BAC Information

Click to search

BAC

Clone NameB6Ng01-211L01
Chromosome8 (Build37)
Map Location 58,390,805 - 58,499,414
singlet/doubletdoublet
Overlap geneGlra3, LOC664812
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29
Downstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211L01.bB6Ng01-211L01.g
ACCGA029684GA029685
length1,1681,057
definitionB6Ng01-211L01.b B6Ng01-211L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,390,805 - 58,391,980)(58,498,348 - 58,499,414)
sequence
gaattcatctcaaaacctaaaattccacttttgttttgttttgatttgat
ttgtttgcgctttctgggaatgctttttctgtataatattctagctttta
gggataatgatttgggtttttcctgtcattgattttatttttataaatgc
ttttattcaagtacgtgaaaaacaagttatcagtccagtataaaaagcta
tgtgttatgctgaaataatgtattccctattgagtatatgtgttatagtg
gtaagttatctgagttagtagttaatgatattgttgcctgaaggaaaatg
aagatgtgaagtcaataaatataattgttccttctagctctttccctcat
acaagcagataaaaaatattgaaagataaaaataaacatttcaaaggaaa
gttttatgtaatcttaaacaaaatgaagtagcaacaaaaactacaagtag
acaatctgcaatgtaaatgtacatgcttagattgatataagcagaatact
ccatatctatagatagaataaaacaagaaagcaattgtgcattttggttg
aactatacctataataattaattaagaagggaaacattttatctggaaac
aagaaataagcagcacttatagtcttaggcttatatcaaaacaccatgct
gcttgtgaaggaaaataggtcatataacactattttggatgaatatgatt
tgttatgaaatgtacaaaaggaatggaaaccagacatcccatatgttcat
agagatgctatggctgtacttattgcagccagcatagttagatttcctgt
aaataggtaatagtcaaaatgatacacacacacacatatcaacaatgaaa
atatttactgtggtataatatcaagcacacatgcagcttttagtctaacg
aaatagattgggtctatttgaagtaactcagagtatagaacccattttga
ttattttgtgaagtatttttttcaatagtgagaatatgttgagcccaaat
aatatttttatagactgtaaaatgcagtcatctgtttgaactatctgtat
gcttaaaagtataaattccaaaattcaccactttctatactttataagct
ctaaaaaatatattcttctatttttacggcttccactctcagattatgag
aaacaggtgccataagcc

gaattcatcacaaacctttcaaatatctaatactaggaaattaacttttt
aagctacagatcataaagaagctctatttagacacttggtcctctaaaaa
agaggagtcacagagatgagggtttgaaattgctttcctctcaatgcatt
tttctctctgagtcattagcactttttgtcttgggcacatttctgttttc
tcctggaattaaaaaaaaacaaaacatgcttttaaacaatttatttgttt
aacaacacgatattgttactaaacaatcatgtattttataatattctttc
caggaaatttaacattaaagaaagatcttcaggatccccttttgagataa
tggttaaggcctgtcttgtggacgaatatatcaaaatgagatttattcat
aaacttgatggaggtcactaaggtgtgtaataattccacacacctatttt
ctgcaactcttcccataaatgagcccatttctggttgatgcttagaaatg
agagttcagaagaatgctgcctgacactggttactcatgcatggaattaa
aagtattccagaccaaagatattactatacttggggtggctttgctacta
taaaagtaattcagtgagatcaagatgttaacagatccaatgttaatatt
aaaagtcaatccatatgtttttaggctgttcctagaagtgaaatgagtta
ctgaacctaaatataacatagattgctctacaaatgctattacagcgctc
aaaaagtaaaaatgtctttacaggaacttaactcattgacaacagactca
aaacaccaagtattcatatctggcagaggttacaaaaaggacaaaacaac
agacttcccttaaattgtgcacatttctttccatttgtcatgagaaatat
gttacaatgaatttaataaataaatgctcttaatgtttagatttaaaaag
tattcttgttgaagggattatatccctccacagaaacaccagacgaagtt
atcagcacaaaatagattcattgcccaaggggggacaaatgctggatggt
aacatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58390805_58391980
seq2: B6Ng01-211L01.b_44_1211

seq1  GAATTCATCTCAAAACCTAAAATTCCACTTTTGTTTTGTTTTGATTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAAAACCTAAAATTCCACTTTTGTTTTGTTTTGATTTGAT  50

seq1  TTGTTTGCGCTTTCTGGGAATGCTTTTTCTGTATAATATTCTAGCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCGCTTTCTGGGAATGCTTTTTCTGTATAATATTCTAGCTTTTA  100

seq1  GGGATAATGATTTGGGTTTTTCCTGTCATTGATTTTATTTTTATAAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATGATTTGGGTTTTTCCTGTCATTGATTTTATTTTTATAAATGC  150

seq1  TTTTATTCAAGTACGTGAAAAACAAGTTATCAGTCCAGTATAAAAAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAAGTACGTGAAAAACAAGTTATCAGTCCAGTATAAAAAGCTA  200

seq1  TGTGTTATGCTGAAATAATGTATTCCCTATTGAGTATATGTGTTATAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATGCTGAAATAATGTATTCCCTATTGAGTATATGTGTTATAGTG  250

seq1  GTAAGTTATCTGAGTTAGTAGTTAATGATATTGTTGCCTGAAGGAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTATCTGAGTTAGTAGTTAATGATATTGTTGCCTGAAGGAAAATG  300

seq1  AAGATGTGAAGTCAATAAATATAATTGTTCCTTCTAGCTCTTTCCCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGAAGTCAATAAATATAATTGTTCCTTCTAGCTCTTTCCCTCAT  350

seq1  ACAAGCAGATAAAAAATATTGAAAGATAAAAATAAACATTTCAAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGATAAAAAATATTGAAAGATAAAAATAAACATTTCAAAGGAAA  400

seq1  GTTTTATGTAATCTTAAACAAAATGAAGTAGCAACAAAAACTACAAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTAATCTTAAACAAAATGAAGTAGCAACAAAAACTACAAGTAG  450

seq1  ACAATCTGCAATGTAAATGTACATGCTTAGATTGATATAAGCAGAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGCAATGTAAATGTACATGCTTAGATTGATATAAGCAGAATACT  500

seq1  CCATATCTATAGATAGAATAAAACAAGAAAGCAATTGTGCATTTTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTATAGATAGAATAAAACAAGAAAGCAATTGTGCATTTTGGTTG  550

seq1  AACTATACCTATAATAATTAATTAAGAAGGGAAACATTTTATCTGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACCTATAATAATTAATTAAGAAGGGAAACATTTTATCTGGAAAC  600

seq1  AAGAAATAAGCAGCACTTATAGTCTTAGGCTTATATCAAAACACCATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAGCAGCACTTATAGTCTTAGGCTTATATCAAAACACCATGCT  650

seq1  GCTTGTGAAGGAAAATAGGTCATATAACACTATTTTGGATGAATATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAAGGAAAATAGGTCATATAACACTATTTTGGATGAATATGATT  700

seq1  TGTTATGAAATGTACAAAAGGAATGGAAACCAGACATCCCATATGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAAATGTACAAAAGGAATGGAAACCAGACATCCCATATGTTCAT  750

seq1  AGAGATGCTATGGCTGTACTTATTGCAGCCAGCATAGTTAGATTTCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTATGGCTGTACTTATTGCAGCCAGCATAGTTAGATTTCCTGT  800

seq1  AAATAGGTAATAGTCAAAATGATACACACACACACATATCAACAATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTAATAGTCAAAATGATACACACACACACATATCAACAATGAAA  850

seq1  ATATTTACTGTGGTATAATATCAAGCACACATGCAGCTTTTAGTCTAACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTGTGGTATAATATCAAGCACACATGCAGCTTTTAGTCTAACG  900

seq1  AAATAGATT-GGTCTATTTGAAGTAACTCAGAGTATAGAACCCATTTTGA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTGGGTCTATTTGAAGTAACTCAGAGTATAGAACCCATTTTGA  950

seq1  TTATTTTGTGAAGTA-TTTTTTCAATAGTGAGAAATATGTTGAGCCCAAA  998
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TTATTTTGTGAAGTATTTTTTTCAATAGTGAG-AATATGTTGAGCCCAAA  999

seq1  T-ATATTTTTATAGACTGTTAAAATGCAGTCATTCTGTTTGAACTATCTG  1047
      | |||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TAATATTTTTATAGACTG-TAAAATGCAGTCA-TCTGTTTGAACTATCTG  1047

seq1  TATGCTTAAAAGGTATAAATTCAAAATTTCA-CACTTTCTATACTTTAT-  1095
      ||||||||||| |||||||||| ||| |||| ||||||||||||||||| 
seq2  TATGCTTAAAA-GTATAAATTCCAAAATTCACCACTTTCTATACTTTATA  1096

seq1  AGCTCTTAATATATATTTTCTTCTATTTTTACTGTGCTTTCAATTTCTTT  1145
      ||||| ||| | |||| |||||||||||||||   |||| || | ||   
seq2  AGCTC-TAAAAAATATATTCTTCTATTTTTAC--GGCTTCCACTCTC---  1140

seq1  CTAGTATTTATGAGAAACA-GTGCCATAAGCC  1176
        ||   |||||||||||| ||||||||||||
seq2  --AG--ATTATGAGAAACAGGTGCCATAAGCC  1168


seq1: chr8_58498348_58499414
seq2: B6Ng01-211L01.g_64_1120 (reverse)

seq1  ATATGTTCCCATTCCCAGCCTTTTGTCCCCCCTTGGGCCAATGAAATCTA  50
      ||||||| ||||  |||| | |||||||||||||||| ||||| ||||||
seq2  ATATGTTACCAT--CCAG-CATTTGTCCCCCCTTGGG-CAATG-AATCTA  45

seq1  TTTTTGTGCTGATAACTTCGTCTTGGTGTTTCTTGTGAGGGATATTAATC  100
       ||||||||||||||||||||| ||||||||||   |||||||| |||||
seq2  -TTTTGTGCTGATAACTTCGTC-TGGTGTTTCTGTGGAGGGATA-TAATC  92

seq1  CCTTCAACAAGAATACTTTTTAAATCTAAAACATTAAAGAGCATTTATTT  150
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CCTTCAACAAGAATACTTTTTAAATCT-AAACATT-AAGAGCATTTATTT  140

seq1  ATTAAATTCATTGTAACATATTTCTCATGACAAATGGAAAGAAATGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTCATTGTAACATATTTCTCATGACAAATGGAAAGAAATGTGCA  190

seq1  CAATTTAAGGGAAGTCTGTTGTTTTGTCCTTTTTGTAACCTCTGCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAGGGAAGTCTGTTGTTTTGTCCTTTTTGTAACCTCTGCCAGAT  240

seq1  ATGAATACTTGGTGTTTTGAGTCTGTTGTCAATGAGTTAAGTTCCTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACTTGGTGTTTTGAGTCTGTTGTCAATGAGTTAAGTTCCTGTAA  290

seq1  AGACATTTTTACTTTTTGAGCGCTGTAATAGCATTTGTAGAGCAATCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTACTTTTTGAGCGCTGTAATAGCATTTGTAGAGCAATCTAT  340

seq1  GTTATATTTAGGTTCAGTAACTCATTTCACTTCTAGGAACAGCCTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTAGGTTCAGTAACTCATTTCACTTCTAGGAACAGCCTAAAAA  390

seq1  CATATGGATTGACTTTTAATATTAACATTGGATCTGTTAACATCTTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATTGACTTTTAATATTAACATTGGATCTGTTAACATCTTGATC  440

seq1  TCACTGAATTACTTTTATAGTAGCAAAGCCACCCCAAGTATAGTAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAATTACTTTTATAGTAGCAAAGCCACCCCAAGTATAGTAATATC  490

seq1  TTTGGTCTGGAATACTTTTAATTCCATGCATGAGTAACCAGTGTCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTGGAATACTTTTAATTCCATGCATGAGTAACCAGTGTCAGGCA  540

seq1  GCATTCTTCTGAACTCTCATTTCTAAGCATCAACCAGAAATGGGCTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTGAACTCTCATTTCTAAGCATCAACCAGAAATGGGCTCATT  590

seq1  TATGGGAAGAGTTGCAGAAAATAGGTGTGTGGAATTATTACACACCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGAGTTGCAGAAAATAGGTGTGTGGAATTATTACACACCTTAG  640

seq1  TGACCTCCATCAAGTTTATGAATAAATCTCATTTTGATATATTCGTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCATCAAGTTTATGAATAAATCTCATTTTGATATATTCGTCCAC  690

seq1  AAGACAGGCCTTAACCATTATCTCAAAAGGGGATCCTGAAGATCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCCTTAACCATTATCTCAAAAGGGGATCCTGAAGATCTTTCTT  740

seq1  TAATGTTAAATTTCCTGGAAAGAATATTATAAAATACATGATTGTTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAAATTTCCTGGAAAGAATATTATAAAATACATGATTGTTTAGT  790

seq1  AACAATATCGTGTTGTTAAACAAATAAATTGTTTAAAAGCATGTTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATCGTGTTGTTAAACAAATAAATTGTTTAAAAGCATGTTTTGTT  840

seq1  TTTTTTTAATTCCAGGAGAAAACAGAAATGTGCCCAAGACAAAAAGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTCCAGGAGAAAACAGAAATGTGCCCAAGACAAAAAGTGCT  890

seq1  AATGACTCAGAGAGAAAAATGCATTGAGAGGAAAGCAATTTCAAACCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCAGAGAGAAAAATGCATTGAGAGGAAAGCAATTTCAAACCCTC  940

seq1  ATCTCTGTGACTCCTCTTTTTTAGAGGACCAAGTGTCTAAATAGAGCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGACTCCTCTTTTTTAGAGGACCAAGTGTCTAAATAGAGCTTC  990

seq1  TTTATGATCTGTAGCTTAAAAAGTTAATTTCCTAGTATTAGATATTTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCTGTAGCTTAAAAAGTTAATTTCCTAGTATTAGATATTTGAA  1040

seq1  AGGTTTGTGATGAATTC  1067
      |||||||||||||||||
seq2  AGGTTTGTGATGAATTC  1057


| Home | SequenceCutter | Blast | Download |