BAC Information

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BAC

Clone NameB6Ng01-213H04
Chromosome8 (Build37)
Map Location 76,856,996 - 76,914,204
singlet/doubletdoublet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213H04.bB6Ng01-213H04.g
ACCGA030976GA030977
length1,133976
definitionB6Ng01-213H04.b B6Ng01-213H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,856,996 - 76,858,120)(76,913,446 - 76,914,204)
sequence
gaattctgacatcataatgttctactatgtgatcatgatcatccattgtc
caaaaaatgctgaaatatgatatcacaatgctcaatgagacatgtcaatg
gtccactgtgctatcacaatagtgttaattatattatcaagaaggagcat
tgtgccattgtgccattataatgctcaactgtgccatcacaatgtgcctt
agttatggtttctattactgtgaaaagataccatcaccatggcaactctt
ataaaggaaaacatttaattggagactacttaccgctgagagccatcatt
atagtccattattgtcatgtcaggaaacaatgcagcatacaggcagacat
gatgaagaggtagctgagagttctatgcatggaccagtaaagatcaggaa
gagagggacattgggcaagtcttgaatatttgaaacccaaagttcattcc
ctgtgacacactttcttcaacaaggcttacctctttttttttccattttt
tattaggtatttagctcatttacatttccaatgctataccaaaagtcccc
catacccacccacccccactcccctacccacccactccccctttttggcc
ctggtgttcccctgtactggggcatataaagtttgcaagtccaatgggcc
tctctttccagtgatggccgattaggccatctttgcaccactccctgtga
acctattggggcaattttcattcaaatcatcacattcactaaacctagga
ctttggacaccatgaccaagacaaatcttataaagaacaacacttaattg
aggctggattacaggttcaatccattatcatcaaagcaagaaatatgaca
actttcctggggaagcaaaacaccttcatccaaaggaagccaggagcaga
ttggcttccatatggctagggaggagggtcttcaaagccctaaccctctg
actgatacacttttctccacaagacaccacttctttaaacaaggccattg
ctttcctaatagtcccttggtcaagcttataacctgtcacaattctactc
cctgatcccttaggccttgtcaaacacatgagtttatggggaccatacct
aaccatgagcacaatacaaaatatacttagtct

gaattccttggtctttgtattccatacttcctgaataacaatccaagtat
ggatttgccttccctgctcaaacttctgtgttagtagcaacattcatgct
ataaaaatcaagaaatgtttaaagtattattattatttttttaccataac
atctatcaccagtttatatctgactttggaactaatcgtatagcaaagaa
aatgaagtcttagtgttcattttacatttcacttattcattcatttaggt
agtatgtgaatctgtatgtgtgccacatctctcattctaccataggaacc
tggggattgaactcaggtcttaagacttggcagcaagcaccagctctatc
tttgcttattttgttggttttgacacgggttcccttgcatcccatgctgt
ccctaaattccatggaagtacaacaaaataactgagagaaacaaccaaga
gacagaaggacttattttggctcacaggttcagagatcactgtagagaga
ctctcttgtgtactgtacgcatcacatgtcaacaaaaagctgatggtata
ttagctgaggcaggaaaaaggaagtgggagttccagtaggaagaaactct
cagagtcaggcatggaaatagatttgccccaaactctgaggagacatata
aatgaaaatgagaagaggtaaccagccatgtgacactcatagaatagaat
aaacaggttaattaagttatgagctagtcagagaacaaaccaaagcttgc
ggcctagttattaattcataaatagtaagtctcagagttgtcattttggg
acatgggtcatgggtggaaaaagttacagataacagcttatgagtatcat
gactctaggccctaggtgcagaacatcataacagggtaaaaacataaaat
agaggaggtttgtcacttcatcatttccaggaagcaaaaagaattagaca
caaacaagccaggggactggattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_76856996_76858120
seq2: B6Ng01-213H04.b_45_1177

seq1  GAATTCTGACATCATAATGTTCTACTATGTGATCATGATCATCCATTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACATCATAATGTTCTACTATGTGATCATGATCATCCATTGTC  50

seq1  CAAAAAATGCTGAAATATGATATCACAATGCTCAATGAGACATGTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATGCTGAAATATGATATCACAATGCTCAATGAGACATGTCAATG  100

seq1  GTCCACTGTGCTATCACAATAGTGTTAATTATATTATCAAGAAGGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTGTGCTATCACAATAGTGTTAATTATATTATCAAGAAGGAGCAT  150

seq1  TGTGCCATTGTGCCATTATAATGCTCAACTGTGCCATCACAATGTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATTGTGCCATTATAATGCTCAACTGTGCCATCACAATGTGCCTT  200

seq1  AGTTATGGTTTCTATTACTGTGAAAAGATACCATCACCATGGCAACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGTTTCTATTACTGTGAAAAGATACCATCACCATGGCAACTCTT  250

seq1  ATAAAGGAAAACATTTAATTGGAGACTACTTACCGCTGAGAGCCATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAAAACATTTAATTGGAGACTACTTACCGCTGAGAGCCATCATT  300

seq1  ATAGTCCATTATTGTCATGTCAGGAAACAATGCAGCATACAGGCAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCATTATTGTCATGTCAGGAAACAATGCAGCATACAGGCAGACAT  350

seq1  GATGAAGAGGTAGCTGAGAGTTCTATGCATGGACCAGTAAAGATCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGGTAGCTGAGAGTTCTATGCATGGACCAGTAAAGATCAGGAA  400

seq1  GAGAGGGACATTGGGCAAGTCTTGAATATTTGAAACCCAAAGTTCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGACATTGGGCAAGTCTTGAATATTTGAAACCCAAAGTTCATTCC  450

seq1  CTGTGACACACTTTCTTCAACAAGGCTTACCTCTTTTTTTTTCCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACACACTTTCTTCAACAAGGCTTACCTCTTTTTTTTTCCATTTTT  500

seq1  TATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  550

seq1  CATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCC  600

seq1  CTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC  650

seq1  TCTCTTTCCAGTGATGGCCGATTAGGCCATCTTTGCACCACTCCCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCAGTGATGGCCGATTAGGCCATCTTTGCACCACTCCCTGTGA  700

seq1  ACCTATTGGGGCAATTTTCATTCAAATCATCACATTCACTAAACCTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGGGGCAATTTTCATTCAAATCATCACATTCACTAAACCTAGGA  750

seq1  C-TTGGACACCATGACCAAGACAAATCTTATAAAGAACAACACTTAATTG  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACACCATGACCAAGACAAATCTTATAAAGAACAACACTTAATTG  800

seq1  AGGCTGGATTACAGGTTCAATCCATTATCATCAAAGCAAGAAATATGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGATTACAGGTTCAATCCATTATCATCAAAGCAAGAAATATGACA  850

seq1  AC-TTCCT-GGGAAGCAAAACACCTTCATCCAAAGGAAGCCAGGAGCAGA  897
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTGGGGAAGCAAAACACCTTCATCCAAAGGAAGCCAGGAGCAGA  900

seq1  TTGGCTCCCATATGGCTA-GGAGGAGGGTC-TCAAAG-CCTAA-CCTCTG  943
      |||||| ||||||||||| ||||||||||| |||||| ||||| ||||||
seq2  TTGGCTTCCATATGGCTAGGGAGGAGGGTCTTCAAAGCCCTAACCCTCTG  950

seq1  ACTGATACAC-TTTCTCCAACAAGACCACACCTCCTTAAACAAGGCCA-T  991
      |||||||||| ||||||| |||||||  ||| || ||||||||||||| |
seq2  ACTGATACACTTTTCTCC-ACAAGACACCACTTCTTTAAACAAGGCCATT  999

seq1  GC-TTCCTAATAGTCCCTGGGTCAAGCTTATAAAACCTGTCAC-ATTCTA  1039
      || ||||||||||||||| ||||||||||||  |||||||||| ||||||
seq2  GCTTTCCTAATAGTCCCTTGGTCAAGCTTAT--AACCTGTCACAATTCTA  1047

seq1  CTCCCTGGTCCCCTTAGGCTTGTTCAAACACATGAGTTTATGGGGACCAT  1089
      ||||||| | ||||||||| |  |||||||||||||||||||||||||||
seq2  CTCCCTGAT-CCCTTAGGCCTTGTCAAACACATGAGTTTATGGGGACCAT  1096

seq1  ACCTAAACAT-AGCACAATACAAAATACACTTAGTCT  1125
      |||||| ||| |||||||||||||||| |||||||||
seq2  ACCTAACCATGAGCACAATACAAAATATACTTAGTCT  1133


seq1: chr8_76913446_76914204
seq2: B6Ng01-213H04.g_67_825 (reverse)

seq1  AACTAGGCCGCAAGCTTTGGTTTGTTCTCTGACTAGCTCATAACTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCCGCAAGCTTTGGTTTGTTCTCTGACTAGCTCATAACTTAATT  50

seq1  AACCTGTTTATTCTATTCTATGAGTGTCACATGGCTGGTTACCTCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTTTATTCTATTCTATGAGTGTCACATGGCTGGTTACCTCTTCTC  100

seq1  ATTTTCATTTATATGTCTCCTCAGAGTTTGGGGCAAATCTATTTCCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTATATGTCTCCTCAGAGTTTGGGGCAAATCTATTTCCATGC  150

seq1  CTGACTCTGAGAGTTTCTTCCTACTGGAACTCCCACTTCCTTTTTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGAGAGTTTCTTCCTACTGGAACTCCCACTTCCTTTTTCCTGC  200

seq1  CTCAGCTAATATACCATCAGCTTTTTGTTGACATGTGATGCGTACAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTAATATACCATCAGCTTTTTGTTGACATGTGATGCGTACAGTAC  250

seq1  ACAAGAGAGTCTCTCTACAGTGATCTCTGAACCTGTGAGCCAAAATAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGTCTCTCTACAGTGATCTCTGAACCTGTGAGCCAAAATAAGT  300

seq1  CCTTCTGTCTCTTGGTTGTTTCTCTCAGTTATTTTGTTGTACTTCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCTCTTGGTTGTTTCTCTCAGTTATTTTGTTGTACTTCCATGG  350

seq1  AATTTAGGGACAGCATGGGATGCAAGGGAACCCGTGTCAAAACCAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGGACAGCATGGGATGCAAGGGAACCCGTGTCAAAACCAACAAA  400

seq1  ATAAGCAAAGATAGAGCTGGTGCTTGCTGCCAAGTCTTAAGACCTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAGATAGAGCTGGTGCTTGCTGCCAAGTCTTAAGACCTGAGTT  450

seq1  CAATCCCCAGGTTCCTATGGTAGAATGAGAGATGTGGCACACATACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCAGGTTCCTATGGTAGAATGAGAGATGTGGCACACATACAGAT  500

seq1  TCACATACTACCTAAATGAATGAATAAGTGAAATGTAAAATGAACACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTACCTAAATGAATGAATAAGTGAAATGTAAAATGAACACTAA  550

seq1  GACTTCATTTTCTTTGCTATACGATTAGTTCCAAAGTCAGATATAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTTTCTTTGCTATACGATTAGTTCCAAAGTCAGATATAAACTG  600

seq1  GTGATAGATGTTATGGTAAAAAAATAATAATAATACTTTAAACATTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGATGTTATGGTAAAAAAATAATAATAATACTTTAAACATTTCTT  650

seq1  GATTTTTATAGCATGAATGTTGCTACTAACACAGAAGTTTGAGCAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATAGCATGAATGTTGCTACTAACACAGAAGTTTGAGCAGGGAA  700

seq1  GGCAAATCCATACTTGGATTGTTATTCAGGAAGTATGGAATACAAAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATCCATACTTGGATTGTTATTCAGGAAGTATGGAATACAAAGACC  750

seq1  AAGGAATTC  759
      |||||||||
seq2  AAGGAATTC  759


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