BAC Information

Click to search

BAC

Clone NameB6Ng01-225D01
Chromosome8 (Build37)
Map Location 100,908,570 - 100,909,732
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225D01.bB6Ng01-225D01.g
ACCGA039447GA039448
length1,1911,158
definitionB6Ng01-225D01.b B6Ng01-225D01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaatgaaaacacagcataaacttattggactttgattta
actttggtaagtgatacctatcaagaaagttattacagataaagaaagca
gtgctaagaggaaagttcatagtgctaagtacttacataaagagatctta
agctagaatttaataacacacctgaaagctctagaataaaaagacataag
cacacccaagaggagtagatctcaagaaattatcaaactgagccctgaaa
atagaaacaaagataaaaaatacaaagaatcaattaaaggaagagttggt
tctttgggaaaatcaacaagataaataaataaacccttttccaaactaag
taaaaaacacagagagaatatcgaaattataaaatcagaaatgaagtgcg
taacatcacaatagacaccaaaatatacagtgaataatagggacacaatt
tataaccctatactctgccaaattagaaaacgtgaaataaatcgataact
tttttggtaggtatcacttataaaagttaaatcaacatcaaatgaacaat
ttaaattgacctacactcccagtaaaattgaagatataacttattaaaag
tcttccaatcaaataaacttcagggtcagagggatcgacgcagaattctg
gcacacaccaatactcctctaagtatgccacaaaagagaaacaggaggaa
tattgcccaatttattttatgaggcatcagttaccctgactcccaaacca
cattaagaatgaacaaagaatttcagactaatttgctttataaacttaga
tgaaaatatatttcatgaattgtttgcacactgcatccaagaacacataa
aaagcatcatccacaatgatcaagtaggcttcatccgagagatggttcaa
catatgaaaatcagtcaatacaaccctccatataaataaacttaaaggga
aacacacacacacacacacacacacacacacacacacacacacacacaca
cgatcatctcataaaatgctaaaatagccctttgccaatgccaacatcca
tatcttttagaaaaaatctactgagaagatttctgagtcaaaagatcctc
cctgctcatgatcagtagacactagcatagcaaattacatcgtactaaag
caatctgcagatcatttggcatctctccataaaaatttgct

gaattcatacttctgattttgcttttcaaataagcaagtagtgatatgga
atgtacacagcttcataaaaaacagccagagatataaaggcaattaaata
catgcattctgcattagaaactgagcccattatatcttccaaaataacct
tcttttcctcctggagccgtttagatttcagagtcagaatgcaaacattg
atgtttaaagccttttcaaacatatactaccaattaacacaggaaagcag
tagataattgattgatggttgacctttgagaactaatttggggaataaat
atggctgccgattaaaggatcaaatccaaatgcagcactagaaagtaaga
ttttacaatgctttattttggaaaacataaaaaataaaatcataccagta
attacaaagaaaggggatctttaaaagaattcttagaggatttggagact
gtcttatctaatttctttgcttcatagtcagggtaaatgatgcacggacc
agggaaatgtcatgtcacaaatcacattagtatttttttttctgagattt
aggtcctaaattaacacagaagaaaaattgataaaaattacaccatagaa
aaaattcttcagttcaatttattaaacatttaagtaccaaacaagtggaa
ggttgacagcatgcaaaggtttcctgtaaggaagacatatttatttaaga
tattatgatgagtatttaacaagtcagccaataattactgaattatagat
atctaactttttacctaaaagaattaatttagggaaaatgatgatcatgc
aagcaaaaccaggactgacatgtaatttaaaacaaagcaatcacagaatg
tttctgaggttagaattgatcatgtgaaatcaagagttataagacaaggt
tgaaaatactaaacattaaagttaagtgatataaatatatacagcataca
atagccacaaaattcttagctcttgatatcatccatgccaagaacagagg
ggatgatgagtaaatgtcaagtaatttgtaatttcctgggggttcacagc
atgggcaaaaatattctgcatgatactgtagagctgattgattcagaaac
tcacatgatggaaggagaaagtctagagtatcttctgagcctccacaatt
ggaatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_100908570_100909732
seq2: B6Ng01-225D01.g_63_1220

seq1  GAATTCATACTTCTGATTTTGCTTTTCAAATAAGCAAGTAGTGATATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTTCTGATTTTGCTTTTCAAATAAGCAAGTAGTGATATGGA  50

seq1  ATGTACACAGCTTCATAAAAAACAGCCAGAGATATAAAGGCAATTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACAGCTTCATAAAAAACAGCCAGAGATATAAAGGCAATTAAATA  100

seq1  CATGCATTCTGCATTAGAAACTGAGCCCATTATATCTTCCAAAATAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTCTGCATTAGAAACTGAGCCCATTATATCTTCCAAAATAACCT  150

seq1  TCTTTTCCTCCTGGAGCCGTTTAGATTTCAGAGTCAGAATGCAAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCCTGGAGCCGTTTAGATTTCAGAGTCAGAATGCAAACATTG  200

seq1  ATGTTTAAAGCCTTTTCAAACATATACTACCAATTAACACAGGAAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAAGCCTTTTCAAACATATACTACCAATTAACACAGGAAAGCAG  250

seq1  TAGATAATTGATTGATGGTTGACCTTTGAGAACTAATTTGGGGAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATTGATTGATGGTTGACCTTTGAGAACTAATTTGGGGAATAAAT  300

seq1  ATGGCTGCCGATTAAAGGATCAAATCCAAATGCAGCACTAGAAAGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCCGATTAAAGGATCAAATCCAAATGCAGCACTAGAAAGTAAGA  350

seq1  TTTTACAATGCTTTATTTTGGAAAACATAAAAAATAAAATCATACCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAATGCTTTATTTTGGAAAACATAAAAAATAAAATCATACCAGTA  400

seq1  ATTACAAAGAAAGGGGATCTTTAAAAGAATTCTTAGAGGATTTGGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGAAAGGGGATCTTTAAAAGAATTCTTAGAGGATTTGGAGACT  450

seq1  GTCTTATCTAATTTCTTTGCTTCATAGTCAGGGTAAATGATGCACGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATCTAATTTCTTTGCTTCATAGTCAGGGTAAATGATGCACGGACC  500

seq1  AGGGAAATGTCATGTCACAAATCACATTAGTATTTTTTTTTCTGAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGTCATGTCACAAATCACATTAGTATTTTTTTTTCTGAGATTT  550

seq1  AGGTCCTAAATTAACACAGAAGAAAAATTGATAAAAATTACACCATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTAAATTAACACAGAAGAAAAATTGATAAAAATTACACCATAGAA  600

seq1  AAAATTCTTCAGTTCAATTTATTAAACATTTAAGTACCAAACAAGTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTCAGTTCAATTTATTAAACATTTAAGTACCAAACAAGTGGAA  650

seq1  GGTTGACAGCATGCAAAGGTTTCCTGTAAGGAAGACATATTTATTTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACAGCATGCAAAGGTTTCCTGTAAGGAAGACATATTTATTTAAGA  700

seq1  TATTATGATGAGTATTTAACAAGTCAGCCAATAATTACTGAATTATAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATGAGTATTTAACAAGTCAGCCAATAATTACTGAATTATAGAT  750

seq1  ATCTAACTTTTTACCTAAAAGAATTAATTTAGGGAAAATGATGATCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACTTTTTACCTAAAAGAATTAATTTAGGGAAAATGATGATCATGC  800

seq1  AAGCAAAACCAGGACTGACATGTAATTTAAAACAAAGCAATCACAGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACCAGGACTGACATGTAATTTAAAACAAAGCAATCACAGAATG  850

seq1  TTTCTGAGGTTAGAATTGATCATGTGAAATCAAGAGTTATAAGACAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGTTAGAATTGATCATGTGAAATCAAGAGTTATAAGACAAGGT  900

seq1  TGAAAATACTAAACATTAAAGTTAAGTGATATAAATATATACAGCATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATACTAAACATTAAAGTTAAGTGATATAAATATATACAGCATACA  950

seq1  ATAGCCACAAAATTCTTAGCTCTTGATATCATCCATGCCAAGAACAGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACAAAATTCTTAGCTCTTGATATCATCCATGCCAAGAACAGAGG  1000

seq1  GGATGATGAGTAAAATGTCAAGTAAATTTGTAA-TTCCTGGGGGTTCACA  1049
      ||||||||||| ||||||||||| ||||||||| ||||||||||||||||
seq2  GGATGATGAGT-AAATGTCAAGT-AATTTGTAATTTCCTGGGGGTTCACA  1048

seq1  GCATGGGC-AAAATA-TCTGCCATGAATACTGTAGAGCTGATTTGATTCC  1097
      |||||||| |||||| |||| |||| ||||||||||||||| |||||| |
seq2  GCATGGGCAAAAATATTCTG-CATG-ATACTGTAGAGCTGA-TTGATT-C  1094

seq1  AGAAACTCAACATGATGGAAGGAGAGAGTCTAAGAAGTTATCTTCTGAG-  1146
      |||||||| |||||||||||||||| ||||| |||   ||||||||||| 
seq2  AGAAACTC-ACATGATGGAAGGAGAAAGTCT-AGA--GTATCTTCTGAGC  1140

seq1  CTCCAC-ATTTGAATCAT  1163
      |||||| ||| |||||||
seq2  CTCCACAATTGGAATCAT  1158


| Home | SequenceCutter | Blast | Download |