BAC Information

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BAC

Clone NameB6Ng01-220B17
Chromosome8 (Build37)
Map Location 61,676,704 - 61,858,258
singlet/doubletdoublet
Overlap geneLOC436042
Upstream gene4930431L04Rik, BC030500, LOC665116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B17.bB6Ng01-220B17.g
ACCGA035750GA035751
length1,1341,080
definitionB6Ng01-220B17.b B6Ng01-220B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,676,704 - 61,677,840)(61,857,186 - 61,858,258)
sequence
gaattctaactgtcaaaatgctgaaaattcagggtagaacagtaaggcaa
aaaggccaaagcattggtgtgaatgtgaggaagacatatccctaagcttg
attcatagggtttttatcatatttgaaaataattattggaggaaaaccat
attttgtttctgagagtagagaaaattgttactttttagagtattctatt
tttaaaacaagattgacttgggaaagaaattgtattatctgagactaaat
tttgtgatgaaagttggtgggtattctttagaacataacttactttgggg
aaaacaccaaatgactcagttctgtgtattttttgataacaagccttggt
ctttgaagaatgtagatgaatgggggcaacaaaagtacattattaaaaaa
tcgtggtcaatctgaggatattgtgcgttgtttatttctaagtgtatgtt
attctagaaaagacaatatcatagaggctagaaaatgaccagaaagcctg
gaggggaaagaatttggagtaagtgaaacacaggattttttagggcagag
aaacttctgcaggatgcactattcttcagtcagaaccataacaatacata
atgttgaaagtccgaaggctataacaagccatatttcccatgcagtttgt
ctaggaatttgcaactgatatgtaaagaacaaatattcagttcatcataa
gaggcatttcagaatgtaaacactcagacaataaggtaaatagaacactt
gctagtgatatacttgataaggttgtaatatttatatatttaaagaaatc
ctccaattatcaagccaaaaatgcattactatgacagattaaaacacagg
tgaaggagttcaagatcttaatttttaaaaacatacttgtagctaacatg
aatgtctgctcaaacaatttatgaatgaaatgtaaataaaagcctcaatg
acatgaatttacacccgttatcacacaggaaaaaataaatggatcaaaaa
aataacaggagccagtgagaatgtgggcaaactgaactttgtataacatt
ggaaggccgctcagatatgacatagacttattatattcttggagcagatc
tgccttctggattttaattttaataagttttaaa
gaattcatatgcatatattagtgagaaatttcttggcttgtttgtttgtt
ttccttttgagaggactaaactgtgtacttttggatgttctggaatatat
tagctaccagaactagcttcagattcttttctttttttttcttttctttc
ctttcttttttttttttttgagagggaaaacacatgcattttattcatta
tgaaaatatacatatttatatttggcaatgtatatacactaaatatattt
tttctgaattgtgaaatttaaggtgtagttataacttcttcagcttaggt
tttctgtattaatcattttatttgtttacatttcaaatgatatccccctt
tccagttacacttctacaaccccggcaacccatcccattccatttcccct
ttccttttcatctatgagggtgctgctccacctattcacccactcctaca
ctggtacatcaagcctccctgtgctctgctacatatgactctggagccaa
ggctcctgccatgtatactctttagatgatgttttagtctctgagatctc
tgggtggttcagttagttggtattgttcttcctatggggttgcagtcccc
ttcagctccttcagccctttccctagctcttccattggggtcctctggtt
cagtctgttgactggctgtgagtatctgcatctgtattggtcaggtgctg
gtaaaacctctcagggaacagccataccaggctcctcccagcaagcactt
attggaatcagctatagtccccagtttggtgtctacaggtgggatggatt
cccaggtggggcactctctgaattccctttccttcagtcccctgctccat
gtttttgtccctgtctttccctttggacagcaacagttctgggttaaaaa
ttttgagatgggtaggttgacttcaaattcttatttctcttgccttagtc
tgtgggtgcccaggtggcagtatttacagagatacactaacacccccaag
cttaccaaccaaatttgagttcagttagaaagtagccaattttatatgtg
atctccaattttatttcctttttctattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61676704_61677840
seq2: B6Ng01-220B17.b_43_1176

seq1  GAATTCTAACTGTCAAAATGCTGAAAATTCAGGGTAGAACAGTAAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTGTCAAAATGCTGAAAATTCAGGGTAGAACAGTAAGGCAA  50

seq1  AAAGGCCAAAGCATTGGTGTGAATGTGAGGAAGACATATCCCTAAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAAAGCATTGGTGTGAATGTGAGGAAGACATATCCCTAAGCTTG  100

seq1  ATTCATAGGGTTTTTATCATATTTGAAAATAATTATTGGAGGAAAACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGGGTTTTTATCATATTTGAAAATAATTATTGGAGGAAAACCAT  150

seq1  ATTTTGTTTCTGAGAGTAGAGAAAATTGTTACTTTTTAGAGTATTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTCTGAGAGTAGAGAAAATTGTTACTTTTTAGAGTATTCTATT  200

seq1  TTTAAAACAAGATTGACTTGGGAAAGAAATTGTATTATCTGAGACTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAAGATTGACTTGGGAAAGAAATTGTATTATCTGAGACTAAAT  250

seq1  TTTGTGATGAAAGTTGGTGGGTATTCTTTAGAACATAACTTACTTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGAAAGTTGGTGGGTATTCTTTAGAACATAACTTACTTTGGGG  300

seq1  AAAACACCAAATGACTCAGTTCTGTGTATTTTTTGATAACAAGCCTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCAAATGACTCAGTTCTGTGTATTTTTTGATAACAAGCCTTGGT  350

seq1  CTTTGAAGAATGTAGATGAATGGGGGCAACAAAAGTACATTATTAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGAATGTAGATGAATGGGGGCAACAAAAGTACATTATTAAAAAA  400

seq1  TCGTGGTCAATCTGAGGATATTGTGCGTTGTTTATTTCTAAGTGTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTCAATCTGAGGATATTGTGCGTTGTTTATTTCTAAGTGTATGTT  450

seq1  ATTCTAGAAAAGACAATATCATAGAGGCTAGAAAATGACCAGAAAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGAAAAGACAATATCATAGAGGCTAGAAAATGACCAGAAAGCCTG  500

seq1  GAGGGGAAAGAATTTGGAGTAAGTGAAACACAGGATTTTTTAGGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAAGAATTTGGAGTAAGTGAAACACAGGATTTTTTAGGGCAGAG  550

seq1  AAACTTCTGCAGGATGCACTATTCTTCAGTCAGAACCATAACAATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGCAGGATGCACTATTCTTCAGTCAGAACCATAACAATACATA  600

seq1  ATGTTGAAAGTCCGAAGGCTATAACAAGCCATATTTCCCATGCAGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAAGTCCGAAGGCTATAACAAGCCATATTTCCCATGCAGTTTGT  650

seq1  CTAGGAATTTGCAACTGATATGTAAAGAACAAATATTCAGTTCATCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATTTGCAACTGATATGTAAAGAACAAATATTCAGTTCATCATAA  700

seq1  GAGGCATTTCAGAATGTAAACACTCAGACAATAAGGTAAATAGAACACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTTCAGAATGTAAACACTCAGACAATAAGGTAAATAGAACACTT  750

seq1  GCTAGTGATATACTTGATAAGGTTGTAATATTTATATATTTAAAGAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGATATACTTGATAAGGTTGTAATATTTATATATTTAAAGAAATC  800

seq1  CTCCAATTATCAAGCCAAAAATGCATTACTATGACAGATTAAAACACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTATCAAGCCAAAAATGCATTACTATGACAGATTAAAACACAGG  850

seq1  TGAAGGAGTTCAAGATCTTAATTTTTAAAAACATACTTGTAGCTAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGTTCAAGATCTTAATTTTTAAAAACATACTTGTAGCTAACATG  900

seq1  AATGTCTGCTCAAACAATTTATGAATGAAATGTAAATAAAAGCCTCAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCTCAAACAATTTATGAATGAAATGTAAATAAAAGCCTCAATG  950

seq1  ACATGAATTTACACCCGTTATCACACAAGAAAAAATAAATGGATCAAAAA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACATGAATTTACACCCGTTATCACACAGGAAAAAATAAATGGATCAAAAA  1000

seq1  AATAACAAGAGCCAGTGAGAATGTGGGCAAACTGAAACTTTTGTATACAA  1050
      ||||||| ||||||||||||||||||||||||||||   ||||||||  |
seq2  AATAACAGGAGCCAGTGAGAATGTGGGCAAACTGAA--CTTTGTATAACA  1048

seq1  TTGG-AGGCCGCTCAAGATATTGAACATAGACTTATTATATTCTT-GAGC  1098
      |||| ||||||||| ||||||   ||||||||||||||||||||| ||||
seq2  TTGGAAGGCCGCTC-AGATAT--GACATAGACTTATTATATTCTTGGAGC  1095

seq1  AGATCTG-CTTCTGGAATTTTAATTTATATAGTTTTTAAA  1137
      ||||||| ||||||| ||||||||||  |||  |||||||
seq2  AGATCTGCCTTCTGG-ATTTTAATTTTAATAAGTTTTAAA  1134

seq1: chr8_61857186_61858258
seq2: B6Ng01-220B17.g_67_1146 (reverse)

seq1  TTTATAGAAAA--GAAATAAAATTGAGAATTCACATATAAAA-TGGCTAC  47
      || ||||||||  |||||||||||| ||  |||||||||||| |||||||
seq2  TTAATAGAAAAAGGAAATAAAATTG-GAGATCACATATAAAATTGGCTAC  49

seq1  TTTCTAACTGACCTCAAATTT-GTGTGTAAGCTT-GGGGTGTTAGTGTAT  95
      ||||||||||| ||||||||| ||  |||||||| |||||||||||||||
seq2  TTTCTAACTGAACTCAAATTTGGTTGGTAAGCTTGGGGGTGTTAGTGTAT  99

seq1  CTCTGTAAATACTGC--ACTGGGCACCCACAGAACTAAGGCAAGAGAAAT  143
      |||||||||||||||   |||||||||||||| |||||||||||||||||
seq2  CTCTGTAAATACTGCCACCTGGGCACCCACAG-ACTAAGGCAAGAGAAAT  148

seq1  AAGAATTTGAGGTCAACCTACCCATCTCAAAATTTTTAACCCAGAACTGT  193
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGAAGTCAACCTACCCATCTCAAAATTTTTAACCCAGAACTGT  198

seq1  TGCTGTCCAAA-GGAAAGACAGGGACAAAAACATGGAGCA-GGGACTGAA  241
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  TGCTGTCCAAAGGGAAAGACAGGGACAAAAACATGGAGCAGGGGACTGAA  248

seq1  GGAAAGGGAATTCAGAGAGTGCCCCACCTGGGAATCCATCCCACCTGTAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAATTCAGAGAGTGCCCCACCTGGGAATCCATCCCACCTGTAG  298

seq1  ACACCAAACTGGGGACTATAGCTGATTCCAATAAGTGCTTGCTGGGAGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAACTGGGGACTATAGCTGATTCCAATAAGTGCTTGCTGGGAGGA  348

seq1  GCCTGGTATGGCTGTTCCCTGAGAGGTTTTACCAGCACCTGACCAATACA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTATGGCTGTTCCCTGAGAGGTTTTACCAGCACCTGACCAATACA  398

seq1  GATGCAGATACTCACAGCCAGTCAACAGACTGAACCAGAGGACCCCAATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGATACTCACAGCCAGTCAACAGACTGAACCAGAGGACCCCAATG  448

seq1  GAAGAGCTAGGGAAAGGGCTGAAGGAGCTGAAGGGGACTGCAACCCCATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTAGGGAAAGGGCTGAAGGAGCTGAAGGGGACTGCAACCCCATA  498

seq1  GGAAGAACAATACCAACTAACTGAACCACCCAGAGATCTCAGAGACTAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAATACCAACTAACTGAACCACCCAGAGATCTCAGAGACTAAA  548

seq1  ACATCATCTAAAGAGTATACATGGCAGGAGCCTTGGCTCCAGAGTCATAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCTAAAGAGTATACATGGCAGGAGCCTTGGCTCCAGAGTCATAT  598

seq1  GTAGCAGAGCACAGGGAGGCTTGATGTCCCAGTGTAGGAGTGGGTGAATA  641
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGCAGAGCACAGGGAGGCTTGATGTACCAGTGTAGGAGTGGGTGAATA  648

seq1  GGTGGAGCAGCACCCTCATAGATGAAAAGGAAAGGGGAAATGGAATGGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCAGCACCCTCATAGATGAAAAGGAAAGGGGAAATGGAATGGGA  698

seq1  TGGGTTGCCGGGGTTGTAGAAGTGTAACTGGAAAGGGGGATATCATTTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCCGGGGTTGTAGAAGTGTAACTGGAAAGGGGGATATCATTTGA  748

seq1  AATGTAAACAAATAAAATGATTAATACAGAAAACCTAAGCTGAAGAAGTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAACAAATAAAATGATTAATACAGAAAACCTAAGCTGAAGAAGTT  798

seq1  ATAACTACACCTTAAATTTCACAATTCAGAAAAAATATATTTAGTGTATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACACCTTAAATTTCACAATTCAGAAAAAATATATTTAGTGTATA  848

seq1  TACATTGCCAAATATAAATATGTATATTTTCATAATGAATAAAATGCATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCCAAATATAAATATGTATATTTTCATAATGAATAAAATGCATG  898

seq1  TGTTTTCCCTCTCAAAAAAAAAAAAAAGAAAGGAAAGAAAAGAAAAAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCCTCTCAAAAAAAAAAAAAAGAAAGGAAAGAAAAGAAAAAAAA  948

seq1  AGAAAAGAATCTGAAGCTAGTTCTGGTAGCTAATATATTCCAGAACATCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATCTGAAGCTAGTTCTGGTAGCTAATATATTCCAGAACATCC  998

seq1  AAAAGTACACAGTTTAGTCCTCTCAAAAGGAAAACAAACAAACAAGCCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACACAGTTTAGTCCTCTCAAAAGGAAAACAAACAAACAAGCCAA  1048

seq1  GAAATTTCTCACTAATATATGCATATGAATTC  1073
      ||||||||||||||||||||||||||||||||
seq2  GAAATTTCTCACTAATATATGCATATGAATTC  1080