BAC Information

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BAC

Clone NameB6Ng01-223C16
Chromosome8 (Build37)
Map Location 53,558,513 - 53,559,712
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223C16.bB6Ng01-223C16.g
ACCGA037987GA037988
length1,1811,161
definitionB6Ng01-223C16.b B6Ng01-223C16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgttttcctttcacatcctcagatttaaaaactgtcaatgtgc
tcagcattaattatccaaatattctcgctgacattttatgcatcagtgat
agtccaaagcttccacaagaagaatgcaaaattaagcttttctatataaa
tggattgagtttaaaaaaagtacaaatagaaagaaaaaaaacaacaacaa
ctggagaaaactggaaaatattcttttttaaattgattttttaaaatttc
agatatagtattactgtgtctttaatgactaatttctatgcagttgttta
taatgccaatggcatctgctaataaaaatatataatatcccttaaggttt
attaggaagctaagttagggaacgctgtcattcttcattccttgaaccgc
agttcttctgcccagtcctatcttttaataaactttaatgcatgcatcca
aatgcttttccttgagaagcattgccgcaagacttgaattcctgcatcga
aatctactactgatatgtcttttctcaacccaaaccatgtttatggtgta
acaaacaagatattctctaacccattttctatacatttaatggcaacaag
tatatatgtataaatataatctgtaatttcaaataattagtttaatgaaa
aaagactgttcaaaatttattcatttgtatttatattatcagtatatgat
aaaatataaatctctaaaattactaaccattctttgtcttgtacatgaac
aaagttcaaagttacatgaactacttcaagaaatgatgcaatggtttctt
gattagaacattgatatacacctgtttccaaactctggttagtcagaaag
aaagttttagccttgtttcaagagatttaaatatgatccagcctgctgag
aagggaaagtgggttaaaagacatgctaagggaagttcccaatgtacaga
aaatagctcacaatggatatacattgtattcctttttgtatgaattttgg
agagtgtactttagcagtgaatgctgagatatctgtctgctgtatcacag
agatgataactgcagcatttattagtatgattatgtactatcacgaaaca
gcacactgttcttgacttgtcatcaatattagagccagctgactggaaag
accttaagcctgatggagggccatggtatgc
gaattcagtgtgggttagggtaggggaatttttctaagaattgttatttt
tgttatggttatttctctgagaacagctagtattgttttggcagctgtag
gcttaatcattttgactgctaaaactatgtttttacatttgttttgtcag
ccaactttcttatctgactctgtacttggcctgctagtacagtttggaaa
gtctttttccaagggagaaggtactgggtggtcttgaattcattttggat
attacactagcaactaactagaataaatgctgagattcaaagagaaactt
tagaaggagcttggaaagtcttgtggaagagtttgggaatggattaagaa
acccatgggcaataggagctcaacaagagaccaacagtgtcaactaactg
atacacttgtaggctcccagagactgaaccactaaccaaagagcatacaa
atgctagacctaggctctggcacatatgtagcagatgtgcagcttggtct
tcatgtggtctcacaacagtagggcttaccctgactctgttgtgtgcctg
tggatcctgcttgcataaatgggctgaacagtctggcctcagtgggagag
gatgtacctagtcctgcaattatttgaggtgccatggcaggctgttatcc
aggaggatcttttcccttctcagagttgaaggggaaggataagggaaggg
atattaagatgaagaacttgaaggagaggaaggctgtgatcaggatgtaa
agttaataaataaataaataaataaataaatgaatgaatgaataaataaa
taaataattaaatgggaaaaatcttggggcaggaattgattcaaagatat
ggaaatgttacctactggccttgttccctgtgggcctgctcattgtactt
tattcaaatacccagaacaccttgccaatgaaggtattgccctatacttg
tctggtccctttctcatgaatcattatcataaaacatccacacagagtgc
catagccaatctaaacaggaattgtttcagttgtgcttcttctttccatt
atatgccagcctgtatcacatgacgaaaaatatattctaccaattcagaa
ttttgatgccatgtttctttacagatgcagcccaattttttaaacaccta
atgccactcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_53558513_53559712
seq2: B6Ng01-223C16.b_43_1223

seq1  GAATTCTTGTTTTCCTTTCACATCCTCAGATTTAAAAACTGTCAATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTTCCTTTCACATCCTCAGATTTAAAAACTGTCAATGTGC  50

seq1  TCAGCATTAATTATCCAAATATTCTCGCTGACATTTTATGCATCAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTAATTATCCAAATATTCTCGCTGACATTTTATGCATCAGTGAT  100

seq1  AGTCCAAAGCTTCCACAAGAAGAATGCAAAATTAAGCTTTTCTATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAGCTTCCACAAGAAGAATGCAAAATTAAGCTTTTCTATATAAA  150

seq1  TGGATTGAGTTTAAAAAAAGTACAAATAGAAAGAAAAAAAACAACAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGAGTTTAAAAAAAGTACAAATAGAAAGAAAAAAAACAACAACAA  200

seq1  CTGGAGAAAACTGGAAAATATTCTTTTTTAAATTGATTTTTTAAAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAAACTGGAAAATATTCTTTTTTAAATTGATTTTTTAAAATTTC  250

seq1  AGATATAGTATTACTGTGTCTTTAATGACTAATTTCTATGCAGTTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGTATTACTGTGTCTTTAATGACTAATTTCTATGCAGTTGTTTA  300

seq1  TAATGCCAATGGCATCTGCTAATAAAAATATATAATATCCCTTAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAATGGCATCTGCTAATAAAAATATATAATATCCCTTAAGGTTT  350

seq1  ATTAGGAAGCTAAGTTAGGGAACGCTGTCATTCTTCATTCCTTGAACCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAGCTAAGTTAGGGAACGCTGTCATTCTTCATTCCTTGAACCGC  400

seq1  AGTTCTTCTGCCCAGTCCTATCTTTTAATAAACTTTAATGCATGCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTGCCCAGTCCTATCTTTTAATAAACTTTAATGCATGCATCCA  450

seq1  AATGCTTTTCCTTGAGAAGCATTGCCGCAAGACTTGAATTCCTGCATCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTCCTTGAGAAGCATTGCCGCAAGACTTGAATTCCTGCATCGA  500

seq1  AATCTACTACTGATATGTCTTTTCTCAACCCAAACCATGTTTATGGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTACTGATATGTCTTTTCTCAACCCAAACCATGTTTATGGTGTA  550

seq1  ACAAACAAGATATTCTCTAACCCATTTTCTATACATTTAATGGCAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAGATATTCTCTAACCCATTTTCTATACATTTAATGGCAACAAG  600

seq1  TATATATGTATAAATATAATCTGTAATTTCAAATAATTAGTTTAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATAAATATAATCTGTAATTTCAAATAATTAGTTTAATGAAA  650

seq1  AAAGACTGTTCAAAATTTATTCATTTGTATTTATATTATCAGTATATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTTCAAAATTTATTCATTTGTATTTATATTATCAGTATATGAT  700

seq1  AAAATATAAATCTCTAAAATTACTAACCATTCTTTGTCTTGTACATGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATCTCTAAAATTACTAACCATTCTTTGTCTTGTACATGAAC  750

seq1  AAAGTTCAAAGTTACATGAACTACTTCAAGAAATGATGCAATGGTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAAAGTTACATGAACTACTTCAAGAAATGATGCAATGGTTTCTT  800

seq1  GATTAGAACATTGATATACACCTGTTTCCAAACTCTGGTTAGTCAGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAACATTGATATACACCTGTTTCCAAACTCTGGTTAGTCAGAAAG  850

seq1  AAAGTTTTAGCCTTGTTTCAAGAGATTTAAATATGATCCAGCCTGCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAGCCTTGTTTCAAGAGATTTAAATATGATCCAGCCTGCTGAG  900

seq1  AAGGGAAAGTGGGTTAAAAGACATGCTAAGGGAAGTTCCCAATGTACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAGTGGGTTAAAAGACATGCTAAGGGAAGTTCCCAATGTACAGA  950

seq1  AAATAGCTCACAATGGATATACATTGTATTCCTTTTTGTATGAAATTTTG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAATAGCTCACAATGGATATACATTGTATTCCTTTTTGTATG-AATTTTG  999

seq1  GAAGAAGTGTACTTTAGCAGTGAATGCTGAGGATATCCTGTCTGCTGTAT  1050
      ||   ||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GA--GAGTGTACTTTAGCAGTGAATGCTGA-GATAT-CTGTCTGCTGTAT  1045

seq1  CACCAGAGAAGGATAACTGCAAGCATTTATTAGGTATGATTATGTACTAT  1100
      || ||||| | ||||||||| ||||||||||| |||||||||||||||||
seq2  CA-CAGAG-ATGATAACTGC-AGCATTTATTA-GTATGATTATGTACTAT  1091

seq1  CAACAGAAACAGCACACTGTTCTTGACTTGTCATCAAAATATTAGAAGGC  1150
      ||   ||||||||||||||||||||||||||||||  |||||||||  ||
seq2  CA--CGAAACAGCACACTGTTCTTGACTTGTCATC--AATATTAGA--GC  1135

seq1  ACAGCTGAAGTGAAAAAGACTTTTAGCTGAATGAAAGGGCCATGGGATGC  1200
       |||||||   |  |||||| || |||   |||  |||||||||| ||||
seq2  -CAGCTGACTGG--AAAGACCTTAAGCCTGATG-GAGGGCCATGGTATGC  1181