BAC Information

Click to search

BAC

Clone NameB6Ng01-223C07
Chromosome8 (Build37)
Map Location 41,506,331 - 41,648,855
singlet/doubletdoublet
Overlap geneZdhhc2, Cnot7, Vps37a, Mtmr7
Upstream geneLOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik
Downstream geneLOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223C07.bB6Ng01-223C07.g
ACCGA037971GA037972
length1,1391,031
definitionB6Ng01-223C07.b B6Ng01-223C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,506,331 - 41,507,464)(41,647,834 - 41,648,855)
sequence
gaattccagaggaaagctggtcaagaatctttcctagagccaagatctgg
ccataggaatcttgtagttttaaaaaagaatgtctctgagaggtagtgct
atttcataaacttttgagtagagcagagactccaggagaggctttgctgg
gatggtcttaccaccatttgaaccaggatagacaggttctcctccaaaac
aacttcctctcaccttcttctgcctgactttactcacccagagttccttg
aaatcttttaaaagataactaatacttagagttgaaatgtaggtagctct
gtggagagtaaatttcttgtgaatggtgtacagcgttcaatccattgtcc
tgctgaaagggggatcaaaggctgtctgtccctgagcatgcaggtcatcc
ttccaggctcacgagagtgtggtgtctagcacgggctcactgaccaaaga
gcttgcattcagctatgcgggtttgcgcctgtccaattagaggccaggct
gagataaatcccatcatcgtgtggcttcagacatgattcttcctgccttc
ctgcgctagacagtttcggagatgacagtgagcagtcagcaactcagtta
acagtaccgttagtgcggcaaagagttgaaaatccttcacaaatatcgta
agtgtgaacaatgggtgttctagtaataaagcgtgatgataaagtaataa
aaatctggcctataaaggtgttaaacctgcatacagcttatattgaaagc
tgagtaggatgtttgctcctcctggctgacctcaagccctgaaggactat
ggaggatggtacaggtgtcagtgggtatctgaagggcacagtggcactcc
caggattgagggtggggtcgacctcctttgagtcttcagtaatgtccatt
catcttcaccagcagctagctcatctttacgaggtatcttggttctgata
tgggaatcacaagctgccccccccctttggtctcattatttttatgaatt
ggaaagtgggtagagatatattgaatccaccgtcttcaaacatgctaaac
acgtgaacagggggagctacccctcgaatcctattctaatcttgttaaga
tgtgagctgatttctaggggagggagcctaaggaatagc
gaattcctcttagatttctgcctagagagaaccatgactttgtgacggtg
atgctgtttattagctattcatccttgtttagtgcctggcattgtgctgt
ggatgcagtagtaagcagtatgaagtcaagcctcttacttacacgagtga
cacacacacacacactcactctcactaatgataaatgctacataatcact
gtctttcccagtgcaagacagctgaagatgcacataagtgagaacagata
gaaattctttcatgctgggcaatggtggcacacgcctttaatcgcagcac
tcgggaggtagagacatgcggatttcttgagtttgaggccagcctggtct
acagagtgagttccaggacagccagggctacacagagaaaccctgtctcg
gaaaactaaaaaagaaaaagaaaagaaattctttcatacagttcctgaca
tagtcttttaccttctcttcatctgaacatattactggcccttttctttt
tatctgcaactttataatttgataaattagaatttatgtacatttccatt
ttagaagaggcctgtagaaaccccagaatttcagtaagatttgtgttgca
ggtgaggtggggacaggtcataaaggtgtgttacatagttcatatagtag
tacatttgttaatttgtggtgatttgaatgttggctttgaaatgtaatga
gaaagaaaaactctctgctagttctaagaaggctgggcctaagtgctgat
tgtgagttctcttagtctgtagccaaacctaatggtcacagtgactgtca
tttcaggcagtttcagaggaaggggcaagtgtgctttgtttcactgtttc
tgacggctgggacagaacggcccagtgtgctcggtggctagcctgctgct
ggacccttactaccggactctgaaaggattcatggtgagtctggcgagac
ctttcctgactcaggcagacccttgaccagccagtgcactttcattttta
gaatcttgttcacctgttttttttggtctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_41506331_41507464
seq2: B6Ng01-223C07.b_46_1184

seq1  GAATTCCAGAGGAAAGCTGGTCAAGAATCTTTCCTAGAGCCAAGATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGAAAGCTGGTCAAGAATCTTTCCTAGAGCCAAGATCTGG  50

seq1  CCATAGGAATCTTGTAGTTTTAAAAAAGAATGTCTCTGAGAGGTAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGAATCTTGTAGTTTTAAAAAAGAATGTCTCTGAGAGGTAGTGCT  100

seq1  ATTTCATAAACTTTTGAGTAGAGCAGAGACTCCAGGAGAGGCTTTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAAACTTTTGAGTAGAGCAGAGACTCCAGGAGAGGCTTTGCTGG  150

seq1  GATGGTCTTACCACCATTTGAACCAGGATAGACAGGTTCTCCTCCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTTACCACCATTTGAACCAGGATAGACAGGTTCTCCTCCAAAAC  200

seq1  AACTTCCTCTCACCTTCTTCTGCCTGACTTTACTCACCCAGAGTTCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTCTCACCTTCTTCTGCCTGACTTTACTCACCCAGAGTTCCTTG  250

seq1  AAATCTTTTAAAAGATAACTAATACTTAGAGTTGAAATGTAGGTAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTAAAAGATAACTAATACTTAGAGTTGAAATGTAGGTAGCTCT  300

seq1  GTGGAGAGTAAATTTCTTGTGAATGGTGTACAGCGTTCAATCCATTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGTAAATTTCTTGTGAATGGTGTACAGCGTTCAATCCATTGTCC  350

seq1  TGCTGAAAGGGGGATCAAAGGCTGTCTGTCCCTGAGCATGCAGGTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAGGGGGATCAAAGGCTGTCTGTCCCTGAGCATGCAGGTCATCC  400

seq1  TTCCAGGCTCACGAGAGTGTGGTGTCTAGCACGGGCTCACTGACCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCTCACGAGAGTGTGGTGTCTAGCACGGGCTCACTGACCAAAGA  450

seq1  GCTTGCATTCAGCTATGCGGGTTTGCGCCTGTCCAATTAGAGGCCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATTCAGCTATGCGGGTTTGCGCCTGTCCAATTAGAGGCCAGGCT  500

seq1  GAGATAAATCCCATCATCGTGTGGCTTCAGACATGATTCTTCCTGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAATCCCATCATCGTGTGGCTTCAGACATGATTCTTCCTGCCTTC  550

seq1  CTGCGCTAGACAGTTTCGGAGATGACAGTGAGCAGTCAGCAACTCAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCTAGACAGTTTCGGAGATGACAGTGAGCAGTCAGCAACTCAGTTA  600

seq1  ACAGTACCGTTAGTGCGGCAAAGAGTTGAAAATCCTTCACAAATATCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACCGTTAGTGCGGCAAAGAGTTGAAAATCCTTCACAAATATCGTA  650

seq1  AGTGTGAACAATGGGTGTTCTAGTAATAAAGCGTGATGATAAAGTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAACAATGGGTGTTCTAGTAATAAAGCGTGATGATAAAGTAATAA  700

seq1  AAATCTGGCCTATAAAGGTGTTAAACCTGCATACAGCTTATATTGAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGCCTATAAAGGTGTTAAACCTGCATACAGCTTATATTGAAAGC  750

seq1  TGAGTAGGATGTTTGCTCCTCCTGGCTGACCTCAAGCCCTGAAGGACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGATGTTTGCTCCTCCTGGCTGACCTCAAGCCCTGAAGGACTAT  800

seq1  GGAGGATGGTACAGGTGTCAGTGGGTATCTGAAGGGCACAGTGGCACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGTACAGGTGTCAGTGGGTATCTGAAGGGCACAGTGGCACTCC  850

seq1  CAGGATTGAGGGTGGGGTCGACCTCCTTTGAGTCTTCAGTAATGTCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGAGGGTGGGGTCGACCTCCTTTGAGTCTTCAGTAATGTCCATT  900

seq1  CATCTTCACCAGCAGCTAGCTCATCTTTACGAGGTATCTTGGTTCTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCACCAGCAGCTAGCTCATCTTTACGAGGTATCTTGGTTCTGATA  950

seq1  TGGGAATCACAAGCTGCCCCCCCCCTTTGGTCTCATTA-TTTTATGAATT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGAATCACAAGCTGCCCCCCCCCTTTGGTCTCATTATTTTTATGAATT  1000

seq1  GG-AAGTTGGTAGAG-GATATTGAATCCACGGTC-TCAAACATGCTAAAC  1046
      || |||| |||||||  ||||||||||||| ||| |||||||||||||||
seq2  GGAAAGTGGGTAGAGATATATTGAATCCACCGTCTTCAAACATGCTAAAC  1050

seq1  ACGTGGACA-GGGGAGCTACCCCCTCGATTCCTTATTCTAATCTGGTTAA  1095
      ||||| ||| ||||||||| |||||||| ||| ||||||||||| |||||
seq2  ACGTGAACAGGGGGAGCTA-CCCCTCGAATCC-TATTCTAATCTTGTTAA  1098

seq1  GATGTGAAGCTGATTTCTAGGGGA-GGAG-CTAAGG-ATAGC  1134
      |||||| ||||||||||||||||| |||| |||||| |||||
seq2  GATGTG-AGCTGATTTCTAGGGGAGGGAGCCTAAGGAATAGC  1139

seq1: chr8_41647834_41648855
seq2: B6Ng01-223C07.g_66_1095 (reverse)

seq1  TAGAC---AAAAAAAAGGTG-ACAAGATTCTAAAAATG-AAGTGCACT-G  44
      |||||   |||||| ||||| ||||||||||||||||| ||||||||| |
seq2  TAGACCAAAAAAAACAGGTGAACAAGATTCTAAAAATGAAAGTGCACTGG  50

seq1  CTGGTCAAGGGTCTGCCTGAGTCAGGAAGGTTCTCGCCAGACTCACCATG  94
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  CTGGTCAAGGGTCTGCCTGAGTCAGGAAAGGTCTCGCCAGACTCACCATG  100

seq1  AATCCTTTCAGAGTCCGGTAGTAAGGGTCCAGCAGCAGGCTAGCCACCGA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTCAGAGTCCGGTAGTAAGGGTCCAGCAGCAGGCTAGCCACCGA  150

seq1  GCACACCTGGGCCGTTCTGTCCCAGCCGTCAG-AACAGTGAA--CAAGCA  191
      ||||| |||||||||||||||||||||||||| |||||||||   |||||
seq2  GCACA-CTGGGCCGTTCTGTCCCAGCCGTCAGAAACAGTGAAACAAAGCA  199

seq1  CACTTGCCCCTTCCTCTGAAACTGCCTGAAATGACAGTCACTGTGACCAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCCCTTCCTCTGAAACTGCCTGAAATGACAGTCACTGTGACCAT  249

seq1  TAGGTTTGGCTACAGACTAAGAGAACTCACAATCAGCACTTAGGCCCAGC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTGGCTACAGACTAAGAGAACTCACAATCAGCACTTAGGCCCAGC  299

seq1  CTTCTTAGAACTAGCAGAGAGTTTTTCTTTCTCATTACATTTCAAAGCCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGAACTAGCAGAGAGTTTTTCTTTCTCATTACATTTCAAAGCCA  349

seq1  ACATTCAAATCACCACAAATTAACAAATGTACTACTATATGAACTATGTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAAATCACCACAAATTAACAAATGTACTACTATATGAACTATGTA  399

seq1  ACACACCTTTATGACCTGTCCCCACCTCACCTGCAACACAAATCTTACTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTTTATGACCTGTCCCCACCTCACCTGCAACACAAATCTTACTG  449

seq1  AAATTCTGGGGTTTCTACAGGCCTCTTCTAAAATGGAAATGTACATAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGGGGTTTCTACAGGCCTCTTCTAAAATGGAAATGTACATAAAT  499

seq1  TCTAATTTATCAAATTATAAAGTTGCAGATAAAAAGAAAAGGGCCAGTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTATCAAATTATAAAGTTGCAGATAAAAAGAAAAGGGCCAGTAA  549

seq1  TATGTTCAGATGAAGAGAAGGTAAAAGACTATGTCAGGAACTGTATGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGATGAAGAGAAGGTAAAAGACTATGTCAGGAACTGTATGAAA  599

seq1  GAATTTCTTTTCTTTTTCTTTTTTAGTTTTCCGAGACAGGGTTTCTCTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTTTCTTTTTCTTTTTTAGTTTTCCGAGACAGGGTTTCTCTGT  649

seq1  GTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAA  699

seq1  CTCAAGAAATCCGCATGTCTCTACCTCCCGAGTGCTGCGATTAAAGGCGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAATCCGCATGTCTCTACCTCCCGAGTGCTGCGATTAAAGGCGT  749

seq1  GTGCCACCATTGCCCAGCATGAAAGAATTTCTATCTGTTCTCACTTATGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCATTGCCCAGCATGAAAGAATTTCTATCTGTTCTCACTTATGT  799

seq1  GCATCTTCAGCTGTCTTGCACTGGGAAAGACAGTGATTATGTAGCATTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCAGCTGTCTTGCACTGGGAAAGACAGTGATTATGTAGCATTTA  849

seq1  TCATTAGTGAGAGTGAGTGTGTGTGTGTGTGTCACTCGTGTAAGTAAGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTGAGAGTGAGTGTGTGTGTGTGTGTCACTCGTGTAAGTAAGAG  899

seq1  GCTTGACTTCATACTGCTTACTACTGCATCCACAGCACAATGCCAGGCAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACTTCATACTGCTTACTACTGCATCCACAGCACAATGCCAGGCAC  949

seq1  TAAACAAGGATGAATAGCTAATAAACAGCATCACCGTCACAAAGTCATGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGGATGAATAGCTAATAAACAGCATCACCGTCACAAAGTCATGG  999

seq1  TTCTCTCTAGGCAGAAATCTAAGAGGAATTC  1022
      |||||||||||||||||||||||||||||||
seq2  TTCTCTCTAGGCAGAAATCTAAGAGGAATTC  1030