BAC Information

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BAC

Clone NameB6Ng01-225H11
Chromosome8 (Build37)
Map Location 104,242,608 - 104,386,185
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225H11.bB6Ng01-225H11.g
ACCGA039653GA039654
length1,2061,154
definitionB6Ng01-225H11.b B6Ng01-225H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,242,608 - 104,243,805)(104,385,015 - 104,386,185)
sequence
gaattctacactttcaaattaattcactgttttttctgtaaacttaattt
ttgtatgggacaggatgaaagatgaggtcattctctgaagagaagtagat
aggctaaaatttatttcagctgaggcacaataatatcaatgtacagacaa
cacacctgtgcaaattttagagctgtaattagaacgccgcatgcatgatt
cttagtttcagagtagaaatgctgtctgtctgctttcttccatataaaca
gtcccagaagcatctacaccagactgctactggaaagagaaataaatgag
aacaacaaatatttactacttattttagtttcgtgcaagcctggaaaata
tagtacacataaacacttactatttccctacaatgagatttcatttaaaa
tgctcacttacagatatataacgtcaccaaaatttcattcttagaaacaa
ttgaaaattagctggtcaagtactctgtgatctgcatcatcatgacttca
gcaatccataaaaccatttttctctaggaactattttagggattttagat
atatagtctaaaataaatcataatttttaacattaaaaaccacaatgaat
aattgcatttttctttcctttctttttaaaaatgaatacattgaatttgt
aacagtggttgaaactttccagatacacatgaaaatataaataatattgt
atatcatatataactatctattatgtcatatgtttttatgtatgtattca
ctcatctccatatatatgaatgtcatatttatatacataacttattaata
tatttgattaatttaatgatataattacatatattgcatctatgcacatg
tatatgtatgtgtgtgtatatatatgctactcacatatataatatcatgt
tggtgggtgtagtttcttataatcctcaaccaaggacaactccaacaact
tttaactacccatcaaagaactcaacagtaagtttttcatgcctggtact
ggttggttttgttagacattggctgctgtggggagaattgtcaactcact
tggtataacttcattgaattatattgcatgtattcttttatattagatgc
atatacacatacttttagcttactgaaatataatttttgcaaacgttaaa
aataaaacgagttctggcacttaattaggcatccatagttttattccgtc
ctcttc

gaattcatagttacacaaaccatatatatatatatatatatatatatata
tatatatatatatatatgaaaattgtacataataaaataatcacactcag
gatttctgtacttaatagagtcaagacaggagaagagaagattctgagat
gaaataaagatggaagcatgtcagaaaacttgagcaagtagacactgatg
gccagtcaagatgttcctggacatagtcacttcattaaatatatgaaaca
ttttaggtttccatgttttagtattatatttcagctaggaaccttaaaaa
gagagaaaaaatctctctgcaatgcctaatatcaggtatctgagagaata
agctgtgtgccttctttaggttaatacactgctggaaacgtaaggaatac
aaagaaaatgaaaaattctctaattccgtgagagaaagaaatagcaggca
aaagtataaaagcaagattcaatcaaaactgtcaatggagagtgggtcag
agaattgaatttctctcagaatgtgacatggcagctcaattctatttcag
ccgaaattgaaaagactatttgacttaagctgatatcttaattgtaatat
tgaacatcttctaaatataaactgcattaatttataccatgcctgaaaca
tcgctctatgagagtcagaaaacacagatttttctgtgaatataataacc
agttgtctctatagctctaactgtattctctgattgtggttgtttcttct
actggatatgtcatctgactaggtgttaaaggagttgtgaaagatatttt
tcataatagagatttaatggatactacacattcaacctgctatgtaccat
ttcttttcctatatacatgtttctgagaagattgttttcttctccatctt
atttaaagcagcaacttccctaataaaaaaaaaacaggcaatgaaacttg
aaggtccatctcaatgataaatattctctaacaaaattttttaagtgtct
catagaataaataaattctcgtccgttagcacggagagagatgatataga
gcaaagagtattccactgaatcgacttgtaagcagaaaatgtatgcatca
ctggccagattgggtgtgtgaggttataggcaagtgtatactgaacatct
atat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104242608_104243805
seq2: B6Ng01-225H11.b_42_1247

seq1  GAATTCTACACTTTCAAATTAATTCACTGTTTTTTCTGTAAACTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTTTCAAATTAATTCACTGTTTTTTCTGTAAACTTAATTT  50

seq1  TTGTATGGGACAGGATGAAAGATGAGGTCATTCTCTGAAGAGAAGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGGACAGGATGAAAGATGAGGTCATTCTCTGAAGAGAAGTAGAT  100

seq1  AGGCTAAAATTTATTTCAGCTGAGGCACAATAATATCAATGTACAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAATTTATTTCAGCTGAGGCACAATAATATCAATGTACAGACAA  150

seq1  CACACCTGTGCAAATTTTAGAGCTGTAATTAGAACGCCGCATGCATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGCAAATTTTAGAGCTGTAATTAGAACGCCGCATGCATGATT  200

seq1  CTTAGTTTCAGAGTAGAAATGCTGTCTGTCTGCTTTCTTCCATATAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCAGAGTAGAAATGCTGTCTGTCTGCTTTCTTCCATATAAACA  250

seq1  GTCCCAGAAGCATCTACACCAGACTGCTACTGGAAAGAGAAATAAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAAGCATCTACACCAGACTGCTACTGGAAAGAGAAATAAATGAG  300

seq1  AACAACAAATATTTACTACTTATTTTAGTTTCGTGCAAGCCTGGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAATATTTACTACTTATTTTAGTTTCGTGCAAGCCTGGAAAATA  350

seq1  TAGTACACATAAACACTTACTATTTCCCTACAATGAGATTTCATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACACATAAACACTTACTATTTCCCTACAATGAGATTTCATTTAAAA  400

seq1  TGCTCACTTACAGATATATAACGTCACCAAAATTTCATTCTTAGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTTACAGATATATAACGTCACCAAAATTTCATTCTTAGAAACAA  450

seq1  TTGAAAATTAGCTGGTCAAGTACTCTGTGATCTGCATCATCATGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTAGCTGGTCAAGTACTCTGTGATCTGCATCATCATGACTTCA  500

seq1  GCAATCCATAAAACCATTTTTCTCTAGGAACTATTTTAGGGATTTTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCATAAAACCATTTTTCTCTAGGAACTATTTTAGGGATTTTAGAT  550

seq1  ATATAGTCTAAAATAAATCATAATTTTTAACATTAAAAACCACAATGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCTAAAATAAATCATAATTTTTAACATTAAAAACCACAATGAAT  600

seq1  AATTGCATTTTTCTTTCCTTTCTTTTTAAAAATGAATACATTGAATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTTTTCTTTCCTTTCTTTTTAAAAATGAATACATTGAATTTGT  650

seq1  AACAGTGGTTGAAACTTTCCAGATACACATGAAAATATAAATAATATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGTTGAAACTTTCCAGATACACATGAAAATATAAATAATATTGT  700

seq1  ATATCATATATAACTATCTATTATGTCATATGTTTTTATGTATGTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATATATAACTATCTATTATGTCATATGTTTTTATGTATGTATTCA  750

seq1  CTCATCTCCATATATATGAATGTCATATTTATATACATAACTTATTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCCATATATATGAATGTCATATTTATATACATAACTTATTAATA  800

seq1  TATTTGATTAATTTAATGATATAATTACATATATTGCATCTATGCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTAATTTAATGATATAATTACATATATTGCATCTATGCACATG  850

seq1  TATATGTATGTGTGTGTATATATATGCTACTCACATATATAATATCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTGTGTGTATATATATGCTACTCACATATATAATATCATGT  900

seq1  TGGTGGGTGTAGTTTCTTATAATCCTCAACCAAGGACAACTCCAACAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTGTAGTTTCTTATAATCCTCAACCAAGGACAACTCCAACAACT  950

seq1  TTTAACTACCCATCAAAGAACTCAACAGTAAGTTTTTCATGCCTGGTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTACCCATCAAAGAACTCAACAGTAAGTTTTTCATGCCTGGTACT  1000

seq1  GG-TGGTTTTGTTAGACAATGGCTGCTGTGGGGAGAATTGTCAACTCACT  1049
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTTGGTTTTGTTAGACATTGGCTGCTGTGGGGAGAATTGTCAACTCACT  1050

seq1  TGGTATAACTTCATTGAA-TATA-TGCATGTAT--CTTTATA-TAGATGC  1094
      |||||||||||||||||| |||| |||||||||   |||||| |||||||
seq2  TGGTATAACTTCATTGAATTATATTGCATGTATTCTTTTATATTAGATGC  1100

seq1  ATATACACATACTTTTAGC-TACTG-AATATAATTTTTGGAAAACGT--A  1140
      ||||||||||||||||||| ||||| |||||||||||| | ||||||  |
seq2  ATATACACATACTTTTAGCTTACTGAAATATAATTTTT-GCAAACGTTAA  1149

seq1  AAATAAAAC-AGTTCCTTGGGCACTTATATA-GTATCATTAGTTTTATTC  1188
      ||||||||| |||||    ||||||||  || | |||  |||||||||||
seq2  AAATAAAACGAGTTC---TGGCACTTAATTAGGCATCCATAGTTTTATTC  1196

seq1  GGTCCTCTTC  1198
       |||||||||
seq2  CGTCCTCTTC  1206


seq1: chr8_104385015_104386185
seq2: B6Ng01-225H11.g_68_1221 (reverse)

seq1  ATATAAGATGTTCAGTAATACATTTGCCTTTATATAACTCTTCACACACA  50
      |||| ||||||||||| ||||| |||||    ||||||    ||||| ||
seq2  ATAT-AGATGTTCAGT-ATACACTTGCC----TATAACCTCACACACCCA  44

seq1  ATCCTGGCAGTGATTCCCATACATTTTCTGGCCTACCAAGTCGGATTTCA  100
      |||  | |||||||   |||||||||||||  ||  |||||||   ||||
seq2  ATCTGGCCAGTGAT--GCATACATTTTCTG--CTTACAAGTCG--ATTCA  88

seq1  GTGGAATTACTCTTTGCTCTATATCAATTCTCTCTCCGTTGCTAACGGAC  150
      |||||| |||||||||||||||||||  |||||||||| |||||||||||
seq2  GTGGAA-TACTCTTTGCTCTATATCA--TCTCTCTCCG-TGCTAACGGAC  134

seq1  GAGAATTTATTTATTCCTATGAGACACCTTAAAAAATTTTGTTAGAGAAT  200
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  GAGAATTTATTTATT-CTATGAGACA-CTTAAAAAATTTTGTTAGAGAAT  182

seq1  ATTTTATCATTGAGATGGACC-TCAAGTTTCATTGCCTG--TTTTTTTTA  247
      | ||||||||||||||||||| |||||||||||||||||  |||||||||
seq2  A-TTTATCATTGAGATGGACCTTCAAGTTTCATTGCCTGTTTTTTTTTTA  231

seq1  TTAGGGAAGTTGCTGCTTTAAATAAGATGGAGAAGAAAACAATCTTCTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAGTTGCTGCTTTAAATAAGATGGAGAAGAAAACAATCTTCTCA  281

seq1  GAAACATGTATATAGGAAAAAGAAATGGTACATAGCAGGTTGAATGTGTA  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAACATGTATATAGG-AAAAGAAATGGTACATAGCAGGTTGAATGTGTA  330

seq1  GTATCCATTAAATCTCTATTATGAAAAATATCTTTCACAACTCCTTTAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATTAAATCTCTATTATGAAAAATATCTTTCACAACTCCTTTAAC  380

seq1  ACCTAGTCAGATGACATATCCAGTAGAAGAAACAACCACAATCAGAGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTCAGATGACATATCCAGTAGAAGAAACAACCACAATCAGAGAAT  430

seq1  ACAGTTAGAGCTATAGAGACAACTGGTTATTATATTCACAGAAAAATCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGAGCTATAGAGACAACTGGTTATTATATTCACAGAAAAATCTG  480

seq1  TGTTTTCTGACTCTCATAGAGCGATGTTTCAGGCATGGTATAAATTAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGACTCTCATAGAGCGATGTTTCAGGCATGGTATAAATTAATG  530

seq1  CAGTTTATATTTAGAAGATGTTCAATATTACAATTAAGATATCAGCTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATATTTAGAAGATGTTCAATATTACAATTAAGATATCAGCTTAA  580

seq1  GTCAAATAGTCTTTTCAATTTCGGCTGAAATAGAATTGAGCTGCCATGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAGTCTTTTCAATTTCGGCTGAAATAGAATTGAGCTGCCATGTC  630

seq1  ACATTCTGAGAGAAATTCAATTCTCTGACCCACTCTCCATTGACAGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGAGAGAAATTCAATTCTCTGACCCACTCTCCATTGACAGTTTT  680

seq1  GATTGAATCTTGCTTTTATACTTTTGCCTGCTATTTCTTTCTCTCACGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATCTTGCTTTTATACTTTTGCCTGCTATTTCTTTCTCTCACGGA  730

seq1  ATTAGAGAATTTTTCATTTTCTTTGTATTCCTTACGTTTCCAGCAGTGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAATTTTTCATTTTCTTTGTATTCCTTACGTTTCCAGCAGTGTA  780

seq1  TTAACCTAAAGAAGGCACACAGCTTATTCTCTCAGATACCTGATATTAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTAAAGAAGGCACACAGCTTATTCTCTCAGATACCTGATATTAGG  830

seq1  CATTGCAGAGAGATTTTTTCTCTCTTTTTAAGGTTCCTAGCTGAAATATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGAGAGATTTTTTCTCTCTTTTTAAGGTTCCTAGCTGAAATATA  880

seq1  ATACTAAAACATGGAAACCTAAAATGTTTCATATATTTAATGAAGTGACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAACATGGAAACCTAAAATGTTTCATATATTTAATGAAGTGACT  930

seq1  ATGTCCAGGAACATCTTGACTGGCCATCAGTGTCTACTTGCTCAAGTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGAACATCTTGACTGGCCATCAGTGTCTACTTGCTCAAGTTTT  980

seq1  CTGACATGCTTCCATCTTTATTTCATCTCAGAATCTTCTCTTCTCCTGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGCTTCCATCTTTATTTCATCTCAGAATCTTCTCTTCTCCTGTC  1030

seq1  TTGACTCTATTAAGTACAGAAATCCTGAGTGTGATTATTTTATTATGTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTATTAAGTACAGAAATCCTGAGTGTGATTATTTTATTATGTAC  1080

seq1  AATTTTCATATATATATATATATATATATATATATATATATATATATATA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATATATATATATATATATATATATATATATATATATATATATA  1130

seq1  TATGGTTTGTGTAACTATGAATTC  1171
      ||||||||||||||||||||||||
seq2  TATGGTTTGTGTAACTATGAATTC  1154


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