BAC Information

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BAC

Clone NameB6Ng01-225E09
Chromosome8 (Build37)
Map Location 9,617,337 - 9,747,916
singlet/doubletdoublet
Overlap geneTmem28
Upstream geneEfnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225E09.bB6Ng01-225E09.g
ACCGA039511GA039512
length6001,169
definitionB6Ng01-225E09.b B6Ng01-225E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,617,337 - 9,617,936)(9,746,741 - 9,747,916)
sequence
gaattcagtatctcagttgcaccaaaaattctacatcgatccacttgtta
ccataaatgtttagctgctgctattttcggtaagccttgtcatgaccaac
agacatgggacatgagctataaactggaacctgctttcaataattgctgt
gccctgggctgttctatgtcaacccccacacctgcccttcagcaattcct
tgatgtcttcactgcaaggtggttctttataaatcccccatagtcctcat
ggctccccagtaagaattatgctatttggcagttatacgtttgaatctac
agacagttgctctaatactgagaacacttttcttcctggcccaagtggtc
aactggcgagactccttggctgtctctagtgactatccaaatcttctgat
ggtgagaggggagggagagttttccttctacactgccctgttagaatccc
agccatttcccatacagcctcggtgaccaacccccttctctgtggctttc
ttaagatgttctcagtgaaggatttcctaagcacaaatgagtacccgatg
aagatgactgggcggccaactggtggatcctaatgagactgttgctcaaa


gaattcctaagtgttcttccaaactcagggagaccaggagtatttcgact
gtagatgtttattccttgtcaatatcctacactgttcattctccttctta
gattttatttatctttgttttatatgtatgggtgttttgccagcatgtat
gtctgtacaccatatgcatgcctggttcatgaggatggcagaagaatgtg
tcagataccctggaactggaattacagatggctgtgaactatgtggctgc
tgggacagaacccagatcctctggaagagtggacagcacttgaaattacc
aagccatctctccagccccaataatctatgccttttgtggaccgtaatgg
ttctcctgtctttttacacttgagactttctgaaagaacaatctcttcca
gagtgttttcaatcttgtggaagaatgaaaagagacacaggccatgactt
ggccctgagaaattcatttctgtaggatacagttccttgaggaattcctg
gcttcatatgcagaaggccctaggccccttctctagcaccacaagagtgc
aatgcatccaggtggatttctaatggccaacagttgcatctgcgtcttcc
agattttggagctgactttctagcgcagctctctccaggttttaacttcc
gatgtagatttagcataccgtgtgcaatggtctttcagtgcacttgtatg
taagtattaggaaaggatctgttgagtagtttccatttgaaagggttagt
ttgaatcctataaattaagaagagattccctggtgggcaaggaaatgcta
gcataatcagaagcactgccctccaagcacccaacgagtgctcttgaaga
gttgagggtgatccagctctgttcctcttcgttagccaatttagataaaa
ttctgctgggatcaaagtgtcaaatcttatgtgaattagaggaaaaagaa
tttcaaacagctccatcccttcattcgaaagtacatttttcctccattgt
cagaccattggtactgttgctttcttcaactcaaggctgatcatatatta
gttatattgatcgttgttatgagactgaagctgtttaacgccttggatga
atgaaaggagtatgaagaacgaagtcagtctgaacgctgaactcaggtat
tgttggaacggctctacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9617337_9617936
seq2: B6Ng01-225E09.b_48_647

seq1  GAATTCAGTATCTCAGTTGCACCAAAAATTCTACATCGATCCACTTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCTCAGTTGCACCAAAAATTCTACATCGATCCACTTGTTA  50

seq1  CCATAAATGTTTAGCTGCTGCTATTTTCGGTAAGCCTTGTCATGACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATGTTTAGCTGCTGCTATTTTCGGTAAGCCTTGTCATGACCAAC  100

seq1  AGACATGGGACATGAGCTATAAACTGGAACCTGCTTTCAATAATTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGGACATGAGCTATAAACTGGAACCTGCTTTCAATAATTGCTGT  150

seq1  GCCCTGGGCTGTTCTATGTCAACCCCCACACCTGCCCTTCAGCAATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGCTGTTCTATGTCAACCCCCACACCTGCCCTTCAGCAATTCCT  200

seq1  TGATGTCTTCACTGCAAGGTGGTTCTTTATAAATCCCCCATAGTCCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTCACTGCAAGGTGGTTCTTTATAAATCCCCCATAGTCCTCAT  250

seq1  GGCTCCCCAGTAAGAATTATGCTATTTGGCAGTTATACGTTTGAATCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCAGTAAGAATTATGCTATTTGGCAGTTATACGTTTGAATCTAC  300

seq1  AGACAGTTGCTCTAATACTGAGAACACTTTTCTTCCTGGCCCAAGTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTGCTCTAATACTGAGAACACTTTTCTTCCTGGCCCAAGTGGTC  350

seq1  AACTGGCGAGACTCCTTGGCTGTCTCTAGTGACTATCCAAATCTTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCGAGACTCCTTGGCTGTCTCTAGTGACTATCCAAATCTTCTGAT  400

seq1  GGTGAGAGGGGAGGGAGAGTTTTCCTTCTACACTGCCCTGGTAGAATCCC  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTGAGAGGGGAGGGAGAGTTTTCCTTCTACACTGCCCTGTTAGAATCCC  450

seq1  AGCCATTTCCCATACAGCCTCGGTGACCAACCCCCTTCTCTGTGGCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCCCATACAGCCTCGGTGACCAACCCCCTTCTCTGTGGCTTTC  500

seq1  TTAAGATGTTCTCAGTGAAGGATTTCCTAAGCACAAATGAGTACCCGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTTCTCAGTGAAGGATTTCCTAAGCACAAATGAGTACCCGATG  550

seq1  AAGATGACTGGGCGGCCAACTGGTGGATCCCAATGAGACTGTTGCTCAGA  600
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  AAGATGACTGGGCGGCCAACTGGTGGATCCTAATGAGACTGTTGCTCAAA  600


seq1: chr8_9746741_9747916
seq2: B6Ng01-225E09.g_66_1234 (reverse)

seq1  TAGTAGA-CTGTT-CAACAATAACTGAGTTCAGCTGTCAGAACTGACTTC  48
      ||||||| | ||| |||||||| |||||||||||  |||| |||||||||
seq2  TAGTAGAGCCGTTCCAACAATACCTGAGTTCAGCGTTCAG-ACTGACTTC  49

seq1  TGTCTTCATACTCTTTTCATCCATCACAAGCCGTTAAACCAGCTTCAGTC  98
        ||||||||||| |||||| |||| |||| ||||||| |||||||||||
seq2  GTTCTTCATACTCCTTTCATTCATC-CAAGGCGTTAAA-CAGCTTCAGTC  97

seq1  CTTTAATAACAACGATCATAATACACTAATTATATGAATCAGCCTTTGAG  148
         | |||||||||||||  ||| ||||| |||||| ||||||| |||||
seq2  ---TCATAACAACGATCAATATA-ACTAA-TATATG-ATCAGCC-TTGAG  140

seq1  TTGAGGAAAGCCAACAAGTACCAATGGTCTGACAATGGAG--AAAATGTA  196
      |||| ||||| |||| ||||||||||||||||||||||||  ||||||||
seq2  TTGAAGAAAG-CAAC-AGTACCAATGGTCTGACAATGGAGGAAAAATGTA  188

seq1  CTTTCGAATGAAGGGATGGAGCTGTTTGAAATTC-TTTTCCTCTAATTCA  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTCGAATGAAGGGATGGAGCTGTTTGAAATTCTTTTTCCTCTAATTCA  238

seq1  CATAAGATTTTGACACTTTGAT-CCAGCAGAATTTTATCTAAATTGGCTA  294
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CATAAGA-TTTGACACTTTGATCCCAGCAGAATTTTATCTAAATTGGCTA  287

seq1  ACGAAGAGGAACAGAGCTGGATCACCCTCAACTCTTCAAGAGCACTCGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGAGGAACAGAGCTGGATCACCCTCAACTCTTCAAGAGCACTCGTT  337

seq1  GGGTGCTTGGAGGGCAGTGCTTCTGATTATGCTAGCATTTCCTTGCCCAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTGGAGGGCAGTGCTTCTGATTATGCTAGCATTTCCTTGCCCAC  387

seq1  CAGGGAATCTCTTCTTAATTTATAGGATTCAAACTAACCCTTTCAAATGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATCTCTTCTTAATTTATAGGATTCAAACTAACCCTTTCAAATGG  437

seq1  AAACTACTCAACAGATCCTTTCCTAATACTTACATACAAGTGCACTGAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTCAACAGATCCTTTCCTAATACTTACATACAAGTGCACTGAAA  487

seq1  GACCATTGCACACGGTATGCTAAATCTACATCGGAAGTTAAAACCTGGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTGCACACGGTATGCTAAATCTACATCGGAAGTTAAAACCTGGAG  537

seq1  AGAGCTGCGCTAGAAAGTCAGCTCCAAAATCTGGAAGACGCAGATGCAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCGCTAGAAAGTCAGCTCCAAAATCTGGAAGACGCAGATGCAAC  587

seq1  TGTTGGCCATTAGAAATCCACCTGGATGCATTGCACTCTTGTGGTGCTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCATTAGAAATCCACCTGGATGCATTGCACTCTTGTGGTGCTAG  637

seq1  AGAAGGGGCCTAGGGCCTTCTGCATATGAAGCCAGGAATTCCTCAAGGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGCCTAGGGCCTTCTGCATATGAAGCCAGGAATTCCTCAAGGAA  687

seq1  CTGTATCCTACAGAAATGAATTTCTCAGGGCCAAGTCATGGCCTGTGTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCTACAGAAATGAATTTCTCAGGGCCAAGTCATGGCCTGTGTCT  737

seq1  CTTTTCATTCTTCCACAAGATTGAAAACACTCTGGAAGAGATTGTTCTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTCTTCCACAAGATTGAAAACACTCTGGAAGAGATTGTTCTTT  787

seq1  CAGAAAGTCTCAAGTGTAAAAAGACAGGAGAACCATTACGGTCCACAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTCTCAAGTGTAAAAAGACAGGAGAACCATTACGGTCCACAAAA  837

seq1  GGCATAGATTATTGGGGCTGGAGAGATGGCTTGGTAATTTCAAGTGCTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGATTATTGGGGCTGGAGAGATGGCTTGGTAATTTCAAGTGCTGT  887

seq1  CCACTCTTCCAGAGGATCTGGGTTCTGTCCCAGCAGCCACATAGTTCACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTCCAGAGGATCTGGGTTCTGTCCCAGCAGCCACATAGTTCACA  937

seq1  GCCATCTGTAATTCCAGTTCCAGGGTATCTGACACATTCTTCTGCCATCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGTAATTCCAGTTCCAGGGTATCTGACACATTCTTCTGCCATCC  987

seq1  TCATGAACCAGGCATGCATATGGTGTACAGACATACATGCTGGCAAAACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACCAGGCATGCATATGGTGTACAGACATACATGCTGGCAAAACA  1037

seq1  CCCATACATATAAAACAAAGATAAATAAAATCTAAGAAGGAGAATGAACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACATATAAAACAAAGATAAATAAAATCTAAGAAGGAGAATGAACA  1087

seq1  GTGTAGGATATTGACAAGGAATAAACATCTACAGTCGAAATACTCCTGGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGATATTGACAAGGAATAAACATCTACAGTCGAAATACTCCTGGT  1137

seq1  CTCCCTGAGTTTGGAAGAACACTTAGGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  CTCCCTGAGTTTGGAAGAACACTTAGGAATTC  1169


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