BAC Information

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BAC

Clone NameB6Ng01-222H23
Chromosome8 (Build37)
Map Location 96,292,230 - 96,396,654
singlet/doubletdoublet
Overlap geneGnao1
Upstream geneMmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneAmfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222H23.bB6Ng01-222H23.g
ACCGA037497GA037498
length1,190737
definitionB6Ng01-222H23.b B6Ng01-222H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,395,454 - 96,396,654)(96,292,230 - 96,292,961)
sequence
gaattcttttctgaaacatgaccagccagaagagtagaaagccatgcgga
ctatttcagaaggaaccaaagctgcccatagcgtttggccagcattttta
gggcataagatcatgatcaattcttttagatattacagtcatgagccctt
atgcctagcttaatttatgtggtgatttgaataaggatagctctcacagg
ctcacagatttgaatgcttggtcattagggagtggtgctaactgacaggg
attaggaggtgtggccttgttgaaggaagtgtgtcactggggatggactt
tagggtttcaaatgctcaagccaggcccagtgtccctctcttcctgctgc
cttcagatgtggaactttcaactacttcttcagcatcatgtctacctgtg
tactgccatgcttcctgccatgacaataatgaagtcaacctctgacactg
taagccagccccagttagatgctctccttcttaaggtttgctataatcat
ggtgtctcttcacagcaatagtgcactaaaacaatttaataatataggaa
caaggttcagtcatggcttacactaactgttccaaacatcagctctctta
tattcccagacattccatttatggaaaatatttagatgcaaacaacaaat
tcaccataacagatatcccaacatgggagaaatgagtgggtcaggatgca
gatgagtaaggatgtctgctcgccactcctctttcctaactctacatggg
cattgactcggctctgagagagcagccatacacagagactgtatacagaa
agggcacacggtggaaggcccagttctgctctgaatgttggttagatctc
caacatcatgggaaaaaaatgaaaagaaaaatatttagttcaaaaataag
aaacacactctggagaaacctagaatcaaaaaggaaaccaggaaagatat
ggaaaactatataagcatcataaaccacttccccagggtggacagcaagt
ttttcccagaggcatacacacaggagcaggagaacaccagatcacagaca
atcgctgtcaaaagcaaagcagatcaaaacagcaaaggagtggaggggcg
ttcataattgcaaaaggactaaaccaagcaaacacgtttattatgctgta
ggagaagacagcaggcagacatggcccaggaactcagagc
gaattcagaaaaaaaaataataaggaaaccgttgaggagatagcagagag
gagctcagaaaagactgcaagggaactgagagaaaaggaagctggaaatg
aaaaagaaacagatcgctccaagtaggaagaaggaaacaccctagtgctt
gccaaaggaaaggactgtgctgggtgtggatggcgtgccatagtcagcac
ccacccaccgggcatgcgcagggccctagcttcactgctcctcacctaaa
caaactgacaaatacttaacagtcggggtgggggtggagcctagtaggta
gacttcgtgccccgtgtgcataaagccctgggtttgattccccagcattg
catcaaccagaaagggtgggctttggatagcaagagctgctaaaatcatg
gtgcgaagtttcaacaagtaccacagctttgaggcagaaacaaggaaagt
ccacaacgcatttgcttgtctttgtttctggggcaggctgtcactgtgca
gcccaggcttgtctccagctcatggacctacttccatgctccctccctcc
ccccccccgccccccacccaggcgcgcacacaaacacacacacacacact
cacacacacacactactggaagtttggcacacaccaccgcacccagcttt
tcccaaaactccaaagaagagagagggggactgtcgttgcttacaatgtg
gtggtttaatagttgctttttcatcgctaaaatcgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96395454_96396654
seq2: B6Ng01-222H23.b_45_1234 (reverse)

seq1  GCTCT-TGTTCCT-GGCCTTGTTCTGCTTGCTGTCTTTCTCCTAACCACC  48
      |||||  |||||| |||| || ||||| ||||||| ||||||||  ||  
seq2  GCTCTGAGTTCCTGGGCCATG-TCTGCCTGCTGTC-TTCTCCTA--CA-G  45

seq1  CATAATAAACCTTGTTTTGCTTGGTTTAAGGTCTTTTGCATTTATGAACG  98
      |||||||||| |   |||||||||||| ||  |||||||| |||||||||
seq2  CATAATAAACGT--GTTTGCTTGGTTT-AGTCCTTTTGCAATTATGAACG  92

seq1  -CCCTCCACTCCTTTGCTGTTTTGAATCTTGCTTTGCTTTTGACAGCGTT  147
       ||||||||||||||||||||||| ||| ||||||||||||||||||| |
seq2  CCCCTCCACTCCTTTGCTGTTTTG-ATC-TGCTTTGCTTTTGACAGCGAT  140

seq1  TGTCTGTGATCTTGTGTTCTTCCTTGCTTCTTGTGTGTATTGCCTCTGGG  197
      |||||||||||| |||||||  | ||| || |||||||| ||||||||||
seq2  TGTCTGTGATCTGGTGTTCT--CCTGC-TCCTGTGTGTA-TGCCTCTGGG  186

seq1  AAAAACTTTGCTGTCCA-CCTGGGGAAGTGGTTTATGATGCTTATATAGT  246
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAAC-TTGCTGTCCACCCTGGGGAAGTGGTTTATGATGCTTATATAGT  235

seq1  TTTCCATATCTTTCCTGGTTTCCTTTTTGATTCTAGGTTTCTCCAGAGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATCTTTCCTGGTTTCCTTTTTGATTCTAGGTTTCTCCAGAGTG  285

seq1  TGTTTCTTATTTTTGAACTAAATATTTTTCTTTTCATTTTTTTCCCATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTATTTTTGAACTAAATATTTTTCTTTTCATTTTTTTCCCATGA  335

seq1  TGTTGGAGATCTAACCAACATTCAGAGCAGAACTGGGCCTTCCACCGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGATCTAACCAACATTCAGAGCAGAACTGGGCCTTCCACCGTGT  385

seq1  GCCCTTTCTGTATACAGTCTCTGTGTATGGCTGCTCTCTCAGAGCCGAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCTGTATACAGTCTCTGTGTATGGCTGCTCTCTCAGAGCCGAGT  435

seq1  CAATGCCCATGTAGAGTTAGGAAAGAGGAGTGGCGAGCAGACATCCTTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCATGTAGAGTTAGGAAAGAGGAGTGGCGAGCAGACATCCTTAC  485

seq1  TCATCTGCATCCTGACCCACTCATTTCTCCCATGTTGGGATATCTGTTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCATCCTGACCCACTCATTTCTCCCATGTTGGGATATCTGTTAT  535

seq1  GGTGAATTTGTTGTTTGCATCTAAATATTTTCCATAAATGGAATGTCTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTGTTGTTTGCATCTAAATATTTTCCATAAATGGAATGTCTGG  585

seq1  GAATATAAGAGAGCTGATGTTTGGAACAGTTAGTGTAAGCCATGACTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAGAGAGCTGATGTTTGGAACAGTTAGTGTAAGCCATGACTGAA  635

seq1  CCTTGTTCCTATATTATTAAATTGTTTTAGTGCACTATTGCTGTGAAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCCTATATTATTAAATTGTTTTAGTGCACTATTGCTGTGAAGAG  685

seq1  ACACCATGATTATAGCAAACCTTAAGAAGGAGAGCATCTAACTGGGGCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGATTATAGCAAACCTTAAGAAGGAGAGCATCTAACTGGGGCTG  735

seq1  GCTTACAGTGTCAGAGGTTGACTTCATTATTGTCATGGCAGGAAGCATGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTGTCAGAGGTTGACTTCATTATTGTCATGGCAGGAAGCATGG  785

seq1  CAGTACACAGGTAGACATGATGCTGAAGAAGTAGTTGAAAGTTCCACATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACAGGTAGACATGATGCTGAAGAAGTAGTTGAAAGTTCCACATC  835

seq1  TGAAGGCAGCAGGAAGAGAGGGACACTGGGCCTGGCTTGAGCATTTGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGCAGGAAGAGAGGGACACTGGGCCTGGCTTGAGCATTTGAAA  885

seq1  CCCTAAAGTCCATCCCCAGTGACACACTTCCTTCAACAAGGCCACACCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGTCCATCCCCAGTGACACACTTCCTTCAACAAGGCCACACCTC  935

seq1  CTAATCCCTGTCAGTTAGCACCACTCCCTAATGACCAAGCATTCAAATCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCTGTCAGTTAGCACCACTCCCTAATGACCAAGCATTCAAATCT  985

seq1  GTGAGCCTGTGAGAGCTATCCTTATTCAAATCACCACATAAATTAAGCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTGTGAGAGCTATCCTTATTCAAATCACCACATAAATTAAGCTA  1035

seq1  GGCATAAGGGCTCATGACTGTAATATCTAAAAGAATTGATCATGATCTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGGGCTCATGACTGTAATATCTAAAAGAATTGATCATGATCTTA  1085

seq1  TGCCCTAAAAATGCTGGCCAAACGCTATGGGCAGCTTTGGTTCCTTCTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAAAAATGCTGGCCAAACGCTATGGGCAGCTTTGGTTCCTTCTGA  1135

seq1  AATAGTCCGCATGGCTTTCTACTCTTCTGGCTGGTCATGTTTCAGAAAAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCGCATGGCTTTCTACTCTTCTGGCTGGTCATGTTTCAGAAAAG  1185

seq1  AATTC  1201
      |||||
seq2  AATTC  1190

seq1: chr8_96292230_96292961
seq2: B6Ng01-222H23.g_67_803

seq1  GAATTCAGAAAAAAAAATAATAAGGAAACCGTTGAGGAGATAGCAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAAAAAATAATAAGGAAACCGTTGAGGAGATAGCAGAGAG  50

seq1  GAGCTCAGAAAAGACTGCAAGGGAACTGAGAGAAAAGGAAGCTGGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAAAAGACTGCAAGGGAACTGAGAGAAAAGGAAGCTGGAAATG  100

seq1  AAAAAGAAACAGATCGCTCCAAGTAGGAAGAAGGAAACACCCTAGTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAACAGATCGCTCCAAGTAGGAAGAAGGAAACACCCTAGTGCTT  150

seq1  GCCAAAGGAAAGGACTGTGCTGGGTGTGGATGGCGTGCCATAGTCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGAAAGGACTGTGCTGGGTGTGGATGGCGTGCCATAGTCAGCAC  200

seq1  CCACCCACCGGGCATGCGCAGGGCCCTAGCTTCACTGCTCCTCACCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCGGGCATGCGCAGGGCCCTAGCTTCACTGCTCCTCACCTAAA  250

seq1  CAAACTGACAAATACTTAACAGTCGGGGTGGGGGTGGAGCCTAGTAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGACAAATACTTAACAGTCGGGGTGGGGGTGGAGCCTAGTAGGTA  300

seq1  GACTTCGTGCCCCGTGTGCATAAAGCCCTGGGTTTGATTCCCCAGCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGTGCCCCGTGTGCATAAAGCCCTGGGTTTGATTCCCCAGCATTG  350

seq1  CATCAACCAGAAAGGGTGGGCTTTGGATAGCAAGAGCTGCTAAAATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACCAGAAAGGGTGGGCTTTGGATAGCAAGAGCTGCTAAAATCATG  400

seq1  GTGCGAAGTTTCAACAAGTACCACAGCTTTGAGGCAGAAACAAGGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAAGTTTCAACAAGTACCACAGCTTTGAGGCAGAAACAAGGAAAGT  450

seq1  CCACAACGCATTTGCTTGTCTTTGTTTCTGGGGCAGGCTGTCACTGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACGCATTTGCTTGTCTTTGTTTCTGGGGCAGGCTGTCACTGTGCA  500

seq1  GCCCAGGCTTGTCTCCAGCTCATGGACCTACTTCCATGCTCCCTCCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTTGTCTCCAGCTCATGGACCTACTTCCATGCTCCCTCCCTCC  550

seq1  CCCCCCCCGCCCCCCACCCAGGCGCGCACACAAACACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCCCCCCGCCCCCCACCCAGGCGCGCACACAAACACACACACACACACT  600

seq1  CACACACACACACTACTGGAAGTTTGGCACACACCACCGCACCCAGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTACTGGAAGTTTGGCACACACCACCGCACCCAGCTTT  650

seq1  --CCCAAACTCCAAAGAAGAGAGA-GGGGACTGTCGTTAGCTTACAATGT  697
        || ||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TCCCAAAACTCCAAAGAAGAGAGAGGGGGACTGTCGTT-GCTTACAATGT  699

seq1  -GTGTTTTAATAGTTGC-TTTTCATCGCT-AAATCGAT  732
       ||| |||||||||||| ||||||||||| ||||||||
seq2  GGTGGTTTAATAGTTGCTTTTTCATCGCTAAAATCGAT  737