BAC Information

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BAC

Clone NameB6Ng01-216L20
Chromosome8 (Build37)
Map Location 98,113,069 - 98,315,058
singlet/doubletdoublet
Overlap geneLOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1
Upstream gene2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088
Downstream geneLOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216L20.bB6Ng01-216L20.g
ACCGA033349GA033350
length4661,134
definitionB6Ng01-216L20.b B6Ng01-216L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,314,587 - 98,315,058)(98,113,069 - 98,114,199)
sequence
cagaattaaaggtgtatgccaccatacttggcacagggtaactgagtttt
tcatgttcatgttttttcaggttttttagggctaagaagatgacttggtg
ggtaaagtgctgccaagtaaccatgatgacctgagtatggctctccaagc
taggcatttgatctgccatcccattagggcttcctggtccagaaatttta
gcataattccagttccaggtttagttgagagagtccagtctctcaaaagg
ggggaaatggaggaagatatcttgacttcactcctgacttatacacatcc
acacaaaacatttctccttggtaatataatagaatatggagaacaatagt
agataggatctgagagattagttacaagtgtatatcatagtaattctgtt
gagagacaaaatggtctttagattatcaaatttaaagatggtaggaggag
gatggtagggagggga
gaattccgtcctgaaagagagcctccatcctctctcttgctgcatttgtt
acttcttgtctctgtgatggaagacccgaaagacatttcttgagggagga
aggattctggtgtgtgggtcaaggatgtggcacaatccaacatggctgtg
aagtcggaatggctcaggctggacagcgggagctgatggctctggttctg
acacctggtcagtgaataatcacagagcttccgagggaagcagggcctgg
ctataccccacagctgcctcttgcatccatccactgcctccggagaggcc
cagcctccaaaaggtccataatctacccaaacagcaccaccagcagggcg
cgcgaggttctgcagaacgtttcacatgtaagcaaaaacacttgtccgtg
gacatttgaattgtcaccaatttaaaaaatatgaatcagcaattctacag
ccaatatggtcccacaagtctcggtgggatttctatgttccatgtgatgg
cagtgtctctctggagagacactatcccaagtctgtatcgagagtctgtc
ttcctaggcggagttcttcccagacataaaccaacttgtgttatacttct
caatggtaacaaccaaagccctgaaggaaacagaaaaatgcctaaccgtg
ttctcccggggctgtgagctgtcctacctaccaccgcctcggcttccccg
ggtctctgggactggccattgttcagttccacttgggacctccgtgtccc
cagaggaggtttagagttcccttaagtgagaggctcatggcatctgtcca
ccagctggtgctttacaaggacaaaacttgctaccagccccccaccccgc
ccccaaaggatcccttttgctaattaagaagctggttttgaagctaaacc
tttcatattaaagaagacagcgtcgaagaccatagaccctgtaggaacct
tgcagaatgttacacagagagagaatctgcagccacagaacgggatgcag
tcacacctgggacctccgagaaaccattccattgtggagaacaagccaag
ccaaaaaaacaggagtagaagttagactgatttttttcccccctaaccca
ttatgaataggattcacttttggaaggtctgacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98314587_98315058
seq2: B6Ng01-216L20.b_47_518 (reverse)

seq1  TCCCCTCCCTACCATCCTCCTCCTACCATCTTTAAATTTGATAATCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCTACCATCCTCCTCCTACCATCTTTAAATTTGATAATCTAAA  50

seq1  GACCATTTTGTCTCTCAACAGAATTACTATGATATACACTTGTAACTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTTGTCTCTCAACAGAATTACTATGATATACACTTGTAACTAAT  100

seq1  CTCTCAGATCCTATCTACTATTGTTCTCCATATTCTATTATATTACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGATCCTATCTACTATTGTTCTCCATATTCTATTATATTACCAAG  150

seq1  GAGAAATGTTTTGTGTGGATGTGTATAAGTCAGGAGTGAAGTCAAGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTTTTGTGTGGATGTGTATAAGTCAGGAGTGAAGTCAAGATAT  200

seq1  CTTCCTCCATTTCCCCCCTTTTGAGAGACTGGACTCTCTCAACTAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCATTTCCCCCCTTTTGAGAGACTGGACTCTCTCAACTAAACCT  250

seq1  GGAACTGGAATTATGCTAAAATTTCTGGACCAGGAAGCCCTAATGGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAATTATGCTAAAATTTCTGGACCAGGAAGCCCTAATGGGATG  300

seq1  GCAGATCAAATGCCTAGCTTGGAGAGCCATACTCAGGTCATCATGGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAAATGCCTAGCTTGGAGAGCCATACTCAGGTCATCATGGTTAC  350

seq1  TTGGCAGCACTTTACCCACCAAGTCATCTTCTTAGCCCTAAAAAACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCACTTTACCCACCAAGTCATCTTCTTAGCCCTAAAAAACCTGA  400

seq1  AAAAACATGAACATGAAAAACTCAGTTACCCTGTGCCAAGTATGGTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGAACATGAAAAACTCAGTTACCCTGTGCCAAGTATGGTGGCA  450

seq1  TACACCTTTAATTCTGGAATTC  472
      ||||||||||||||||||||||
seq2  TACACCTTTAATTCTGGAATTC  472

seq1: chr8_98113069_98114199
seq2: B6Ng01-216L20.g_68_1201

seq1  GAATTCCGTCCTGAAAGAGAGCCTCCATCCTCTCTCTTGCTGCATTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTCCTGAAAGAGAGCCTCCATCCTCTCTCTTGCTGCATTTGTT  50

seq1  ACTTCTTGTCTCTGTGATGGAAGACCCGAAAGACATTTCTTGAGGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTCTCTGTGATGGAAGACCCGAAAGACATTTCTTGAGGGAGGA  100

seq1  AGGATTCTGGTGTGTGGGTCAAGGATGTGGCACAATCCAACATGGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTGGTGTGTGGGTCAAGGATGTGGCACAATCCAACATGGCTGTG  150

seq1  AAGTCGGAATGGCTCAGGCTGGACAGCGGGAGCTGATGGCTCTGGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGAATGGCTCAGGCTGGACAGCGGGAGCTGATGGCTCTGGTTCTG  200

seq1  ACACCTGGTCAGTGAATAATCACAGAGCTTCCGAGGGAAGCAGGGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGTCAGTGAATAATCACAGAGCTTCCGAGGGAAGCAGGGCCTGG  250

seq1  CTATACCCCACAGCTGCCTCTTGCATCCATCCACTGCCTCCGGAGAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCCACAGCTGCCTCTTGCATCCATCCACTGCCTCCGGAGAGGCC  300

seq1  CAGCCTCCAAAAGGTCCATAATCTACCCAAACAGCACCACCAGCAGGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCAAAAGGTCCATAATCTACCCAAACAGCACCACCAGCAGGGCG  350

seq1  CGCGAGGTTCTGCAGAACGTTTCACATGTAAGCAAAAACACTTGTCCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGTTCTGCAGAACGTTTCACATGTAAGCAAAAACACTTGTCCGTG  400

seq1  GACATTTGAATTGTCACCAATTTAAAAAATATGAATCAGCAATTCTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGAATTGTCACCAATTTAAAAAATATGAATCAGCAATTCTACAG  450

seq1  CCAATATGGTCCCACAAGTCTCGGTGGGATTTCTATGTTCCATGTGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATGGTCCCACAAGTCTCGGTGGGATTTCTATGTTCCATGTGATGG  500

seq1  CAGTGTCTCTCTGGAGAGACACTATCCCAAGTCTGTATCGAGAGTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTCTGGAGAGACACTATCCCAAGTCTGTATCGAGAGTCTGTC  550

seq1  TTCCTAGGCGGAGTTCTTCCCAGACATAAACCAACTTGTGTTATACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGCGGAGTTCTTCCCAGACATAAACCAACTTGTGTTATACTTCT  600

seq1  CAATGGTAACAACCAAAGCCCTGAAGGAAACAGAAAAATGCCTAACCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTAACAACCAAAGCCCTGAAGGAAACAGAAAAATGCCTAACCGTG  650

seq1  TTCTCCCGGGGCTGTGAGCTGTCCTACCTACCACCGCCTCGGCTTCCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCGGGGCTGTGAGCTGTCCTACCTACCACCGCCTCGGCTTCCCCG  700

seq1  GGTCTCTGGGACTGGCCATTGTTCAGTTCCACTTGGGACCTCCGTGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGGGACTGGCCATTGTTCAGTTCCACTTGGGACCTCCGTGTCCC  750

seq1  CAGAGGAGGTTTAGAGTTCCCTTAAGTGAGAGGCTCATGGCATCTGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGTTTAGAGTTCCCTTAAGTGAGAGGCTCATGGCATCTGTCCA  800

seq1  CCAGCTGGTGCTTTACAAAGGACAAAACTTGCTACCAGCCCCCCACCCCG  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGCTGGTGCTTTAC-AAGGACAAAACTTGCTACCAGCCCCCCACCCCG  849

seq1  CCCCCAAAGGATCCC-TTTGCTAATTAAGAAGCTGGTTTTGAAGCTAAAC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAGGATCCCTTTTGCTAATTAAGAAGCTGGTTTTGAAGCTAAAC  899

seq1  CTTTCATATTAAAGAAGACAGCGTCGAAGACCATAGACCCTGTAGGAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATATTAAAGAAGACAGCGTCGAAGACCATAGACCCTGTAGGAACC  949

seq1  TTGCAGAATGTTACACAGAGAGAGAATCTGCAGCCACAGAACGGGATGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAATGTTACACAGAGAGAGAATCTGCAGCCACAGAACGGGATGCA  999

seq1  GTTCAACACCT-GGACCTCCGAGAAACCA-TCCATTGTGGAG-ACAAG-C  1045
      ||   |||||| ||||||||||||||||| |||||||||||| ||||| |
seq2  GT--CACACCTGGGACCTCCGAGAAACCATTCCATTGTGGAGAACAAGCC  1047

seq1  AAGCC-AAAAAACAGGAAGTAGGAAGTAGAACTGA-TTTTTTCCCCCTAA  1093
      ||||| |||||||||| |||| |||||   ||||| |||||||||||  |
seq2  AAGCCAAAAAAACAGG-AGTA-GAAGTTAGACTGATTTTTTTCCCCCCTA  1095

seq1  ACACATTATGAATAG--ATCACTTTAGAAAATGTCTGACG  1131
      || ||||||||||||   ||||||| |  || ||||||||
seq2  ACCCATTATGAATAGGATTCACTTTTG-GAAGGTCTGACG  1134