BAC Information

Click to search

BAC

Clone NameB6Ng01-225N21
Chromosome8 (Build37)
Map Location 120,370,943 - 120,525,433
singlet/doubletdoublet
Overlap genenone
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225N21.bB6Ng01-225N21.g
ACCGA039953GA039954
length1,068219
definitionB6Ng01-225N21.b B6Ng01-225N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,370,943 - 120,372,011)(120,525,215 - 120,525,433)
sequence
gaattccccaacaaaggaacaggtctgagtctctgttccttcccagtgtc
agggccagtggaggttctgaggtcctgccgccataaggaaaaaatggagc
agaggcagcaagggcccagcaggaggactgggaaggacaaatagtgtgga
gttaccccaactgtagaatattcaggtaggaaggagcattagtatgtagc
ccacctcattttgtagaagcaacttaggcaacattagactattagtggcc
aagtggattctggaattgtgctcttctgtgccatgtctcgagtttctctt
accctggtctctgaatgtagaagacctgggccctgaagtcagctgtgcct
atggccttggttataggtttgtcaccaagccacctgggaagtgcaaataa
gtcggattcggaatgtatgcgagcggaagaggatgatggatgtggaaact
cctctccagctgtaaagcacacgcagaaaagatttccgctgtggaaacaa
aactgagtgtgctagccccgctggccctcctaaggtgcttttgtacgtgc
ctcgctgcgtgcacatacatatgtgtgtgtgtaggctcacggacaccaga
agttgatgtccttcagtccccacctcagcttttgagacaaggtttctcac
taaaccccgcacttactagttcagctagactggccgagcggcaagcccca
agcatgcctgtgtagaagttagccctggttcttcctcccagccctatagc
tctcagaaataagtctcagactgaaaacatattcacaaataccttggcca
tatagctacgctctactctgactggatcataacttaaaataaccgggttt
attctaatctacattctgccacgtggctggttacctgtgctcaggtagca
cacatcagtactgtcacattttcctgggccaatctcctgcctggcactat
cccagatcctttctgcctacaggatgtcccacctcctatttcctgcctag
ctataggccatctgatttgttatgacaggcgcctcatcatacagaacata
gaacgtttttttctacac
ccgtaatgatattttcagacatgtcctttcctcttcttatgtgactggta
aatatctctgctgatgtaagttataccccgcctgccaggcatggtggtgc
acgcctttaatcccagcactcaggagtcagaggcaggtggatctctggtc
tacagagagagttccagcgcaaccagggctgcacagaaagcccatcttgg
tggtggtggtggggttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120370943_120372011
seq2: B6Ng01-225N21.b_49_1116

seq1  GAATTCCCCAACAAAGGAACAGGTCTGAGTCTCTGTTCCTTCCCAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAACAAAGGAACAGGTCTGAGTCTCTGTTCCTTCCCAGTGTC  50

seq1  AGGGCCAGTGGAGGTTCTGAGGTCCTGCCGCCATAAGGAAAAAATGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGTGGAGGTTCTGAGGTCCTGCCGCCATAAGGAAAAAATGGAGC  100

seq1  AGAGGCAGCAAGGGCCCAGCAGGAGGACTGGGAAGGACAAATAGTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGCAAGGGCCCAGCAGGAGGACTGGGAAGGACAAATAGTGTGGA  150

seq1  GTTACCCCAACTGTAGAATATTCAGGTAGGAAGGAGCATTAGTATGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCCAACTGTAGAATATTCAGGTAGGAAGGAGCATTAGTATGTAGC  200

seq1  CCACCTCATTTTGTAGAAGCAACTTAGGCAACATTAGACTATTAGTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCATTTTGTAGAAGCAACTTAGGCAACATTAGACTATTAGTGGCC  250

seq1  AAGTGGATTCTGGAATTGTGCTCTTCTGTGCCATGTCTCGAGTTTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATTCTGGAATTGTGCTCTTCTGTGCCATGTCTCGAGTTTCTCTT  300

seq1  ACCCTGGTCTCTGAATGTAGAAGACCTGGGCCCTGAAGTCAGCTGTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGTCTCTGAATGTAGAAGACCTGGGCCCTGAAGTCAGCTGTGCCT  350

seq1  ATGGCCTTGGTTATAGGTTTGTCACCAAGCCACCTGGGAAGTGCAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTGGTTATAGGTTTGTCACCAAGCCACCTGGGAAGTGCAAATAA  400

seq1  GTCGGATTCGGAATGTATGCGAGCGGAAGAGGATGATGGATGTGGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGATTCGGAATGTATGCGAGCGGAAGAGGATGATGGATGTGGAAACT  450

seq1  CCTCTCCAGCTGTAAAGCACACGCAGAAAAGATTTCCGCTGTGGAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAGCTGTAAAGCACACGCAGAAAAGATTTCCGCTGTGGAAACAA  500

seq1  AACTGAGTGTGCTAGCCCCGCTGGCCCTCCTAAGGTGCTTTTGTACGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTGTGCTAGCCCCGCTGGCCCTCCTAAGGTGCTTTTGTACGTGC  550

seq1  CTCGCTGCGTGCACATACATATGTGTGTGTGTAGGCTCACGGACACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGCGTGCACATACATATGTGTGTGTGTAGGCTCACGGACACCAGA  600

seq1  AGTTGATGTCCTTCAGTCCCCACCTCAGCTTTTGAGACAAGGTTTCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATGTCCTTCAGTCCCCACCTCAGCTTTTGAGACAAGGTTTCTCAC  650

seq1  TAAACCCCGCACTTACTAGTTCAGCTAGACTGGCCGAGCGGCAAGCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCCGCACTTACTAGTTCAGCTAGACTGGCCGAGCGGCAAGCCCCA  700

seq1  AGCATGCCTGTGTAGAAGTTAGCCCTGGTTCTTCCTCCCAGCCCTATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCCTGTGTAGAAGTTAGCCCTGGTTCTTCCTCCCAGCCCTATAGC  750

seq1  TCTCAGAAATAAGTCTCAGACTGAAAACATATTCACAAATACCTTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAATAAGTCTCAGACTGAAAACATATTCACAAATACCTTGGCCA  800

seq1  TATAGCTACGCTCTACTCTGACTGGATCATAACTTAAAATAACC-GGTTT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATAGCTACGCTCTACTCTGACTGGATCATAACTTAAAATAACCGGGTTT  850

seq1  ATTCTAATCTACATTCTGCCACGTGGCTGGTTACCTGTGCTCAGGTAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATCTACATTCTGCCACGTGGCTGGTTACCTGTGCTCAGGTAGCA  900

seq1  CACATCAGTACTGTCACATTTTCCTGGGCCAATCTCCTGCCTGGCACTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTACTGTCACATTTTCCTGGGCCAATCTCCTGCCTGGCACTAT  950

seq1  CCCAGAATCCTTTCTGCCTACAGGATGTCCCACCTCCTATTTCCTGCCTA  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCAG-ATCCTTTCTGCCTACAGGATGTCCCACCTCCTATTTCCTGCCT-  998

seq1  AGCTATAGGCCATCTGATTTGTTATTGACAGGCGCCTCATCCATACAG-A  1048
      |||||||||||||||||||||||| ||||||||||||||| ||||||| |
seq2  AGCTATAGGCCATCTGATTTGTTA-TGACAGGCGCCTCAT-CATACAGAA  1046

seq1  CATAAGACG-TTTTTTCTACAC  1069
      ||||  ||| ||||||||||||
seq2  CATAGAACGTTTTTTTCTACAC  1068

seq1: chr8_120525215_120525433
seq2: B6Ng01-225N21.g_74_292 (reverse)

seq1  CCTAACCCCACCACCACCACCAAGATGGGCTTTCTGTGCAGCCCTGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCCACCACCACCACCAAGATGGGCTTTCTGTGCAGCCCTGGTTG  50

seq1  CGCTGGAACTCTCTCTGTAGACCAGAGATCCACCTGCCTCTGACTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGAACTCTCTCTGTAGACCAGAGATCCACCTGCCTCTGACTCCTGA  100

seq1  GTGCTGGGATTAAAGGCGTGCACCACCATGCCTGGCAGGCGGGGTATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCGTGCACCACCATGCCTGGCAGGCGGGGTATAAC  150

seq1  TTACATCAGCAGAGATATTTACCAGTCACATAAGAAGAGGAAAGGACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCAGCAGAGATATTTACCAGTCACATAAGAAGAGGAAAGGACATG  200

seq1  TCTGAAAATATCATTACGG  219
      |||||||||||||||||||
seq2  TCTGAAAATATCATTACGG  219