BAC Information

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BAC

Clone NameB6Ng01-221P03
Chromosome8 (Build37)
Map Location 52,186,342 - 52,335,891
singlet/doubletdoublet
Overlap geneLOC667517
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC623872, LOC100040220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221P03.bB6Ng01-221P03.g
ACCGA037099GA037100
length1,1761,169
definitionB6Ng01-221P03.b B6Ng01-221P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,186,342 - 52,187,523)(52,335,308 - 52,335,891)
sequence
gaattcaatcagaaaagatttgcccagtgatgcccactgagttggcagat
tcacagaccccagacaggcttggaagcttctcaatgggatgggcaaagtt
tctacacaaaaatgtcactttcaacatctaatattaatctgtgaaggtgt
ctttaaacataaaaattaaagtttctaacaaatgcacaagcataaaaatc
aagtgtgtttctttaggtttacttcataaaattttctatacattgcattt
tgtattgcagagtgctatatcactacccattgaatacataggacttcaca
ggtgttgttccttgaagtagaataaatatctacagaattcttttccctgt
cttcactcagccttgacccctacttgtcacaaattcagacaaatgtaccc
tcctcacaactggtagctctacttcctctgttggtttctggctgttgtgt
ggcctcagggctcagagattaatgtgctggctggtatcctatgcagaacc
ctaactgtagattcatagacttaaaggaagccagaactcagtccattaaa
ttctgtctagacatgaatgtggggccacctactagagcatagagaagctc
tcattgatcatatccttaacagagaatgatcttcctcttccaaacattgt
tatacttccagtagctaccaaatatggggcagagcttggggatcatctac
cacctatctgcgactcttttggcagatttgttctggttcaggtaactata
catttcctgagttcgtgtgtctaataactatgtcatgtccagagcactgg
gtgtcatttcacagaatttagtggattaatcaataaagatttcagcagta
tttataatggcataaaatcaagttaaaagaaagaatgatttgtatggtat
gtgtcataaagtgtaattttaaattttaaagagtattttaagtaaatgaa
atgaagtggacaggaataaaaggtcacatgctgtgtaatgtcacccatgt
gacgtgtccaaaatcagtaattcatagtggcaaaagtagattacttaacg
cagattgtctatagccgaagaagaagggtacaactgggagagcatgaact
agactgcatgttatgcacatcaaattgaaatttgtgaaagccatttcaga
atactgatgatgaaaacatgcatttg
gaattcagctgtactcagttaagttcagtgcagtttggagcaatccagtt
caaggactttaagaggcagcctttccaagcagacaatttagttagaagcc
aagagaagccaatatgaatcagtcatccttgaaaggagttcgagccagaa
catctgatttgaaccagccattcagagttcagaaatagctagaaagggca
aacttatttaccagtaagtctccaaatgtcaattacatctgtcaaataag
ttacttttgcaggataactaattaatttctgaggatttgaagtcagttcc
actgtagtgaatttcatgccaggtacctcaatcctggtcaaaatcccata
tctgggcaccaatgtgtgtcatatgcactaagaagaatctgttactatta
ttttcctaaatgttcgcattctaaaatttctgtctatttatgtttagacc
cttagacataaactgttttcaaatttgtctgagacaattcttcctgtagt
taccaggagattgtagagagatgttataacttgttaacaagctgagaaca
aatgactgcctactcagcccttataggacacctatgtcaatcccacattt
ctaccaaaactcaaggagcataccaggggaagatagaaacaaaatgtaag
agctggcgtatcatgggggaaggccatgtatcaaattttaaggaacttat
atgtctttggagtgctgtgtatgaagttatattgaaaatttggactattc
atgctacccctaaactttgataaaatttctattatgatgcaagaagataa
aatatcgatttatataatggaagaatgctagtgaattctattacaagtgg
gaaaatatctacctagttcactttaaagacgtaacaaagggctctcccaa
ggataaaaaggagaatttcatctattctacattatgtggctttcttccta
tttggtctctagtatgagtgttgaaagtgcatcttctgataaagctgcat
ctgcagggttccttagactaacactaacaaatgcaaactgacacttctga
atggattagtgtgcaatatcaacatcttctatgggctttcatcctttcta
tatccaatttgaactgcctttggaggcatttggaataatgataatatcaa
ttctagaacttgatccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52186342_52187523
seq2: B6Ng01-221P03.b_45_1220

seq1  GAATTCAATCAGAAAAGATTTGCCCAGTGATGCCCACTGAGTTGGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAGAAAAGATTTGCCCAGTGATGCCCACTGAGTTGGCAGAT  50

seq1  TCACAGACCCCAGACAGGCTTGGAAGCTTCTCAATGGGATGGGCAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACCCCAGACAGGCTTGGAAGCTTCTCAATGGGATGGGCAAAGTT  100

seq1  TCTACACAAAAATGTCACTTTCAACATCTAATATTAATCTGTGAAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAAAAATGTCACTTTCAACATCTAATATTAATCTGTGAAGGTGT  150

seq1  CTTTAAACATAAAAATTAAAGTTTCTAACAAATGCACAAGCATAAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACATAAAAATTAAAGTTTCTAACAAATGCACAAGCATAAAAATC  200

seq1  AAGTGTGTTTCTTTAGGTTTACTTCATAAAATTTTCTATACATTGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTTCTTTAGGTTTACTTCATAAAATTTTCTATACATTGCATTT  250

seq1  TGTATTGCAGAGTGCTATATCACTACCCATTGAATACATAGGACTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCAGAGTGCTATATCACTACCCATTGAATACATAGGACTTCACA  300

seq1  GGTGTTGTTCCTTGAAGTAGAATAAATATCTACAGAATTCTTTTCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTTCCTTGAAGTAGAATAAATATCTACAGAATTCTTTTCCCTGT  350

seq1  CTTCACTCAGCCTTGACCCCTACTTGTCACAAATTCAGACAAATGTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCAGCCTTGACCCCTACTTGTCACAAATTCAGACAAATGTACCC  400

seq1  TCCTCACAACTGGTAGCTCTACTTCCTCTGTTGGTTTCTGGCTGTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAACTGGTAGCTCTACTTCCTCTGTTGGTTTCTGGCTGTTGTGT  450

seq1  GGCCTCAGGGCTCAGAGATTAATGTGCTGGCTGGTATCCTATGCAGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGGCTCAGAGATTAATGTGCTGGCTGGTATCCTATGCAGAACC  500

seq1  CTAACTGTAGATTCATAGACTTAAAGGAAGCCAGAACTCAGTCCATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTAGATTCATAGACTTAAAGGAAGCCAGAACTCAGTCCATTAAA  550

seq1  TTCTGTCTAGACATGAATGTGGGGCCACCTACTAGAGCATAGAGAAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTAGACATGAATGTGGGGCCACCTACTAGAGCATAGAGAAGCTC  600

seq1  TCATTGATCATATCCTTAACAGAGAATGATCTTCCTCTTCCAAACATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATCATATCCTTAACAGAGAATGATCTTCCTCTTCCAAACATTGT  650

seq1  TATACTTCCAGTAGCTACCAAATATGGGGCAGAGCTTGGGGATCATCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCCAGTAGCTACCAAATATGGGGCAGAGCTTGGGGATCATCTAC  700

seq1  CACCTATCTGCGACTCTTTTGGCAGATTTGTTCTGGTTCAGGTAACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCTGCGACTCTTTTGGCAGATTTGTTCTGGTTCAGGTAACTATA  750

seq1  CATTTCCTGAGTTCGTGTGTCTAATAACTATGTCATGTCCAGAGCACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTGAGTTCGTGTGTCTAATAACTATGTCATGTCCAGAGCACTGG  800

seq1  GTGTCATTTCACAGAATTTAGTGGATTAATCAAT-AAGATTTCAGCAGTA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTCATTTCACAGAATTTAGTGGATTAATCAATAAAGATTTCAGCAGTA  850

seq1  TTTATAATGGCATAAAATCAAGTTAAAAGAAAGAATGATTTGTATGGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGGCATAAAATCAAGTTAAAAGAAAGAATGATTTGTATGGTAT  900

seq1  GTGTCATAAAGGTGTAATTTTAAATTTTAAAGAGTATTTTAAGTAAATGA  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATAAA-GTGTAATTTTAAATTTTAAAGAGTATTTTAAGTAAATGA  949

seq1  AATGAAGTGGACAGGAATAAAAGGTCACATGCTGTGTAATGTCACCCATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTGGACAGGAATAAAAGGTCACATGCTGTGTAATGTCACCCATG  999

seq1  TGACGTGTCCAAAATCAGTAATTCATAGTGGCAAAAAGTAGATTACTTAA  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGACGTGTCCAAAATCAGTAATTCATAGTGGC-AAAAGTAGATTACTTAA  1048

seq1  CGCAGATTGTCTATAGCCCGAAGAAGGAAGGGTAC-ACTGGAAGAAGCAT  1098
      |||||||||||||||| |||||||| ||||||||| ||||| || |||||
seq2  CGCAGATTGTCTATAG-CCGAAGAA-GAAGGGTACAACTGGGAG-AGCAT  1095

seq1  GGACTAGAACTGCATGTTAATGCACATCAATTGAAAAATTGTGAAAAGCT  1148
      | ||||| |||||||||| ||||||||||| |  ||| ||||| ||||| 
seq2  GAACTAG-ACTGCATGTT-ATGCACATCAAATTGAAATTTGTG-AAAGCC  1142

seq1  ATTT-AGAATTAATGATGATGAAAACATGTATTTG  1182
      |||| |||| || |||||||||||||||| |||||
seq2  ATTTCAGAA-TACTGATGATGAAAACATGCATTTG  1176

seq1: chr8_52335308_52335891
seq2: B6Ng01-221P03.g_657_1234 (reverse)

seq1  GAAGGATCAAGTTCTAGAATGAATAATTAATCATT-TATCAAATGCCTCC  49
      ||||||||||||||||||||  |||  | |||||| |  |||||||||||
seq2  GAAGGATCAAGTTCTAGAATTGATA--TTATCATTATTCCAAATGCCTCC  48

seq1  AAAAGGCAAGGTCAAAT--GTGATAGAAAGGATGAAAGCCATTAGAAGAT  97
       |||||| || ||||||  |  ||||||||||||||||||  ||||||| 
seq2  -AAAGGC-AGTTCAAATTGGATATAGAAAGGATGAAAGCCCATAGAAGA-  95

seq1  TGTTGATA-TGCACACTAATCCATTTCAGAAGTGTCAGTTTGCATTTGTT  146
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TGTTGATATTGCACACTAATCCA-TTCAGAAGTGTCAGTTTGCATTTGTT  144

seq1  AGTGGTTAGTCTAAGGAACCCTGCAGATGGCAGCTTTATCAGAAGATGCA  196
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGT-GTTAGTCTAAGGAACCCTGCAGAT-GCAGCTTTATCAGAAGATGCA  192

seq1  CTTTTCAACACCTCATAACTAGAGACCAAATAGGAAGAAAGCCACATAAT  246
      | |||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  C-TTTCAACA-CTCAT-ACTAGAGACCAAATAGGAAGAAAGCCACATAAT  239

seq1  GTAGAATAGATGAAATTCTCCTTTTTATCCTTGGGAGAGCCC-TTGTTAC  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAGAATAGATGAAATTCTCCTTTTTATCCTTGGGAGAGCCCTTTGTTAC  289

seq1  GTCTTTAAAGTGAACTAGGTAGATATTTTCCCACTTGTAATAGAATTCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAGTGAACTAGGTAGATATTTTCCCACTTGTAATAGAATTCAC  339

seq1  TAGCATTCTTCCATTATATAAATCGATATTTTATCTTCTTGCATCATAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCTTCCATTATATAAATCGATATTTTATCTTCTTGCATCATAAT  389

seq1  AGAAATTTTATCAAAGTTTAGGGGTAGCATGAATAGTCCAAATTTTCAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTATCAAAGTTTAGGGGTAGCATGAATAGTCCAAATTTTCAAT  439

seq1  ATAACTTCATACACAGCACTCCAAAGACATATAAGTTCCTTAAAATTTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCATACACAGCACTCCAAAGACATATAAGTTCCTTAAAATTTGA  489

seq1  TACATGGCCTTCCCCCATGATACGCCAGCTCTTACATTTTGTTTCTATCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCCTTCCCCCATGATACGCCAGCTCTTACATTTTGTTTCTATCT  539

seq1  TCCCCTGGTATGCTCCTTGAGTTTTGGTAGAAATGTGGG  584
      |||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGTATGCTCCTTGAGTTTTGGTAGAAATGTGGG  578