGCCCTAGCTGGTCTGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCAAAAGACGATCTACGTAGCCCTAGCTGGTCTGGATA  600

seq1  TGTAGACCTCCTCCTGACTCCTGAGTATTGGATTTAAAGGTACTCTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCTCCTCCTGACTCCTGAGTATTGGATTTAAAGGTACTCTCCAC  650

seq1  CATAACCAAAACTGGTGGGTGGGATATTTTTATATTGCCCACACTAGCTC  700
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCAAGACTGGTGGGTGGGATATTTTTATATTGCCCACACTAGCTC  700

seq1  AAGTACCCGCTCCTCCTGAAGTTACAAGCAGCTGGGACTACAGGTTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCGCTCCTCCTGAAGTTACAAGCAGCTGGGACTACAGGTTGATA  750

seq1  CCATCATGCCTGGCTTAGGAAATTACTTTATCTAGGACATGGTAGCACAT  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATCATGCCTGGCTTA-GAAATTACTTTATCTAGGACATGGTAGCACAT  799

seq1  ACCTATAATCAATCCCAGCACGCAGGAAGAGGCAGTTCAAGATCATACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATCAATCCCAGCACGCAGGAAGAGGCAGTTCAAGATCATACTC  849

seq1  AACTACACTGAATTTCAGACTAGCCTAGATATATAAGTCTTTATCTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACACTGAATTTCAGACTAGCCTAGATATATAAGTCTTTATCTGATA  899

seq1  TGATGGCTCAGTAGTTAAAAGCACTGGCTGC-TCTTCTAGAGGACCCTAG  949
      |||||||||||||||| |||||||||||||| ||||||||||||| ||||
seq2  TGATGGCTCAGTAGTTGAAAGCACTGGCTGCTTCTTCTAGAGGACACTAG  949

seq1  TTCAATCCCCAGCACCCATGTAGCAGCTCACAACCATCTGTTGTTACTCT  999
      |||||||||||||| ||||||||||||||||||||||||||   ||||||
seq2  TTCAATCCCCAGCA-CCATGTAGCAGCTCACAACCATCTGT--GTACTCT  996

seq1  AGTTCCCAGGGTTCCAATGCCCACCACTGGCCTCCTTGGCCACCAGGCAC  1049
      ||||||||||||  ||||||||| |||||||   ||||| || || ||||
seq2  AGTTCCCAGGGT--CAATGCCCA-CACTGGC--TCTTGG-CATCA-GCAC  1039

seq1  ATACAAGGTACAGATAGACAGACACTTAGGCAAAACACTATCACAC-AAA  1098
      ||||||||||||||||||| ||| ||||||| ||| |||||||||| |||
seq2  ATACAAGGTACAGATAGACTGAC-CTTAGGC-AAAGACTATCACACAAAA  1087

seq1  ATAAATTTTAAAAGAAAAA  1117
      |||||| |   ||||||||
seq2  ATAAATCT--CAAGAAAAA  1104

seq1: chr8_83393591_83394762
seq2: B6Ng01-211F03.g_63_1228 (reverse)

seq1  AATACT-AATTTTATCTGTGCTCTAATCCAAGGGGAGAGAAAAAGAGCCT  49
      ||||||  |||||||  || ||||||| |||||   |||| | | |||||
seq2  AATACTCGATTTTATGAGT-CTCTAATTCAAGG---GAGAGATATAGCCT  46

seq1  TGAGACACTAAGCTTTCTATA-CTTAGTGGACACA-CGGGCTGAGATAAA  97
         |||||||||  ||||||| ||||||| ||||| ||| ||||||||||
seq2  --GGACACTAAGGCTTCTATACCTTAGTGAACACACCGGTCTGAGATAAA  94

seq1  GAGTCACAG--AAATGTGACTTCAAGTTCAAATGGCAGCTTCAGAGAGAA  145
      ||||  |||  || ||||||||| |||||||||||||||| ||| ||  |
seq2  GAGTACCAGGAAATTGTGACTTC-AGTTCAAATGGCAGCTCCAG-GAAGA  142

seq1  CTAGGGATGGATGGAGACGGGCCACCATGTTAATGCCAGGAA-TGT-GAA  193
      ||| |||||||| |||||||  ||||||||  |||||||||| ||| |||
seq2  CTA-GGATGGAT-GAGACGG--CACCATGT--ATGCCAGGAATTGTGGAA  186

seq1  TGAGAGGACCTCCAACACCCCATCGACAGTCAGAACGCTTTCAAGCGAGC  243
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAC--TCAACACCCCATCGACAGTCAGAACGCTTTCAAGCGAGC  234

seq1  CAATGGC-GTTATTCTCGCCCTGCAACACTGGCTGGCCCTCACACAGCTG  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCGGTTATTCTCGCCCTGCAACACTGGCTGGCCCTCACACAGCTG  284

seq1  GGCTAAGATGGCCTCCAAAGT-CCAAGTTCAGGCACTAGCAGCTCAGAAG  341
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCTAAGATGGCCTCCAAAGTCCCAAGTTCAGGCACTAGCAGCTCAGAAG  334

seq1  CAAATGAATCAAAGACTCCTTTATTCT-CCTTCCCACACGAACATGCGCC  390
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAATGAATCAAAGACTCCTTTATTCTCCCTTCCCACACGAACATGCGCC  384

seq1  CTCTCTGTTGTAAACTGAAGGCTTGCCAGAATGAATTACTTAGCTCAAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTGTAAACTGAAGGCTTGCCAGAATGAATTACTTAGCTCAAAA  434

seq1  CAGACATAAAGAAATCTTAACTAACGCAGGTCCCTTGGAATTTTAATAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAAAGAAATCTTAACTAACGCAGGTCCCTTGGAATTTTAATAAG  484

seq1  CCCAGGTGACCGCACGGGTTGCTGTGTTTCTGTCTTCTTGGTTGCGGAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGACCGCACGGGTTGCTGTGTTTCTGTCTTCTTGGTTGCGGAAA  534

seq1  ACACACTGTGGCTAGGTGCCCATGAGAACCTTATTAAGTCATAGCAGAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGTGGCTAGGTGCCCATGAGAACCTTATTAAGTCATAGCAGAAA  584

seq1  CAAAAACTTTGCCAATGAGAAAGTTACAGCTGACATGCAAACCCCAGGCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTTGCCAATGAGAAAGTTACAGCTGACATGCAAACCCCAGGCC  634

seq1  TGAGCTCCAGCATCCTGAGGCCCTTCGTGTCACTGCTAAGGACTCTTTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCAGCATCCTGAGGCCCTTCGTGTCACTGCTAAGGACTCTTTGT  684

seq1  TCATCTAAAACATCTTTCCCTTAGGATTTTGCTACCGAGAGGGGGGGGGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAAACATCTTTCCCTTAGGATTTTGCTACCGAGAGGGGGGGGGC  734

seq1  TGCACCTCAATCCTTCCTGGAACAGCTTGAGACTCTGATGGGAAGTTTTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCAATCCTTCCTGGAACAGCTTGAGACTCTGATGGGAAGTTTTC  784

seq1  TGGGGTCATCCTCTTCCCTCCCTCTCTCAGTCTCGACTCTTAGGCAACTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCATCCTCTTCCCTCCCTCTCTCAGTCTCGACTCTTAGGCAACTA  834

seq1  CAACCTGGAGCCCTCATTTGGCAACTAAACACAGAGAGCTCCCCAGCCAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGAGCCCTCATTTGGCAACTAAACACAGAGAGCTCCCCAGCCAA  884

seq1  TCTCTGAGGAAAGCTAAGTGTTCATGAAGCTACAGCTGGTTTTCACAGAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGAAAGCTAAGTGTTCATGAAGCTACAGCTGGTTTTCACAGAT  934

seq1  CAGAAACTCCTTACAGGCAGGGAGTGGACAGGTGTCTGCACTGCATTCCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTCCTTACAGGCAGGGAGTGGACAGGTGTCTGCACTGCATTCCA  984

seq1  CATAAGGCCCAGGACCAAAGCTCCCGAAATACCTGTTTATTTACTCAGCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCCCAGGACCAAAGCTCCCGAAATACCTGTTTATTTACTCAGCC  1034

seq1  AGCAGATAAGCTGTGGAACCTTCCATCCTGAGCCAGGTACTGCTTGTGGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAGCTGTGGAACCTTCCATCCTGAGCCAGGTACTGCTTGTGGG  1084

seq1  TGCACCCAGCACCCGAACACTGAAGCCAACTGTGTGTCTGTGTTCTCCTG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCAGCACCCGAACACTGAAGCCAACTGTGTGTCTGTGTTCTCCTG  1134

seq1  CACTGAGTAACACTGTGGAGCCCACAGAATTC  1172
      ||||||||||||||||||||||||||||||||
seq2  CACTGAGTAACACTGTGGAGCCCACAGAATTC  1166