BAC Information

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BAC

Clone NameB6Ng01-217G21
Chromosome8 (Build37)
Map Location 5,910,903 - 5,998,957
singlet/doubletdoublet
Overlap geneLOC100040360
Upstream geneLOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217G21.bB6Ng01-217G21.g
ACCGA033844GA033845
length1,2341,172
definitionB6Ng01-217G21.b B6Ng01-217G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,910,903 - 5,912,141)(5,997,777 - 5,998,957)
sequence
gaattctttagtcaacggtcacttgggccgtaatggagactgaggcagcc
ttccctgaggactgaccatggacaatcataacatagcaaagcagcaactt
aaatatccagaagcaaccatgcagggaaaaatctaaatgttaccagggct
agcaggagataaagaaaaaaataattataggaggtcctgaaaattgggaa
tagataaagcatcatcacacttgacaatagactaattcttttttatggta
atttgcagcctgtgattttagtgaattttacctaatcgtcttgaggaatg
acatctcagcaaaagtcaaagtgtgactgtctacctatccttaaggaaaa
gcacacgctttctttactttttattggctatttgtattgtgaaaatgtat
gcctaatactagggtaacaaattctctccactctggaatttgttatcacc
cagataaaagctgaaataacaagttttaacaatttaaatagagtcagatt
ttactgtcagattcaatcagttcaattttgtgtttttgataaaatgtaaa
aatcaatttccatatttactacttatatgctagaagaaaattaagagatt
agaaaaggtttaattttgtgcttctcttaaggacattatttaaatgagga
aattctaccataaatctaatactaacaaaaatcttttaaaatccacaata
tttttcttacctatttttaacatgtagaaacagttaatttcagttaatat
tttgttgaattagtttcagcgataataaattagtgagaaacagtgtgaca
tataaaggggtttcaaggtatgagtgcaacgttatcctgaattttctctt
catgaaaaataattgtcaacactgtacaactggtattgaacttttcatta
agctataccagatttgaaaattaatcttctgaaccagagcactgaccaaa
gagaccaattcttaagttatatgaactttctttacttctaaacaaccaat
atagcacaaatagcacacacacgtaatttaatgcaagttcagagttgtta
cagattagacagtcttgattagaacagattaaacaagttctgacccacag
agcttttttggagtctctttgtttcttatcaatagacccactgaatctgt
tgacctttgttaatctcaggtagatggaatctgatccttaaagacacagt
gaccaattcaggcaaggtcccccttctcaattgc

gaattctatgactcttgaggtgataagaatagagaaagaaatgatgctca
acatggtgaaaactataaaacataaccatcagataaatgacgtccaaaaa
tcaatgtaaaggacactaggtacactcttggtgctgataaggaacaagaa
gcccacagaaaatgacacaacaagaatcttaacagatggtaagtcaactt
aatcaggcaaattaagggatcatatgttaaaaacaagagagtaggttagt
tgacatgcactgtaattacataggatatattgctttcaataaatgttaca
ggacagattaacgttaatcatgccaactacatttctaaatctgcttttca
gacataattaaaatcctaaattattactgctgcaaattaacaattttaat
gtagtgcagacattgtaatcatcagcatttagttcttttcaaatggtttg
tctaatgcaaatttaaacaatagtcacctaagtaagtacaagcgcgatca
gccttgcctgaacagtctgtgagagacagacagctccagtgtgtttcctc
aaagaacagtcagctcaaaagtgaatggtggagtctttaagggagcatcg
tgtagtctcattcaacacactgagaccttaactacagcttacagaatctt
caaacctacgaaaatgtaaaacaatggagtgtcccaaatgacctgcagag
tgctctgagcttcctgtgtacagtatgctcctctgtgtgccaaggaacac
agagatcatctcccagcctccagaatcccagctagcttctcaaaagggac
acgtaatctgacttaattctcatagtatgagaaatagcttttatttacat
catttattatagggaaattcattttaatacatgtatgtacaaaatttgat
caattctacttgaatcatgtcggcagggcagtgtacacttagaattttca
gaacatgctttgataagtgtcttcacattcagcgtccccctagccaccac
caaagtcaggggagagagatggttaataggacaagggagatgtagacctg
ctcagaatagtcttttggggtgctgtaactttcattaccagaactccagc
cagacagtcaaaacatcaaacacaagtcctagcagcagttccgttcatag
ctaacacctaacatgtaatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5910903_5912141
seq2: B6Ng01-217G21.b_47_1280

seq1  GAATTCTTTAGTCAACGGTCACTTGGGCCGTAATGGAGACTGAGGCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTCAACGGTCACTTGGGCCGTAATGGAGACTGAGGCAGCC  50

seq1  TTCCCTGAGGACTGACCATGGACAATCATAACATAGCAAAGCAGCAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAGGACTGACCATGGACAATCATAACATAGCAAAGCAGCAACTT  100

seq1  AAATATCCAGAAGCAACCATGCAGGGAAAAATCTAAATGTTACCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCAGAAGCAACCATGCAGGGAAAAATCTAAATGTTACCAGGGCT  150

seq1  AGCAGGAGATAAAGAAAAAAATAATTATAGGAGGTCCTGAAAATTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGATAAAGAAAAAAATAATTATAGGAGGTCCTGAAAATTGGGAA  200

seq1  TAGATAAAGCATCATCACACTTGACAATAGACTAATTCTTTTTTATGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAGCATCATCACACTTGACAATAGACTAATTCTTTTTTATGGTA  250

seq1  ATTTGCAGCCTGTGATTTTAGTGAATTTTACCTAATCGTCTTGAGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGCCTGTGATTTTAGTGAATTTTACCTAATCGTCTTGAGGAATG  300

seq1  ACATCTCAGCAAAAGTCAAAGTGTGACTGTCTACCTATCCTTAAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAGCAAAAGTCAAAGTGTGACTGTCTACCTATCCTTAAGGAAAA  350

seq1  GCACACGCTTTCTTTACTTTTTATTGGCTATTTGTATTGTGAAAATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCTTTCTTTACTTTTTATTGGCTATTTGTATTGTGAAAATGTAT  400

seq1  GCCTAATACTAGGGTAACAAATTCTCTCCACTCTGGAATTTGTTATCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATACTAGGGTAACAAATTCTCTCCACTCTGGAATTTGTTATCACC  450

seq1  CAGATAAAAGCTGAAATAACAAGTTTTAACAATTTAAATAGAGTCAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAGCTGAAATAACAAGTTTTAACAATTTAAATAGAGTCAGATT  500

seq1  TTACTGTCAGATTCAATCAGTTCAATTTTGTGTTTTTGATAAAATGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCAGATTCAATCAGTTCAATTTTGTGTTTTTGATAAAATGTAAA  550

seq1  AATCAATTTCCATATTTACTACTTATATGCTAGAAGAAAATTAAGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTTCCATATTTACTACTTATATGCTAGAAGAAAATTAAGAGATT  600

seq1  AGAAAAGGTTTAATTTTGTGCTTCTCTTAAGGACATTATTTAAATGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTTTAATTTTGTGCTTCTCTTAAGGACATTATTTAAATGAGGA  650

seq1  AATTCTACCATAAATCTAATACTAACAAAAATCTTTTAAAATCCACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACCATAAATCTAATACTAACAAAAATCTTTTAAAATCCACAATA  700

seq1  TTTTTCTTACCTATTTTTAACATGTAGAAACAGTTAATTTCAGTTAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTACCTATTTTTAACATGTAGAAACAGTTAATTTCAGTTAATAT  750

seq1  TTTGTTGAATTAGTTTCAGCGATAATAAATTAGTGAGAAACAGTGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAATTAGTTTCAGCGATAATAAATTAGTGAGAAACAGTGTGACA  800

seq1  TAT-AAGGGGTTTCAAGGTATGAGTGCAACGTTATCCTGAATTTTCTCTT  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGGGTTTCAAGGTATGAGTGCAACGTTATCCTGAATTTTCTCTT  850

seq1  CATGAAAAATAATTGTCAACACTGTACAACTGGTATTGAACTTTTCATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAATAATTGTCAACACTGTACAACTGGTATTGAACTTTTCATTA  900

seq1  AGCTATACCAGATTTGAAAATTAATCTTCTGAACCAAGAGCACTGACCAA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCTATACCAGATTTGAAAATTAATCTTCTGAACC-AGAGCACTGACCAA  949

seq1  AGAGACCAATTCTTAAGTTATATGAACTTTCTTTACTTCTAAACAAACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||  | 
seq2  AGAGACCAATTCTTAAGTTATATGAACTTTCTTTACTTCTAAACAA--CC  997

seq1  AATATAGCACAAATTAGCACACACACGTAAATTTAAATGCAAAGTTCAGA  1049
      ||||||||||||| ||||||||||||||||  || ||||| |||||||||
seq2  AATATAGCACAAA-TAGCACACACACGTAA--TTTAATGC-AAGTTCAGA  1043

seq1  GTTGTTACAGATTAGACAAGTC-TGATTAGAACAGATTAAACAAG-TCTG  1097
      ||||||||||||||||| |||| |||||||||||||||||||||| ||||
seq2  GTTGTTACAGATTAGAC-AGTCTTGATTAGAACAGATTAAACAAGTTCTG  1092

seq1  ACCCAACAGAGCTTTTT--GAGTCTCTT--GTTCTTATC-ATAGACCCAC  1142
      |||| ||||||||||||  |||||||||   |||||||| ||||||||||
seq2  ACCC-ACAGAGCTTTTTTGGAGTCTCTTTGTTTCTTATCAATAGACCCAC  1141

seq1  TGGATACCTG-TGA-CTTTG-TAATCTTCAGTAGTAGAAATCAGACCCTA  1189
      || ||  ||| ||| ||||| ||||||   ||||  | |||| || ||| 
seq2  TGAAT--CTGTTGACCTTTGTTAATCTCAGGTAGATGGAATCTGATCCTT  1189

seq1  GAGCACCAAGTGACCATATTCACAAGCAAAGGTTCCCCCCTTCTC-ATTG  1238
       |  ||  |||||||| ||||   ||  |||||  |||||||||| ||||
seq2  AAAGACACAGTGACCA-ATTC---AGGCAAGGT--CCCCCTTCTCAATTG  1233

seq1  C  1239
      |
seq2  C  1234


seq1: chr8_5997777_5998957
seq2: B6Ng01-217G21.g_66_1237 (reverse)

seq1  ATGATT-CATGTTAGGTGTTTGCCTATTGGACGGAACTGCTGCTATGATT  49
      |||||| ||||||||||||| | ||| || ||||||||||||||| || |
seq2  ATGATTACATGTTAGGTGTTAG-CTA-TGAACGGAACTGCTGCTAGGACT  48

seq1  TGTGTTTGATGTTTTTGACTGGTCT-GCTGGAGTCCTGGTAATGAAGTTT  98
      ||||||||||| |||||||| |||| |||||||| |||||||||||  ||
seq2  TGTGTTTGATG-TTTTGACT-GTCTGGCTGGAGTTCTGGTAATGAAAGTT  96

seq1  ACAACCACCCCAAAGAACTACTCCTGAGCAGGTCTACATCTCCCTTGTCC  148
      || | |||||||||  |||| | |||||||||||||||||||||||||||
seq2  AC-AGCACCCCAAAAGACTA-TTCTGAGCAGGTCTACATCTCCCTTGTCC  144

seq1  TATTAACCATCTCTCTCCCCTGACTTTGGTTGGTGGGCTAGGGGGACGCT  198
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TATTAACCATCTCTCTCCCCTGACTTTGG-TGGT-GGCTAGGGGGACGCT  192

seq1  GAATTGTTGAAGAACACTTATCAAAGCATGTTCTGAAAATTCTAAGTGTA  248
      ||||   ||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAT--GTGAAG-ACACTTATCAAAGCATGTTCTGAAAATTCTAAGTGTA  239

seq1  CACTGCCCTGCCGACATGATTCAAGTAGAATTGATCAAATTTTGTACATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTGCCGACATGATTCAAGTAGAATTGATCAAATTTTGTACATA  289

seq1  CATGTATTAAAATGAATTTCCCTATAATAAATGATGTAAATAAAAGCTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTAAAATGAATTTCCCTATAATAAATGATGTAAATAAAAGCTAT  339

seq1  TTCTCATACTATGAGAATTAAGTCAGATTACGTGTCCCTTTTGAGAAGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATACTATGAGAATTAAGTCAGATTACGTGTCCCTTTTGAGAAGCT  389

seq1  AGCTGGGATTCTGGAGGCTGGGAGATGATCTCTGTGTTCCTTGGCACACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGATTCTGGAGGCTGGGAGATGATCTCTGTGTTCCTTGGCACACA  439

seq1  GAGGAGCATACTGTACACAGGAAGCTCAGAGCACTCTGCAGGTCATTTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCATACTGTACACAGGAAGCTCAGAGCACTCTGCAGGTCATTTGG  489

seq1  GACACTCCATTGTTTTACATTTTCGTAGGTTTGAAGATTCTGTAAGCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCATTGTTTTACATTTTCGTAGGTTTGAAGATTCTGTAAGCTGT  539

seq1  AGTTAAGGTCTCAGTGTGTTGAATGAGACTACACGATGCTCCCTTAAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGTCTCAGTGTGTTGAATGAGACTACACGATGCTCCCTTAAAGA  589

seq1  CTCCACCATTCACTTTTGAGCTGACTGTTCTTTGAGGAAACACACTGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCATTCACTTTTGAGCTGACTGTTCTTTGAGGAAACACACTGGAG  639

seq1  CTGTCTGTCTCTCACAGACTGTTCAGGCAAGGCTGATCGCGCTTGTACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTCTCACAGACTGTTCAGGCAAGGCTGATCGCGCTTGTACTT  689

seq1  ACTTAGGTGACTATTGTTTAAATTTGCATTAGACAAACCATTTGAAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTGACTATTGTTTAAATTTGCATTAGACAAACCATTTGAAAAGA  739

seq1  ACTAAATGCTGATGATTACAATGTCTGCACTACATTAAAATTGTTAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGCTGATGATTACAATGTCTGCACTACATTAAAATTGTTAATTT  789

seq1  GCAGCAGTAATAATTTAGGATTTTAATTATGTCTGAAAAGCAGATTTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTAATAATTTAGGATTTTAATTATGTCTGAAAAGCAGATTTAGA  839

seq1  AATGTAGTTGGCATGATTAACGTTAATCTGTCCTGTAACATTTATTGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTTGGCATGATTAACGTTAATCTGTCCTGTAACATTTATTGAAA  889

seq1  GCAATATATCCTATGTAATTACAGTGCATGTCAACTAACCTACTCTCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATATCCTATGTAATTACAGTGCATGTCAACTAACCTACTCTCTTG  939

seq1  TTTTTAACATATGATCCCTTAATTTGCCTGATTAAGTTGACTTACCATCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACATATGATCCCTTAATTTGCCTGATTAAGTTGACTTACCATCT  989

seq1  GTTAAGATTCTTGTTGTGTCATTTTCTGTGGGCTTCTTGTTCCTTATCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATTCTTGTTGTGTCATTTTCTGTGGGCTTCTTGTTCCTTATCAG  1039

seq1  CACCAAGAGTGTACCTAGTGTCCTTTACATTGATTTTTGGACGTCATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGTGTACCTAGTGTCCTTTACATTGATTTTTGGACGTCATTTA  1089

seq1  TCTGATGGTTATGTTTTATAGTTTTCACCATGTTGAGCATCATTTCTTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTTATGTTTTATAGTTTTCACCATGTTGAGCATCATTTCTTTC  1139

seq1  TCTATTCTTATCACCTCAAGAGTCATAGAATTC  1181
      |||||||||||||||||||||||||||||||||
seq2  TCTATTCTTATCACCTCAAGAGTCATAGAATTC  1172


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