BAC Information

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BAC

Clone NameB6Ng01-226N24
Chromosome8 (Build37)
Map Location 108,823,189 - 108,823,957
singlet/doubletsinglet
Overlap geneSmpd3
Upstream geneE2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N24.bB6Ng01-226N24.g
ACCGA040690GA040691
length435773
definitionB6Ng01-226N24.b B6Ng01-226N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttacaacagagacccccccaggcagcaggacctaaaacacgtattgtgca
gatccatacagtacaattttgttgattctgaactaaacgtacatcaactt
agatcaacaagggatacaactgaatgaaagaagtaaacctgatatttgtt
tccatgtaagaattaccttgggactagagagatggcttagtggttaagaa
cactcgctgctgttgcagaggacccaggttcaattcctggcacctgcatt
gggcaagtcataactgcctataactaccattctgagagatctgacgccct
cttctggcttctgtgggcaccgcatgcatgcaacacatatacatatactc
aggctcatacatacacattaaataaaagggagggagcggggagggaaggg
ggaaggactcaatcaggggataacgcaattaatat
gaattcttagcatgatatttgtggcccccaaaccccttttctctgtcaga
aatgaaagttaccatgccgtgggccctggagagaagccagctgaactaca
ggacaggtcgcaggtgctggcctctcactgctgtgtgtgagacatctaga
acagcctggcgtggagtagacactgcacacaatggctgcaagttgcagac
cagcactgacctgagaaatggcagtttcctgccctagcctcttctctctg
cctgtcttcattcatgtgacaatgctgaagaaagggttcgggagccatca
aaccctctctttaccaccgtctcactaccaggtatggagggtgctgggga
tatatgtttttcactcagaggggcctggcccctggagtgacaccttacac
aggtggaacacgtttttcatgccagttagtgtcaaatagagagctcccta
agcctcagccttgtcactgtaggaagccgtttaatactggactcctctcc
ctgcccccttttttattttgtatgtatatgggtgtttgcctgcatgtgta
tctgtgcactatgtgtgtgtgtgtgcagtgcctacagaagccagaagagg
gcatcagatcccctaggactgaagctattgaaagttgtgagttgtcgtgt
gggtgttaggaattgaacatgggttctcaacgtgagcagcccgtgttctt
aactgctgaattttctccagccctacctttaaatacaaaaaacaaaagat
tttcattttatataattaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108823189_108823957
seq2: B6Ng01-226N24.g_71_843

seq1  GAATTCTTAGCATGATATTTGTGGCCCCCAAACCCCTTTTCTCTGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCATGATATTTGTGGCCCCCAAACCCCTTTTCTCTGTCAGA  50

seq1  AATGAAAGTTACCATGCCGTGGGCCCTGGAGAGAAGCCAGCTGAACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGTTACCATGCCGTGGGCCCTGGAGAGAAGCCAGCTGAACTACA  100

seq1  GGACAGGTCGCAGGTGCTGGCCTCTCACTGCTGTGTGTGAGACATCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTCGCAGGTGCTGGCCTCTCACTGCTGTGTGTGAGACATCTAGA  150

seq1  ACAGCCTGGCGTGGAGTAGACACTGCACACAATGGCTGCAAGTTGCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGCGTGGAGTAGACACTGCACACAATGGCTGCAAGTTGCAGAC  200

seq1  CAGCACTGACCTGAGAAATGGCAGTTTCCTGCCCTAGCCTCTTCTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGACCTGAGAAATGGCAGTTTCCTGCCCTAGCCTCTTCTCTCTG  250

seq1  CCTGTCTTCATTCATGTGACAATGCTGAAGAAAGGGTTCGGGAGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCATTCATGTGACAATGCTGAAGAAAGGGTTCGGGAGCCATCA  300

seq1  AACCCTCTCTTTACCACCGTCTCACTACCAGGTATGGAGGGTGCTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTCTTTACCACCGTCTCACTACCAGGTATGGAGGGTGCTGGGGA  350

seq1  TATATGTTTTTCACTCAGAGGGGCCTGGCCCCTGGAGTGACACCTTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTTTCACTCAGAGGGGCCTGGCCCCTGGAGTGACACCTTACAC  400

seq1  AGGTGGAACACGTTTTTCATGCCAGTTAGTGTCAAATAGAGAGCTCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACACGTTTTTCATGCCAGTTAGTGTCAAATAGAGAGCTCCCTA  450

seq1  AGCCTCAGCCTTGTCACTGTAGGAAGCCGTTTAATACTGGACTCCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGCCTTGTCACTGTAGGAAGCCGTTTAATACTGGACTCCTCTCC  500

seq1  CTGCCCCCTTTTTTATTTTGTATGTATATGGGTGTTTGCCTGCATGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCTTTTTTATTTTGTATGTATATGGGTGTTTGCCTGCATGTGTA  550

seq1  TCTGTGCACTATGTGTGTGTGTGTGCAGTGCCTACAGAAGCCAGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCACTATGTGTGTGTGTGTGCAGTGCCTACAGAAGCCAGAAGAGG  600

seq1  GCATCAGATCCCCTAGGACTGAAGCTATTGAAAGTTGTGAGTTGCCGTGT  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCATCAGATCCCCTAGGACTGAAGCTATTGAAAGTTGTGAGTTGTCGTGT  650

seq1  GGGTGTTAGGAATTGAACATGGGTTCTCTAGGTGAGCAGCCAGTGTTCTT  700
      |||||||||||||||||||||||||||| | |||||||||| ||||||||
seq2  GGGTGTTAGGAATTGAACATGGGTTCTCAACGTGAGCAGCCCGTGTTCTT  700

seq1  AACTGCTGACATTTCTCCAGCCCTACCTTAAAA---AAAAAAAAAAAGA-  746
      |||||||||  |||||||||||||||||| |||   |||||| |||||| 
seq2  AACTGCTGAATTTTCTCCAGCCCTACCTTTAAATACAAAAAACAAAAGAT  750

seq1  TTTCATTTTATATTATTAGTAGA  769
      ||||||||||||| |||| ||||
seq2  TTTCATTTTATATAATTAATAGA  773