BAC Information

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BAC

Clone NameB6Ng01-220N12
Chromosome8 (Build37)
Map Location 22,344,333 - 22,390,433
singlet/doubletdoublet
Overlap geneLOC672740, EG665969, LOC100041787
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759
Downstream geneDefcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220N12.bB6Ng01-220N12.g
ACCGA036299GA036300
length1,080935
definitionB6Ng01-220N12.b B6Ng01-220N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,344,333 - 22,345,407)(22,389,486 - 22,390,433)
sequence
gaattcagtttctggaaacacccctgcttcagtattttcacacaaatact
tgagaaccataaggaggaattctgattagaaaaattggttgattcagaaa
ataaatgtgttgccctacctttttttttttttttttcctgatggatctta
tatggttgcacaaagaatgtagggtagttctagaaagtctttgtagtctg
aaattctagaaaaatgacaaacacttgctagtttttctcatgttctagca
atcacaaagaccatacagccaacaccactaaatcccttcccatggacaga
gacctgaaccacacatgggttgcacacttatcttgcatccccattataga
aaactggatatacaaagaataagaagttgttcaccaaagcaccccaaata
ggacaggaccatatgccacttatctagcatgtgctttcagagttaatctt
cagaaactaggtgaaaagatgaagtctccacttcatcaatgaattgacaa
aacaaaggttgatattcaaaataatccacacaagtcacacattttatcat
tttgaacgtaaatgaacatgctctcctatcctactgctgtgtaagatatc
attacaagaagaaatggttttgaagcaacacacacatgtgttctaactca
tattttctattcggacattggtcagtccataggcccagagatgagtggtc
ctctaggatttagagtgtctgttgctgaaaaattctccatcatgtttagc
tagtctatactggggtacaggtgttaggaaggagccaagagctgagaaca
ggtgtgcagaggacacccatccatcctggctcagtggggagggatcatca
tcaacctgtgggaagtagagtgggtttttgatgaattatgtttgcaaaca
ttataagccaaaatattttcccaataaaggtaacacataacaactactat
tctaccacgataaggccctcagttcttttccctgtggttcccccccacaa
gattcagagtttcctcaagtatgcagatgggtttccagttgtgaacatct
tgcttagtcaatttttgtcttattatagca
gaattctaagctttctatacattttgtgtctgaacatggagtcatcctta
aattgatattatttggagccaggattttacatgtaagaaattaaagtatt
cattcattgcaaaggtttccttgaaggttctgatactttatatacagagt
cttaactgagccttgtagcatacattgaaagaatgtaaacaaaaggaagc
atactgcggacaatttattgagaagtggacatcaggccccagcatcagtg
gcctcagtgctcatggaagtcttgtcctctggggtctccatgttcagagg
cagcagagtgtgtacattaaatgaccctttctgcaggtcccattaatgcg
ttctcttcttgtgcagcctctttttctacaatagcatcccagatctctca
acgctggggacacaaaaagaatcaggcattaagatttgaggttggcgcag
tatgtgatcctatggggatctgtgataaagcatgagagtgctgctttggt
cacagtacagccttcagcatggacatctcaaccaatagtgcagttcaggg
gtgttactagtcctgttctagaagcaactactcagagtattggagcagtc
tgattgttgaacttccgatgtgtatctttttatagtaaagccttatgaga
aagaaattttattagagttactttacactcgttgttactgttataaatat
aaaaggaattaaatagagttgctaaggagcacattactctaccaggattc
tagggctcatcttcatcacatctcagaagactgcaagtgtcatcacactg
agcaccagtactcacattcttctggaagatcagagcttctggatttccaa
agagacagaactaggctgctcctctcctctggctgcacctcagatagtcc
tctccatctgttttttgatagatcagcctgacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_22344333_22345407
seq2: B6Ng01-220N12.b_52_1131

seq1  GAATTCAGTTTCTGGAAACACCCCTGCTTCAGTATTTTCACACAAATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTGGAAACACCCCTGCTTCAGTATTTTCACACAAATACT  50

seq1  TGAGAACCATAAGGAGGAATTCTGATTAGAAAAATTGGTTGATTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCATAAGGAGGAATTCTGATTAGAAAAATTGGTTGATTCAGAAA  100

seq1  ATAAATGTGTTGCCCTACCTTTTTTTTTTTTTTTTTCCTGATGGATCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGTTGCCCTACCTTTTTTTTTTTTTTTTTCCTGATGGATCTTA  150

seq1  TATGGTTGCACAAAGAATGTAGGGTAGTTCTAGAAAGTCTTTGTAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGCACAAAGAATGTAGGGTAGTTCTAGAAAGTCTTTGTAGTCTG  200

seq1  AAATTCTAGAAAAATGACAAACACTTGCTAGTTTTTCTCATGTTCTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGAAAAATGACAAACACTTGCTAGTTTTTCTCATGTTCTAGCA  250

seq1  ATCACAAAGACCATACAGCCAACACCACTAAATCCCTTCCCATGGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAGACCATACAGCCAACACCACTAAATCCCTTCCCATGGACAGA  300

seq1  GACCTGAACCACACATGGGTTGCACACTTATCTTGCATCCCCATTATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAACCACACATGGGTTGCACACTTATCTTGCATCCCCATTATAGA  350

seq1  AAACTGGATATACAAAGAATAAGAAGTTGTTCACCAAAGCACCCCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGATATACAAAGAATAAGAAGTTGTTCACCAAAGCACCCCAAATA  400

seq1  GGACAGGACCATATGCCACTTATCTAGCATGTGCTTTCAGAGTTAATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGACCATATGCCACTTATCTAGCATGTGCTTTCAGAGTTAATCTT  450

seq1  CAGAAACTAGGTGAAAAGATGAAGTCTCCACTTCATCAATGAATTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTAGGTGAAAAGATGAAGTCTCCACTTCATCAATGAATTGACAA  500

seq1  AACAAAGGTTGATATTCAAAATAATCCACACAAGTCACACATTTTATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGTTGATATTCAAAATAATCCACACAAGTCACACATTTTATCAT  550

seq1  TTTGAACGTAAATGAACATGCTCTCCTATCCTACTGCTGTGTAAGATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACGTAAATGAACATGCTCTCCTATCCTACTGCTGTGTAAGATATC  600

seq1  ATTACAAGAAGAAATGGTTTTGAAGCAACACACACATGTGTTCTAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGAAGAAATGGTTTTGAAGCAACACACACATGTGTTCTAACTCA  650

seq1  TATTTTCTATTCGGACATTGGTCAGTCCATAGGCCCAGAGATGAGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATTCGGACATTGGTCAGTCCATAGGCCCAGAGATGAGTGGTC  700

seq1  CTCTAGGATTTAGAGTGTCTGTTGCTGAAAAATTCTCCATCATGTTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGATTTAGAGTGTCTGTTGCTGAAAAATTCTCCATCATGTTTAGC  750

seq1  TAGTCTATACTGGGGTACAGGTGTTAGGAAGGAGCCAAGAGCTGAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATACTGGGGTACAGGTGTTAGGAAGGAGCCAAGAGCTGAGAACA  800

seq1  GGTGTGCAGAGGACACCCATCCATCCTGGCTCAGTGGGGAGGGATCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCAGAGGACACCCATCCATCCTGGCTCAGTGGGGAGGGATCATCA  850

seq1  TCAACCTGTGGGAAGTAGAGTGGGTTTTTGATGAATTATGTTTGCAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGTGGGAAGTAGAGTGGGTTTTTGATGAATTATGTTTGCAAACA  900

seq1  TTATAAGCCAAAATATTTTCCCAATAAAGGT-ACACATAACAACTACTAT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATAAGCCAAAATATTTTCCCAATAAAGGTAACACATAACAACTACTAT  950

seq1  TCTACCACGATAAGGGCCCTCAGTTC-TTTCCCTGTGGTT-CCCCCCACA  997
      ||||||||||||| |||||||||||| ||||||||||||| |||||||||
seq2  TCTACCACGATAA-GGCCCTCAGTTCTTTTCCCTGTGGTTCCCCCCCACA  999

seq1  AGATTCAGAG-TTCCTCAAAGTATGGCAGATGGG-TTCCAG-TGTGAACA  1044
      |||||||||| |||||| |||||| ||||||||| |||||| ||||||||
seq2  AGATTCAGAGTTTCCTC-AAGTAT-GCAGATGGGTTTCCAGTTGTGAACA  1047

seq1  TCTGCCTTAGTTCA-TTTTGTCTTA-TATAGCA  1075
      |||  ||||||  | |||||||||| |||||||
seq2  TCTTGCTTAGTCAATTTTTGTCTTATTATAGCA  1080

seq1: chr8_22389486_22390433
seq2: B6Ng01-220N12.g_67_1001 (reverse)

seq1  CAAGTCCAGGCTGATCCTATCCAAAAAACAGATGAAGA-GACTAATACTG  49
      ||||| ||||||||| |||| ||||||||||||| ||| |||||   |||
seq2  CAAGT-CAGGCTGAT-CTAT-CAAAAAACAGATGGAGAGGACTA--TCTG  45

seq1  AGGTGCAGCCAGAGGAAGAGGAGCAGGCTATGTCTGTCTCCTTTGGAAAT  99
      ||||||||||||||| |||||||||| |||  ||||||| ||||||||||
seq2  AGGTGCAGCCAGAGG-AGAGGAGCAGCCTAGTTCTGTCT-CTTTGGAAAT  93

seq1  CCAGAAGGCTCTGATCTTCAAGAAGAATGTGAGTACTGGTGCTCAGTGTG  149
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAGAA-GCTCTGATCTTCCAGAAGAATGTGAGTACTGGTGCTCAGTGTG  142

seq1  ATGGACACTTGCAGTCTCCTGAGATTGTGATGAAGATGAGCCCTAGAATC  199
      || |||||||||||||| |||||| |||||||||||||||||||||||||
seq2  AT-GACACTTGCAGTCTTCTGAGA-TGTGATGAAGATGAGCCCTAGAATC  190

seq1  CTGGTAGAGTAATGTGGCTCCCTTAGCAACTCTATTTTAATTCCTTTTAT  249
      ||||||||||||||| ||| |||||||||||||| |||||||||||||||
seq2  CTGGTAGAGTAATGT-GCT-CCTTAGCAACTCTA-TTTAATTCCTTTTAT  237

seq1  ATTTATAACAGTAACAACGAGTGTAAAGTAACTCTAATAAAATTTCTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACAGTAACAACGAGTGTAAAGTAACTCTAATAAAATTTCTTTC  287

seq1  TCATAAGGCTTTTACTATAAAAAGATACACATCGGAAGTTCAACAATCAG  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGC-TTTACTATAAAAAGATACACATCGGAAGTTCAACAATCAG  336

seq1  ACTGCTCCAATACTCTGAGTAGTTGCTTCTAGAACAGGACTAGTAACACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCAATACTCTGAGTAGTTGCTTCTAGAACAGGACTAGTAACACC  386

seq1  CCTGAACTGCACTATTGGTTGAGATGTCCATGCTGAAGGCTGTACTGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTGCACTATTGGTTGAGATGTCCATGCTGAAGGCTGTACTGTGA  436

seq1  CCAAAGCAGCACTCTCATGCTTTATCACAGATCCCCATAGGATCACATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAGCACTCTCATGCTTTATCACAGATCCCCATAGGATCACATAC  486

seq1  TGCGCCAACCTCAAATCTTAATGCCTGATTCTTTTTGTGTCCCCAGCGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCAACCTCAAATCTTAATGCCTGATTCTTTTTGTGTCCCCAGCGTT  536

seq1  GAGAGATCTGGGATGCTATTGTAGAAAAAGAGGCTGCACAAGAAGAGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTGGGATGCTATTGTAGAAAAAGAGGCTGCACAAGAAGAGAAC  586

seq1  GCATTAATGGGACCTGCAGAAAGGGTCATTTAATGTACACACTCTGCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATGGGACCTGCAGAAAGGGTCATTTAATGTACACACTCTGCTGC  636

seq1  CTCTGAACATGGAGACCCCAGAGGACAAGACTTCCATGAGCACTGAGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACATGGAGACCCCAGAGGACAAGACTTCCATGAGCACTGAGGCC  686

seq1  ACTGATGCTGGGGCCTGATGTCCACTTCTCAATAAATTGTCCGCAGTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCTGGGGCCTGATGTCCACTTCTCAATAAATTGTCCGCAGTATG  736

seq1  CTTCCTTTTGTTTACATTCTTTCAATGTATGCTACAAGGCTCAGTTAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTGTTTACATTCTTTCAATGTATGCTACAAGGCTCAGTTAAGA  786

seq1  CTCTGTATATAAAGTATCAGAACCTTCAAGGAAACCTTTGCAATGAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATATAAAGTATCAGAACCTTCAAGGAAACCTTTGCAATGAATGA  836

seq1  ATACTTTAATTTCTTACATGTAAAATCCTGGCTCCAAATAATATCAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAATTTCTTACATGTAAAATCCTGGCTCCAAATAATATCAATTT  886

seq1  AAGGATGACTCCATGTTCAGACACAAAATGTATAGAAAGCTTAGAATTC  948
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGACTCCATGTTCAGACACAAAATGTATAGAAAGCTTAGAATTC  935