BAC Information

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BAC

Clone NameB6Ng01-221D17
Chromosome1 (Build37)8 (Build37)
Map Location 146,316,591 - 146,317,72366,164,696 - 66,165,186
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456
Downstream geneRgs21, Rgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221D17.bB6Ng01-221D17.g
ACCGA036577GA036578
length1,127897
definitionB6Ng01-221D17.b B6Ng01-221D17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,316,591 - 146,317,723)(66,164,696 - 66,165,186)
sequence
gaattcagagaccagcttacctctgcctcccaaatagtatgattaaatat
gtgcacaagtatacctggatatattagcattttaaagtactctatcaaga
aaagtggtagcagtttggcaaggcgaatactaacataatttgtaaatcgg
gtggatgtatatcagttaattaattttactgttctattttataaaaggtt
tacttgtctgagtgtaacagagtttctctatgtatttctatttgtcccag
aacttgctgcgtagaccatgctagtcttgaactcacagagaaccaactgc
tgctgcctctgcctccttagagataggattaaagatgtgaaatacctcac
ccatcacatcactatttctctatatgatagtgtttcttacaattatatta
agagattaaagttctgctccctctaagcatttcaatttctccagtgcagt
tacttgtcagtgcttctgttactgaaagtcagtccacatacctgacacag
agttactggaaatgacaatgaaattagagttgaaaaaatattgcgagtaa
gacaagattctgagttataaagagcactataacaaaagccatcttctatt
tccatgcatatcctgtctcttctgatttcaaggaacattagaagagaaaa
atgttgtgactgccctaattgattcctaatgagctataggagatattgct
tatcacactgagaactggaggttccagcttccaaaggagctccctttctg
ttgttgctacttattaaagcctgttttctcatggtacattattttaaaga
ggcctgactttgcttcagagtgtcataagatatgttccctacagcacagc
cacgagaagtgaaagcactgtacattggcgtttaggtgtcacgaaagtca
gaagaaaaatccacaaaaaccaatgaagaaactttaagatgataaagcaa
tagcacaacaaagcaaacacataaacaaacaataaatgaaaccctggaga
acttttcacagcatgccttacttctcatagagaaccataagatctggaaa
ttaaatgggggattgtttcttcagatcataatttatcttcttttatgatt
atatatttacagaattttggcttatca
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
ttaaatgctttctcagcatctagcgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacgttgatggatttttgtatattaaacc
atccctgcatccctggaataaaacttacttggtcaggatggatgattttt
ttgatgtgttcttggatttggttagcaagaattttattgaggattttttc
atagatattcataaggcaaattggtgtgaaattctctatctttgttgggt
ctttctgtggcttaggtatcagactaattgtggcttcatagaatgaattg
ggtagagtaccttctgcttctattttatggaatagtttgtgaagaactgg
aattagatcttctttgaaggtctgataggactctgcactaaacccatctg
gtcctggacttcttttggttgggagactattaatgactgcttctatttct
ttaggggatataggaatgtttagatcattgaccagatcctgatttaattt
gggtacctggtatctgtctagaaatttgtccatttcatccaggttttcca
attttgttgagtatagccttttgtagaaagatctgatggtgttttggatt
tcttcaggatctgtttgttatgtctccttttttcattcctgatgttgtta
attaggatgctgtctctatgccctctggtgaatctgactaagggtttatc
tatcttgttgattttctcaaagacccagctcctcatttggtgatactttg
aattagttcttcttgtttcacttggtgattcgcccatgagtttgactaat
ttcttgccaactacttctcttgggtgaatttactttcctttttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_146316591_146317723
seq2: B6Ng01-221D17.b_51_1177 (reverse)

seq1  TGATAAGCC-AAATTCTGTAAAATATATAATCAT-AAAGAAGATAAAATA  48
      ||||||||| ||||||||| |||||||||||||| ||||||||| |||| 
seq2  TGATAAGCCAAAATTCTGT-AAATATATAATCATAAAAGAAGAT-AAATT  48

seq1  ATGATCTGGAGAAACAAATCCCCATTTTAATTTCCAGATC-TATGGTTTC  97
      |||||||| |||||| |||||||  ||||||||||||||| ||||| |||
seq2  ATGATCTGAAGAAAC-AATCCCCCATTTAATTTCCAGATCTTATGG-TTC  96

seq1  TCTTATGAGAAGTAAGGCATGCTGTGAAAAGTTCTCCAGGGTTTTCATTT  147
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TC-TATGAGAAGTAAGGCATGCTGTGAAAAGTTCTCCAGGG-TTTCATTT  144

seq1  ATTTGTTTTGTTTTATGTGTTTGCTTTTGTTGTTGCTATTGCTTTATCAT  197
      | ||||||   ||||||||||||| ||||||| |||||||||||||||||
seq2  A-TTGTTT--GTTTATGTGTTTGC-TTTGTTG-TGCTATTGCTTTATCAT  189

seq1  CTT-AAGTTTCTTCATTGGTTTTTGTGGATTTTTCTTCTGACTTTCGTGA  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTTCTTCATTGGTTTTTGTGGATTTTTCTTCTGACTTTCGTGA  239

seq1  CACCT-AACGCCAATGTACAGTGCTTTCACTTCTCGTGGCTGTGCTGTAG  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAACGCCAATGTACAGTGCTTTCACTTCTCGTGGCTGTGCTGTAG  289

seq1  GGAACATATCTTATGACACTCTGAAGCAAAGTCAGGCCTCTTTAAAATAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATATCTTATGACACTCTGAAGCAAAGTCAGGCCTCTTTAAAATAA  339

seq1  TGTACCATGAGAAAACAGGCTTTAATAAGTAGCAACAACAGAAAGGGAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATGAGAAAACAGGCTTTAATAAGTAGCAACAACAGAAAGGGAGC  389

seq1  TCCTTTGGAAGCTGGAACCTCCAGTTCTCAGTGTGATAAGCAATATCTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGAAGCTGGAACCTCCAGTTCTCAGTGTGATAAGCAATATCTCC  439

seq1  TATAGCTCATTAGGAATCAATTAGGGCAGTCACAACATTTTTCTCTTCTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCATTAGGAATCAATTAGGGCAGTCACAACATTTTTCTCTTCTA  489

seq1  ATGTTCCTTGAAATCAGAAGAGACAGGATATGCATGGAAATAGAAGATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTTGAAATCAGAAGAGACAGGATATGCATGGAAATAGAAGATGG  539

seq1  CTTTTGTTATAGTGCTCTTTATAACTCAGAATCTTGTCTTACTCGCAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTATAGTGCTCTTTATAACTCAGAATCTTGTCTTACTCGCAATA  589

seq1  TTTTTTCAACTCTAATTTCATTGTCATTTCCAGTAACTCTGTGTCAGGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAACTCTAATTTCATTGTCATTTCCAGTAACTCTGTGTCAGGTA  639

seq1  TGTGGACTGACTTTCAGTAACAGAAGCACTGACAAGTAACTGCACTGGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTGACTTTCAGTAACAGAAGCACTGACAAGTAACTGCACTGGAG  689

seq1  AAATTGAAATGCTTAGAGGGAGCAGAACTTTAATCTCTTAATATAATTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAATGCTTAGAGGGAGCAGAACTTTAATCTCTTAATATAATTGT  739

seq1  AAGAAACACTATCATATAGAGAAATAGTGATGTGATGGGTGAGGTATTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACTATCATATAGAGAAATAGTGATGTGATGGGTGAGGTATTTC  789

seq1  ACATCTTTAATCCTATCTCTAAGGAGGCAGAGGCAGCAGCAGTTGGTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAATCCTATCTCTAAGGAGGCAGAGGCAGCAGCAGTTGGTTCT  839

seq1  CTGTGAGTTCAAGACTAGCATGGTCTACGCAGCAAGTTCTGGGACAAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTTCAAGACTAGCATGGTCTACGCAGCAAGTTCTGGGACAAATA  889

seq1  GAAATACATAGAGAAACTCTGTTACACTCAGACAAGTAAACCTTTTATAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACATAGAGAAACTCTGTTACACTCAGACAAGTAAACCTTTTATAA  939

seq1  AATAGAACAGTAAAATTAATTAACTGATATACATCCACCCGATTTACAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACAGTAAAATTAATTAACTGATATACATCCACCCGATTTACAAA  989

seq1  TTATGTTAGTATTCGCCTTGCCAAACTGCTACCACTTTTCTTGATAGAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAGTATTCGCCTTGCCAAACTGCTACCACTTTTCTTGATAGAGT  1039

seq1  ACTTTAAAATGCTAATATATCCAGGTATACTTGTGCACATATTTAATCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATGCTAATATATCCAGGTATACTTGTGCACATATTTAATCAT  1089

seq1  ACTATTTGGGAGGCAGAGGTAAGCTGGTCTCTGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGGGAGGCAGAGGTAAGCTGGTCTCTGAATTC  1127

seq1: chr8_66164696_66165186
seq2: B6Ng01-221D17.g_444_960 (reverse)

seq1  AGAAAAAAAGG-AAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA-T  48
      ||||||||||| ||| ||||||||||||||| |||||  |||| |||| |
seq2  AGAAAAAAAGGAAAGTAAATTCACCCAAGAGAAGTAGTTGGCAAGAAATT  50

seq1  AATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACT-ATT  97
      | ||||||||| ||| | |||| ||||||| ||||||||||||||| |||
seq2  AGTCAAACTCATGGGCG-AATC-ACCAAGT-GAAACAAGAAGAACTAATT  97

seq1  CAAAGAATTAACCAAACGAGGAGTTGGTTCT-------------------  128
      ||||| | | |||||| |||||| ||| |||                   
seq2  CAAAGTA-TCACCAAATGAGGAGCTGGGTCTTTGAGAAAATCAACAAGAT  146

seq1  ------ACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAA  172
            ||||||||  ||| |||| | |||||| || ||||  |||||||
seq2  AGATAAACCCTTAGTCAGATTCACCAGAGGGCATAGAGACAGCATCCTAA  196

seq1  TTAACAAAATCAGAAATG-AAAAGGGAGACATAAC-AACAGATCCTGAAG  220
      ||||||| ||||| |||| |||| ||||||||||| ||||||||||||||
seq2  TTAACAACATCAGGAATGAAAAAAGGAGACATAACAAACAGATCCTGAAG  246

seq1  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  270
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATCCAAAACACCATCAGATCTTTCTACAAAAGGCTATACTCAACAAAA  296

seq1  CTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC  320
       ||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TTGGAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACC  346

seq1  AAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCAA  370
       || || ||||||||||  ||  |  ||||||||| ||| ||||| || |
seq2  CAAATTAAATCAGGATCTGGTCAATGATCTAAACATTCCTATATCCCCTA  396

seq1  AAGAAATAGACGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGA  420
      |||||||||| ||||| |||||||||||||||||||||| ||| ||||||
seq2  AAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAGAAGTCCAGGA  446

seq1  CCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAAT  470
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAGATGGGTTTAGTGCAGAGTCCTATCAGACCTTCAAAGAAGATCTAAT  496

seq1  TCCAATTCTGCACAAACTATT  491
      |||| |||| |||||||||||
seq2  TCCAGTTCTTCACAAACTATT  517