BAC Information

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BAC

Clone NameB6Ng01-215A05
Chromosome8 (Build37)
Map Location 107,748,287 - 107,749,379
singlet/doubletsinglet
Overlap geneD230025D16Rik
Upstream geneTk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb
Downstream geneC76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215A05.bB6Ng01-215A05.g
ACCGA032105GA032106
length8571,089
definitionB6Ng01-215A05.b B6Ng01-215A05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacacccctaagccccgtaccccataaaagccaaagggctttcg
agcctcgtggccggcatctgttatctcctgtgtgggattcatgccggtcc
ggagctccgtaattaaacgtcctcatgtaattacagcgagtgggtcctcg
tgtttctttgggtgctctcacactcccgagactagagtgggggtccccga
aagggggtcttacagcgcatgcctgaaatctcatcactcaggaggcagag
gcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttcc
aggacagccagggctatacagagaaactctgtctcaaaaaaaccaaaaaa
ccaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgttaaacaaaatcaagg
ggtagacatccagcagataaaattttacccatttttcttttaaacatgaa
acacagaacaacaatcactcaaaaatgaaacaaaaacagacataacagac
ataaattgatgcacatgaacagattggtgcaccaatgacagacaattgac
agagagggaagagaacttgatgtcccaaagggacctagatataaccttgc
cacaccctccaatgaagtctgcttgaccggctgaaaagcctagaagccac
tcaggaggcaaagagtttcacggaaactcatctcctggagtttttggcat
tctcattaacccatatactcataccctattcccatgttagtcctgtgaat
ggatccacgtgctctcttttagtattatttattataagtgctttttaaga
ttaaattcctgatatagttaagttcttccccacccagtgtttccaagggt
tccagaa
gaattcccattgctcgttccccagagagcgttcaggcaccacctccaggt
ccagcattgggtcggttcgctgggccgggcggcctccctgcggcagcgca
gacaggacccggcctgaggagagcacgcagctgctgactggtcgctctcg
ccagcccgcggacgtccggctctccactcggttccgggcggcgacggcag
cacgaacacaacaacacacttcacctcccttcaacctcccgggcagcagc
cccggcaggagaggctgtagcaacagcagcgcccagagcaactgcagcaa
aagtggcgtgccgggccgtaaagcgtggcaaaggcggggctaaatcatga
aggcggggcttgaggcggagtcgcgcacgcgcaaactctggatcagaggc
cagacccgcgcgggtagagctggagggaagagcagctgctttagaactta
ggggccacattccagaggtcctgaaactgcacagcgcaccatatatgcct
acgcaagaaaaggcacaaggcgggaaacatgtcacacaaaaataaagtct
tccgtctgcacacttgtcccactaatctgcactaggaacaaaacggacag
gaaggacccagtcccagagactcacggccccgcggaccattatcaagctt
gtcacgtactgacgctggctgccactgcctaaattgttcagaaacctact
ctccttggacccagtggtctctgagcagggtccacctcagagtcgaggat
gtatgagtccgttggcaagggttagagcgagaggatttgagttagaaggc
tgaagagttccgggccaggtctcatttccagaaatgctcaacctagggaa
tactttctaagcacagaggctgcctcctgcagctccgcctggagtcacca
ttgctgcttgcccaatgctttatgggtagtgactaaagctcttaagtgtt
ctgtgcctccgtttccagtgagtagaagaggggctccctctagttattca
gccagaatttcgcttgctgctctaggcaccttaaataaagcagctgaagc
cttctttgatgacaggacctcacaccctcaggtctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107748287_107749379
seq2: B6Ng01-215A05.g_66_1154 (reverse)

seq1  AATGAGA-CTGAGGGTGTGAGGTCTTGTCATCAAAAGAGGCCTCAGCTGC  49
      ||||||| |||||||||||||||| ||||||||||  |||| ||||||||
seq2  AATGAGACCTGAGGGTGTGAGGTCCTGTCATCAAAGAAGGCTTCAGCTGC  50

seq1  CTTTTAATTTTAGGGTGCCCTAGAGCAAGCAAGCCGAAAATTCTGGCTGA  99
        ||||  |||| |||| |||||||| |||||||   |||||||||||||
seq2  --TTTA--TTTAAGGTG-CCTAGAGC-AGCAAGC--GAAATTCTGGCTGA  92

seq1  ATAACTAGA-GGAGCCCCTCTTCTACTCACTGGAAACGGAGGCACAGAAC  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGAGGGAGCCCCTCTTCTACTCACTGGAAACGGAGGCACAGAAC  142

seq1  ACTTAAGAGCTTTAGTCACTA-CCATAAAGCATT-GGCAAGCAGCAATGG  196
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  ACTTAAGAGCTTTAGTCACTACCCATAAAGCATTGGGCAAGCAGCAATGG  192

seq1  TGACTCCAGGCGGAGCTGCAGGAGGCAGCCTCTGTGCTTAGAAAGTATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAGGCGGAGCTGCAGGAGGCAGCCTCTGTGCTTAGAAAGTATTC  242

seq1  CCTAGGTTGAGCATTTCTGGAAATGAGACCTGGCCCGGAACTCTTCAGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTTGAGCATTTCTGGAAATGAGACCTGGCCCGGAACTCTTCAGCC  292

seq1  TTCTAACTCAAATCCTCTCGCTCTAACCCTTGCCAACGGACTCATACATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTCAAATCCTCTCGCTCTAACCCTTGCCAACGGACTCATACATC  342

seq1  CTCGACTCTGAGGTGGACCCTGCTCAGAGACCACTGGGTCCAAGGAGAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTCTGAGGTGGACCCTGCTCAGAGACCACTGGGTCCAAGGAGAGT  392

seq1  AGGTTTCTGAACAATTTAGGCAGTGGCAGCCAGCGTCAGTACGTGACAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGAACAATTTAGGCAGTGGCAGCCAGCGTCAGTACGTGACAAG  442

seq1  CTTGATAATGGTCCGCGGGGCCGTGAGTCTCTGGGACTGGGTCCTTCCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAATGGTCCGCGGGGCCGTGAGTCTCTGGGACTGGGTCCTTCCTG  492

seq1  TCCGTTTTGTTCCTAGTGCAGATTAGTGGGACAAGTGTGCAGACGGAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTTGTTCCTAGTGCAGATTAGTGGGACAAGTGTGCAGACGGAAGA  542

seq1  CTTTATTTTTGTGTGACATGTTTCCCGCCTTGTGCCTTTTCTTGCGTAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTTGTGTGACATGTTTCCCGCCTTGTGCCTTTTCTTGCGTAGG  592

seq1  CATATATGGTGCGCTGTGCAGTTTCAGGACCTCTGGAATGTGGCCCCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGGTGCGCTGTGCAGTTTCAGGACCTCTGGAATGTGGCCCCTAA  642

seq1  GTTCTAAAGCAGCTGCTCTTCCCTCCAGCTCTACCCGCGCGGGTCTGGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAAGCAGCTGCTCTTCCCTCCAGCTCTACCCGCGCGGGTCTGGCC  692

seq1  TCTGATCCAGAGTTTGCGCGTGCGCGACTCCGCCTCAAGCCCCGCCTTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCAGAGTTTGCGCGTGCGCGACTCCGCCTCAAGCCCCGCCTTCA  742

seq1  TGATTTAGCCCCGCCTTTGCCACGCTTTACGGCCCGGCACGCCACTTTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGCCCCGCCTTTGCCACGCTTTACGGCCCGGCACGCCACTTTTG  792

seq1  CTGCAGTTGCTCTGGGCGCTGCTGTTGCTACAGCCTCTCCTGCCGGGGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTGCTCTGGGCGCTGCTGTTGCTACAGCCTCTCCTGCCGGGGCT  842

seq1  GCTGCCCGGGAGGTTGAAGGGAGGTGAAGTGTGTTGTTGTGTTCGTGCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCGGGAGGTTGAAGGGAGGTGAAGTGTGTTGTTGTGTTCGTGCTG  892

seq1  CCGTCGCCGCCCGGAACCGAGTGGAGAGCCGGACGTCCGCGGGCTGGCGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCGCCGCCCGGAACCGAGTGGAGAGCCGGACGTCCGCGGGCTGGCGA  942

seq1  GAGCGACCAGTCAGCAGCTGCGTGCTCTCCTCAGGCCGGGTCCTGTCTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGACCAGTCAGCAGCTGCGTGCTCTCCTCAGGCCGGGTCCTGTCTGC  992

seq1  GCTGCCGCAGGGAGGCCGCCCGGCCCAGCGAACCGACCCAATGCTGGACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGCAGGGAGGCCGCCCGGCCCAGCGAACCGACCCAATGCTGGACC  1042

seq1  TGGAGGTGGTGCCTGAACGCTCTCTGGGGAACGAGCAATGGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGTGCCTGAACGCTCTCTGGGGAACGAGCAATGGGAATTC  1089