BAC Information

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BAC

Clone NameB6Ng01-216L21
Chromosome8 (Build37)
Map Location 69,189,990 - 69,370,310
singlet/doubletdoublet
Overlap geneNpy5r, Npy1r, BC053440
Upstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216L21.bB6Ng01-216L21.g
ACCGA033351GA033352
length273811
definitionB6Ng01-216L21.b B6Ng01-216L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,189,990 - 69,190,263)(69,369,504 - 69,370,310)
sequence
tccaaaacaaacttgactttatgataccaaaacaggcatagcaaaagctc
tggaaaacaagacagcaaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtaactgcaaacatccaaagtaattttg
aaaaatttacattttgaattaattttaaaaattaatatacattctgataa
tcaaggggattgtcataaaagattactactatatattactgtaacaaaat
ccaaaattcttcaaaacctttaa
gaattctgtcttttacgctgtgatgacagtgcatcttggcaccactgaga
gctggaagactggttaaaggtatggccatgtggttgagctgatggtgaaa
atcccaactgatctgcatgtagagaaccaaatttcccagcctatgacatc
tgtctgaaaacgttgttcatctaccactgcttgccgctgatgagcttctg
gagaagaaaaggacctctggaccatctgtgctgtcggagtcacgtcactc
actgtcctttcatagctgttaggagatgtggaggtagggcttaaacttct
aacatgatgctggggatataacatactggcatcctgagaggcatgactac
ttcctgatctaaacggaattgtgataggcctcccgaaaagtttgattcca
ttgagaagattcatggcgtagggaacagacactttgtgtttgaaattcat
gaatgcaaactgtttcagtatgctatttttatcttttgggattttcacct
ttattactggcccagcctggtggaacagctcaaagaggagctcctctgtc
acctttgtctccaggttactcacgaacagagtgcaaccactgccctcatc
tctgctatggaggccattcttttttttttttttttccttttcaatttttt
attaggtatttagctcatttacatttccaatgctataccaaaagtccccc
atactcacccacccccactcttctacccacccactcccccttttggccct
gggcgttccccttgtactgggggcatataaaagtttgtatgaccaatggg
tcctctcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_69189990_69190263
seq2: B6Ng01-216L21.b_54_326

seq1  TCCAAAACAAACTTGACTTTATGATACCAAAACAGGCATAGCAAAAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACAAACTTGACTTTATGATACCAAAACAGGCATAGCAAAAGCTC  50

seq1  TGGAAAACAAGACAGCAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACAAGACAGCAAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGTGTGTGTGTGTAACTGCAAACATCCAAAGTAATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTAACTGCAAACATCCAAAGTAATTTTG  150

seq1  AAAAATTTACATTTTGAATTAATTTTAAAAATTAATATACAATTCTGATA  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAATTTACATTTTGAATTAATTTTAAAAATTAATATAC-ATTCTGATA  199

seq1  ATCAAGGGGATTGTCATAAAAGATTACTACTATATATTACTGTAACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCAAGGGGATTGTCATAAAAGATTACTACTATATATTACTGTAACAAAA  249

seq1  TCCAAAATTCAGCAAAACCTTTAA  274
      ||||||||||  ||||||||||||
seq2  TCCAAAATTCTTCAAAACCTTTAA  273

seq1: chr8_69369504_69370310
seq2: B6Ng01-216L21.g_70_880 (reverse)

seq1  GGAAGAGAGG-CCCATTGGACTTACAAAC-TTTATATG-CCCCAGTAC-A  46
      |||||||||| |||||||| | ||||||| |||||||| ||||||||| |
seq2  GGAAGAGAGGACCCATTGGTCATACAAACTTTTATATGCCCCCAGTACAA  50

seq1  GGGGAACG-CCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGAGAGTGGGG  95
      |||||||| |||||||| |||||||||||||||||||||| |||||||||
seq2  GGGGAACGCCCAGGGCC-AAAAGGGGGAGTGGGTGGGTAGAAGAGTGGGG  99

seq1  GTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGC  145
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGAGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGC  149

seq1  TAAATACCTAATAAAAAATTGAAAAGGAAAAAAAAAAAAAAAAGAATGGC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTAATAAAAAATTGAAAAGGAAAAAAAAAAAAAAAAGAATGGC  199

seq1  CTCCATAGCAGAGATGAGGGCAGTGGTTGCACTCTGTTCGTGAGTAACCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGCAGAGATGAGGGCAGTGGTTGCACTCTGTTCGTGAGTAACCT  249

seq1  GGAGACAAAGGTGACAGAGGAGCTCCTCTTTGAGCTGTTCCACCAGGCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAAGGTGACAGAGGAGCTCCTCTTTGAGCTGTTCCACCAGGCTG  299

seq1  GGCCAGTAATAAAGGTGAAAATCCCAAAAGATAAAAATAGCATACTGAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTAATAAAGGTGAAAATCCCAAAAGATAAAAATAGCATACTGAAA  349

seq1  CAGTTTGCATTCATGAATTTCAAACACAAAGTGTCTGTTCCCTACGCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCATTCATGAATTTCAAACACAAAGTGTCTGTTCCCTACGCCAT  399

seq1  GAATCTTCTCAATGGAATCAAACTTTTCGGGAGGCCTATCACAATTCCGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCTCAATGGAATCAAACTTTTCGGGAGGCCTATCACAATTCCGT  449

seq1  TTAGATCAGGAAGTAGTCATGCCTCTCAGGATGCCAGTATGTTATATCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAGGAAGTAGTCATGCCTCTCAGGATGCCAGTATGTTATATCCC  499

seq1  CAGCATCATGTTAGAAGTTTAAGCCCTACCTCCACATCTCCTAACAGCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCATGTTAGAAGTTTAAGCCCTACCTCCACATCTCCTAACAGCTA  549

seq1  TGAAAGGACAGTGAGTGACGTGACTCCGACAGCACAGATGGTCCAGAGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGACAGTGAGTGACGTGACTCCGACAGCACAGATGGTCCAGAGGT  599

seq1  CCTTTTCTTCTCCAGAAGCTCATCAGCGGCAAGCAGTGGTAGATGAACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTCTCCAGAAGCTCATCAGCGGCAAGCAGTGGTAGATGAACAA  649

seq1  CGTTTTCAGACAGATGTCATAGGCTGGGAAATTTGGTTCTCTACATGCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCAGACAGATGTCATAGGCTGGGAAATTTGGTTCTCTACATGCAG  699

seq1  ATCAGTTGGGATTTTCACCATCAGCTCAACCACATGGCCATACCTTTAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGGGATTTTCACCATCAGCTCAACCACATGGCCATACCTTTAAC  749

seq1  CAGTCTTCCAGCTCTCAGTGGTGCCAAGATGCACTGTCATCACAGCGTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCAGCTCTCAGTGGTGCCAAGATGCACTGTCATCACAGCGTAA  799

seq1  AAGACAGAATTC  807
      ||||||||||||
seq2  AAGACAGAATTC  811