BAC Information

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BAC

Clone NameB6Ng01-224C03
Chromosome8 (Build37)
Map Location 79,395,231 - 79,396,297
singlet/doubletsinglet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226, LOC384847
Downstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224C03.bB6Ng01-224C03.g
ACCGA038681GA038682
length1,2031,197
definitionB6Ng01-224C03.b B6Ng01-224C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatacatgcatagaatatattttgatcatattcagcccctattg
tcccacatacaactcctcccaaatctacctcccaaccctacccctgaaca
tggattaaaaaaaaaaacccaacccaaaccagtttatgttgtttatatac
tcagaggtgtgggcccatctattggagcattttctacccaccaagactta
taccactgacaaaaattggctctccctctgccagaactcatcagctatca
acatcccctcagctagggatggggagctcatggaccattattcctccagg
ctggagtattactgtatgtgcagcttatttatgtggattccagaataaaa
ttcaggttctcgtgcttacaaggaaagtactttaatgaatgagctatatc
tccagctctcacctgggatccttcctgcagcccattggtacctatccatc
caggagtgaggagatgagtagggttttagagagagagagagagagagaga
gagagagagagagagagagagaacatgtgtctaactacattacatagaaa
tcagtaagactgacagttatcaaaatattgtgacatagtaacatactgtt
ttattagtatattaagcaacaagatctagatgtaattagttaattctgta
agtttaaattagtgatgggctttaaagctttgagaatttccacatgtgta
atgtgacatgaaaacacacatgtgttctgcaaaaggcagagtgttgagtt
tgtcagttctcctctggtttattgcccacagccatcattaaggaaatgac
acatttcagttagatattaatgaaaatgaaagtgtaatagtttctttacc
caagttcatgaactcagaggaattttaggctctgcccctattgggagcct
agccaactctctcaaccaagttcaacagttccgtatgacaaagccgtcct
tatgacaaactaaacactaaaccaagtaattccagaaagttccgtttacc
aagttcatatctctgtctcaatctacccatctttatgtaaattcactgaa
tgtctgaagaaagatgggagtttaaatcctatttctgaaaccggatgctg
ggcaaattatttgcctttgcatcaagaaaatactgtgattcaccccatag
cgttgagtacggttatttcaccgttgcgatccctcatgtgtccgttcata
ctg
gaattcttgaccactttggtttatttaatttaaaatatatacttctgata
ccattgtcagatataaacatttgtctaagaatttttgaaaccagtttgtg
acttgctgttgaactttctttctggtatcctttttataaataaactttac
atgttaatactgtcgaatgtacccatctttgcttcctatcatatctgcac
tttctgtgtcatttagaaaaatttcttcctactccaagctttgaaaatat
tctgtgctttccttgaaaaactatagttttagccttttaatttgagttat
taatctacctgaaatctattttatttttgtttgtgacatagtaggtatac
tttttaatactccagctaattgttccagtatcttttgttacagaatttat
gtcctacactaatttatcatgagcgcctttttgtagctgttttattttgt
ttagtgtttgtttgatttgtctgtctgtatactaccacctccttgaattt
attaataaggttttacagtaagtcttgataacctgaaaaaagcaagtctt
ttttccttttttcctttttcaaaggatcttggcttatcacaatctttttt
cccagtatatgttggaatcttcttaatttggagtgtattcatacctctgt
ggttttaagcatttccattaatgaaaatcacatgtacctgaagagattcc
tttaacccattaccattcatgtatatcatgtctctggagagattccttta
accctttaccatccacgcctcacttttcagtatcacaataccccaggtga
tgtggaaagggcagagctgaggctatgcatatgcactgctctccattttc
actttcagtccagctaagctgaatatgctccaaatgtgacttaaaatgag
tgtggagctttaagaatgactgatgtcaagctgaagaagcaaggagaatt
tgaaataacagaatggctgaaatatgcactgaagagtacagttattagat
ttagagagttatgaaaagctcctaaacattacatggcagaacaaagaaaa
aaatattatccctcacttactgggagtatggaagttggcagacatatttt
attcattgcattcaataaaatttcatgggaggatctgtctattttcaagc
caatgttctgccttggggaagaataccaacctaaccaaggccgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79395231_79396297
seq2: B6Ng01-224C03.g_195_1261

seq1  TTTTTATAAATAAACTTTACATGTTAATACTGTCGAATGTACCCATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAAATAAACTTTACATGTTAATACTGTCGAATGTACCCATCTTT  50

seq1  GCTTCCTATCATATCTGCACTTTCTGTGTCATTTAGAAAAATTTCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATCATATCTGCACTTTCTGTGTCATTTAGAAAAATTTCTTCCT  100

seq1  ACTCCAAGCTTTGAAAATATTCTGTGCTTTCCTTGAAAAACTATAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGCTTTGAAAATATTCTGTGCTTTCCTTGAAAAACTATAGTTTT  150

seq1  AGCCTTTTAATTTGAGTTATTAATCTACCTGAAATCTATTTTATTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTAATTTGAGTTATTAATCTACCTGAAATCTATTTTATTTTTGT  200

seq1  TTGTGACATAGTAGGTATACTTTTTAATACTCCAGCTAATTGTTCCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACATAGTAGGTATACTTTTTAATACTCCAGCTAATTGTTCCAGTA  250

seq1  TCTTTTGTTACAGAATTTATGTCCTACACTAATTTATCATGAGCGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTACAGAATTTATGTCCTACACTAATTTATCATGAGCGCCTTT  300

seq1  TTGTAGCTGTTTTATTTTGTTTAGTGTTTGTTTGATTTGTCTGTCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTGTTTTATTTTGTTTAGTGTTTGTTTGATTTGTCTGTCTGTAT  350

seq1  ACTACCACCTCCTTGAATTTATTAATAAGGTTTTACAGTAAGTCTTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACCTCCTTGAATTTATTAATAAGGTTTTACAGTAAGTCTTGATA  400

seq1  ACCTGAAAAAAGCAAGTCTTTTTTCCTTTTTTCCTTTTTCAAAGGATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAAAAGCAAGTCTTTTTTCCTTTTTTCCTTTTTCAAAGGATCTT  450

seq1  GGCTTATCACAATCTTTTTTCCCAGTATATGTTGGAATCTTCTTAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATCACAATCTTTTTTCCCAGTATATGTTGGAATCTTCTTAATTTG  500

seq1  GAGTGTATTCATACCTCTGTGGTTTTAAGCATTTCCATTAATGAAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATTCATACCTCTGTGGTTTTAAGCATTTCCATTAATGAAAATCA  550

seq1  CATGTACCTGAAGAGATTCCTTTAACCCATTACCATTCATGTATATCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCTGAAGAGATTCCTTTAACCCATTACCATTCATGTATATCATG  600

seq1  TCTCTGGAGAGATTCCTTTAACCCTTTACCATCCACGCCTCACTTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGAGATTCCTTTAACCCTTTACCATCCACGCCTCACTTTTCAG  650

seq1  TATCACAATACCCCAGGTGATGTGG-AAGGGCAGAGCTGAGGCTATGCAT  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATCACAATACCCCAGGTGATGTGGAAAGGGCAGAGCTGAGGCTATGCAT  700

seq1  ATGCACTGCTCTCCATTTTCACTTTCAGTCCAGCTAAGCTGAATATGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGCTCTCCATTTTCACTTTCAGTCCAGCTAAGCTGAATATGCTC  750

seq1  CAAATGTGACTTAAAATGAGTGTGGAGCTTTAAGAATGACTGATGTCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGACTTAAAATGAGTGTGGAGCTTTAAGAATGACTGATGTCAAG  800

seq1  CTGAAGAAGCAAGGAGAATTTGAAATAAACAGAATGGCTGAAATATGCAA  849
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CTGAAGAAGCAAGGAGAATTTGAAAT-AACAGAATGGCTGAAATATGC-A  848

seq1  CTGAGGAAGTACAGTTATTAGATTTAAGAGAGTTATGAAAAGCTCCTAAA  899
      |||| | |||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGAAG-AGTACAGTTATTAGATTT-AGAGAGTTATGAAAAGCTCCTAAA  896

seq1  CATTACATGGCAAGAACAAAGAAAAAAATATTATCCCTCAC-TACTGGGA  948
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  CATTACATGGC-AGAACAAAGAAAAAAATATTATCCCTCACTTACTGGGA  945

seq1  GTAATGGAAGTTGGCAGACATA-TTTATTCA-TGCATTCAATAAATATTC  996
      || ||||||||||||||||||| |||||||| |||||||||||||  |||
seq2  GT-ATGGAAGTTGGCAGACATATTTTATTCATTGCATTCAATAAAATTTC  994

seq1  AT-GGAGGATCTGTC-ATTTTCCAGGCAATGTTCTGGCCCTGGGGAAGAA  1044
      || |||||||||||| |||||| || ||||||||| ||| ||||||||||
seq2  ATGGGAGGATCTGTCTATTTTCAAGCCAATGTTCT-GCCTTGGGGAAGAA  1043

seq1  TAACAAACTAACCAAGGCC-TCTG  1067
      || ||| |||||||||||| ||||
seq2  TACCAACCTAACCAAGGCCGTCTG  1067