BAC Information

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BAC

Clone NameB6Ng01-211G18
Chromosome8 (Build37)
Map Location 19,798,262 - 19,802,968
singlet/doubletdoublet
Overlap genenone
Upstream geneMcph1, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567
Downstream geneLOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211G18.bB6Ng01-211G18.g
ACCGA029493GA029494
length8581,095
definitionB6Ng01-211G18.b B6Ng01-211G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,798,262 - 19,799,124)(19,801,875 - 19,802,968)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctttggggttttttattaatattaattagaac
attgatagatttctctaattattacccacatcaaggtctccttaggaggg
cagccttttattaatttttttgtgagatctgtgctaaatttctacagtat
tcaacagtccagtcttgagaagttccaggtctttctttaaaaaaaaaaaa
tcacagaattaaataaacaaaactccctgaatccatcctttaaatgctac
ctttagaaattttaagatagagatttaaggataagaaaataaagattagt
tatactacattattacacttaatattgataatttatactcttgtgtccat
ctttatttcaatatcttctatggaatattttctcctttactttctgttct
gatttttttttaacacttgatcttagccaaaaggcagagaagcgatggca
tttttttttttttaaatatcatcatgtatgtactcacttcaggttcctca
gtcttgagttagtatcaagaaaaggcaattataagctgggcagtggtggt
ggcacatgcctttaatcccagcacttgggagtcagaggcacgtgtatttc
tgagttcgaggccagcctgttctacagagtgagttccaggacagccagga
ctacacagagaaaccctgtctggaaaaaaaccaaaaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaagaaagaa
agaaaggg
gaattccataaccattacagttggccaaccacagcataaaccaagactta
agcacaaatggaaaataagaggaatcttatgtcatagtctgtgagatgga
aggaaagacaaggcagacctcaggaaatgatgatggtaatgaaaataatc
aatgaagaaatgaatgactaaggtatgtgtgtgggaggggtacaggtatg
gaatccagagctctgtagacaggcacagaaggatcacagaaattttaaga
agtcagaggctagtttgatctaatctgactttcatagtgaattccagcac
agcccaacctagcaaggtactgtatttatagagaaaaagtttaaaaaggc
aagtcttcattgagctttgtgaatcaattaattaaattatgctgatcaat
taacactacagtgtcaactaataggtcaaattcccattgactcactggag
gatctattaatgctactgaaatcaattacagctaccgcatcaatttgttc
ttttatggtctgacatctccctcaccagctcagcatcctatcttgctgga
cagcttttcataggatgctatccagtctcaccccaatcacaagaagaaaa
attgaacagttaacctgttgcaggcagcatattattgcttcttcaaaccc
aaccagcacactcctactcattagcagtaagatggagccattggcatagt
ttaccttcccagattccttgtatttctctgacctagagtccctctagctc
ccagacttcttgaatttccccctatataacattctttgatactcctccca
cttaaaattcatctttccttgttagaaatatctgcttcttcttggtggta
tccagagtccaggtgttctcaaaaacacattgcattctctattaacccat
tacccatgggataaacagagtgagaacctagaatttcctctcattttccc
aggggaggcaaatgcaggctgtcactgttgctaacaacaatggtgcacat
tgtgctttgaaactggagatggacaaaaatcaacccaaccattcaacaaa
ccaaaaactgggcatggggaagcactcaagaaaaaagggagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19798262_19799124
seq2: B6Ng01-211G18.b_49_906

seq1  GAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA  50

seq1  GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA  100

seq1  ATCAGGGACTAGACAAGGCTTTGGGGTTTTTTATTAATATTAATTAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGACTAGACAAGGCTTTGGGGTTTTTTATTAATATTAATTAGAAC  150

seq1  ATTGATAGATTTCTCTAATTATTACCCACATCAAGGTCTCCTTAGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGATTTCTCTAATTATTACCCACATCAAGGTCTCCTTAGGAGGG  200

seq1  CAGCCTTTTATTAATTTTTTTGTGAGATCTGTGCTAAATTTCTACAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTTATTAATTTTTTTGTGAGATCTGTGCTAAATTTCTACAGTAT  250

seq1  TCAACAGTCCAGTCTTGAGAAGTTCCAGGTCTTTCTTT-AAAAAAAAAAA  299
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAACAGTCCAGTCTTGAGAAGTTCCAGGTCTTTCTTTAAAAAAAAAAAA  300

seq1  TCACAGAATTAAATAAACAAAACTCCCTGAATCCATCCTTTAAAGGCTAC  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCACAGAATTAAATAAACAAAACTCCCTGAATCCATCCTTTAAATGCTAC  350

seq1  CTTTAGAAATTTTAAGATAGAGATTTAAGGATAAGAAAATAAAGATTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAATTTTAAGATAGAGATTTAAGGATAAGAAAATAAAGATTAGT  400

seq1  TATACTACATTATTACACTTAATATTGATAATTTATACTCTTGTGTCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACATTATTACACTTAATATTGATAATTTATACTCTTGTGTCCAT  450

seq1  CTTTATTTCAATATCTTCTATGGAATATTTTCTCCTTTACTTTCTGTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCAATATCTTCTATGGAATATTTTCTCCTTTACTTTCTGTTCT  500

seq1  GATTTTTTTTTAACACTTGATCTTAGCCAAAAGGCAGAGAAGCGATGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTAACACTTGATCTTAGCCAAAAGGCAGAGAAGCGATGGCA  550

seq1  TTTTTTTTTTTTTTAAATATCATCATGTATGTACTCACTTCAGGTTCCTC  599
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTTTTTTTTTAAATATCATCATGTATGTACTCACTTCAGGTTCCTC  599

seq1  AGTCTTGAGTTAGTATCAAGAAAAGGCAATTATAAGCTGGGCAGTGGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAGTTAGTATCAAGAAAAGGCAATTATAAGCTGGGCAGTGGTGG  649

seq1  TGGCACATGCCTTTAATCCCAGCACTTGGGAGTCAGAGGCACGTGTATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATGCCTTTAATCCCAGCACTTGGGAGTCAGAGGCACGTGTATTT  699

seq1  CTGAGTTCGAGGCCAGCCTGTTCTACAGAGTGAGTTCCAGGACAGCCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGTTCTACAGAGTGAGTTCCAGGACAGCCAGG  749

seq1  GCTACACAGAGAAACCCTGTCTGGAAAAAAACCAAAAAAGAAAGAAAGAA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGAGAAACCCTGTCTGGAAAAAAACCAAAAAAGAAAGAAAGAA  799

seq1  AGAAAGAAAGAAAGAAAGAAAGAAACAAAGAAAGAAACAAAGAAAGAAAG  849
      ||||||||||||||||||||||||| |||||||||||      |||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA-----GAAGAAAG  844

seq1  AAAGAAAGAAAGGG  863
      ||||||||||||||
seq2  AAAGAAAGAAAGGG  858

seq1: chr8_19801875_19802968
seq2: B6Ng01-211G18.g_65_1159 (reverse)

seq1  TCTACTTCCTTTTTCTCTGAGTGCTTCCC--TGCCCGTTTTTTGTTTTGT  48
      |||||| |||||||   ||||||||||||  |||||  |||||| |||| 
seq2  TCTACTCCCTTTTTTCTTGAGTGCTTCCCCATGCCCAGTTTTTGGTTTG-  49

seq1  TTTGGTTGGTTTGGTTTGGTTTTTGT-CATCTCCAGTTTCAAGGCAC-AT  96
       |||  ||| |||| ||| ||||||| ||||||||||||||| |||| ||
seq2  -TTGAATGG-TTGGGTTGATTTTTGTCCATCTCCAGTTTCAAAGCACAAT  97

seq1  GTGCA-CAATGTGGTTAGCAACAGTGACAGGCTTGCATTTTGCCT-CCCT  144
      ||||| || ||| |||||||||||||||| || |||| ||||||| ||||
seq2  GTGCACCATTGTTGTTAGCAACAGTGACA-GCCTGCA-TTTGCCTCCCCT  145

seq1  GGGAAAATGAGAGGAA--TCTAGGTTCTCACTCTGTGTTTAT-CCATGGG  191
      ||||||||||||||||  |||||||||||||||  ||||||| |||||||
seq2  GGGAAAATGAGAGGAAATTCTAGGTTCTCACTC--TGTTTATCCCATGGG  193

seq1  TAATGGGTTAATAGAGAATGC-ATGTGTTTTTGAGAACACCTGGACTCTG  240
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATGGGTTAATAGAGAATGCAATGTGTTTTTGAGAACACCTGGACTCTG  243

seq1  GATACCACCAAGAAGAAGCAGATATTTCTAAACAAGGAAAGATGAATTTT  290
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATACCACCAAGAAGAAGCAGATATTTCT-AACAAGGAAAGATGAATTTT  292

seq1  AAGTGGGAGGAGTAATCAAAGAATGTTATATAGGGGGAAATTCAAGAAGT  340
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAGGAGT-ATCAAAGAATGTTATATAGGGGGAAATTCAAGAAGT  341

seq1  CTGGGAGCTAGAGGGACTCTAGGTCAGAGAAATACAAGGAATCTGGGAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCTAGAGGGACTCTAGGTCAGAGAAATACAAGGAATCTGGGAAG  391

seq1  GTAAACTATGCCAATGGCTCCATCTTACTGCTAATGAGTAGGAGTGTGCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTATGCCAATGGCTCCATCTTACTGCTAATGAGTAGGAGTGTGCT  441

seq1  GGTTGGGTTTGAAGAAGCAATAATATGCTGCCTGCAACAGGTTAACTGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTTTGAAGAAGCAATAATATGCTGCCTGCAACAGGTTAACTGTT  491

seq1  CAATTTTTCTTCTTGTGATTGGGGTGAGACTGGAAAGCATCCTATGAAAA  540
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAATTTTTCTTCTTGTGATTGGGGTGAGACTGGATAGCATCCTATGAAAA  541

seq1  GCTGTCCAGCAAGATAGGATGCTGAGCTGGTGAGGGAGATGTCAGACCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGCAAGATAGGATGCTGAGCTGGTGAGGGAGATGTCAGACCAT  591

seq1  AAAAGAACAAATTGATGCGGTAGCTGTAATTGACTTCAGTAGCATTAATA  640
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAGAACAAATTGATGCGGTAGCTGTAATTGATTTCAGTAGCATTAATA  641

seq1  GATCCTCCAGTGAGTCAATGGGAATTTGACCTATTAGTTGACACTGTAGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCAGTGAGTCAATGGGAATTTGACCTATTAGTTGACACTGTAGT  691

seq1  GTTAATTGATCAGCATAATTTAATTAATTGATTCACAAAGCTCAATGAAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTGATCAGCATAATTTAATTAATTGATTCACAAAGCTCAATGAAG  741

seq1  ACTTGCCTTTTTAAACTTTTTCTCTATAAATACAGTACCTTGCTAGGTTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTTTTTAAACTTTTTCTCTATAAATACAGTACCTTGCTAGGTTG  791

seq1  GGCTGTGCTGGAATTCACTATGAAAGTCAGATTAGATCAAACTAGCCTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCTGGAATTCACTATGAAAGTCAGATTAGATCAAACTAGCCTCT  841

seq1  GACTTCTTAAAATTTCTGTGATCCTTCTGTGCCTGTCTACAGAGCTCTGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTAAAATTTCTGTGATCCTTCTGTGCCTGTCTACAGAGCTCTGG  891

seq1  ATTCCATACCTGTACCCCTCCCACACACATACTTTAGTCATTCATTTCTT  940
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTCCATACCTGTACCCCTCCCACACACATACCTTAGTCATTCATTTCTT  941

seq1  CATTGATTATTTTCATTACCATCATCATTTCCTGAGGTCTGCCTTGTCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTATTTTCATTACCATCATCATTTCCTGAGGTCTGCCTTGTCTT  991

seq1  TCCTTCCATCTCACAGACTATGACATAAGATTCCTCTTATTTTCCATTTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATCTCACAGACTATGACATAAGATTCCTCTTATTTTCCATTTG  1041

seq1  TGCTTAAGTCTTGGTTTATGCTGTGGTTGGCCAACTGTAATGGTTATGAA  1090
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTTAAGTCTTGGTTTATGCTGTGGTTGGCCAACTGTAATGGTTATGGA  1091

seq1  ATTC  1094
      ||||
seq2  ATTC  1095