BAC Information

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BAC

Clone NameB6Ng01-227A04
Chromosome8 (Build37)
Map Location 9,232,266 - 9,233,453
singlet/doubletsinglet
Overlap geneTmem28
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227A04.bB6Ng01-227A04.g
ACCGA040793GA040794
length1,1531,168
definitionB6Ng01-227A04.b B6Ng01-227A04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatcttcaaccct
atagtgaacacattatgaactaaccagtacccctgagctctgactctagc
tgcatatgtatcaaaagatgctagtcgtcatcactgaagagaagtcatga
acacgcagactttgtgtgccccggtacaggtacgccaagccaaggggggg
aag

gaattccaaagagctcacatcagcagagcactcagcaagggtgctctccc
cgtgctcagcaagggtgctctccccgtgctcactcagcaagggtgctctc
cccgtgctcagcaagggtgcactccccgtgctcagcaagggtgctctccc
cactaatgacctgtcaggatgagactgttcttagctttgaccctgtgttc
tctgtctgcctaaactacataacactcatgggtttctggacaccagagct
ggtgttggcatcctgcccatctcgattctttgccaaaaaaaaaataaagg
agatattgttatcagaaaatataaaaatcacctgtcctggcctcttttgc
cccagtgtgtacatgcgtgatccaggctgacatctccttttgtcctcaat
actgattaagatacggtgacaacattcatcacaaaataggaaggagtcat
tgataaaattccccctagactctgcagctatcctcaggagacattcacag
agagtctcggttgcagcatagctgtgtgatagagacatcgacccttgttt
aaatcacattgggaggcttttctgggctcaggccacataaaaataccttt
gggcagtctcggggttttggaagcaacatattgatggagatcaaaggagg
gccccacccagcctgtacctgtgcagatgaagctggagaggcctccgtaa
atgacttcgtcattgtcgggcaatatgaatggacaccttgtctgcacctc
caagcaatattgcttgcaaggaatggtctttctgcagttaaactgtgtga
cttcaaaatactgggagcagagccaggctttgtagacaatctgaaaaaca
aagagaaaaaaaaatcagagctgtggagggatgctacacacgtttttttt
taataaggattaggctggggtgggagagagcatgcttcagttttacatgg
gtcggaaacaactggggtagagctttttacagctccacatggtaagaatg
ccgctgtgagtactgcagtgagggtatgaatacagctatgagatgaaagt
atttatttaaagacctctgaaacagtgcattgacactctaagtttttaag
atcagtgataataagtaaagaacaatagcccgctgttatagtaacctcac
tgcaatgtgggccagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9232266_9233453
seq2: B6Ng01-227A04.g_65_1232

seq1  GAATTCCAAAGAGCTCACATCAGCAGAGCACTCAGCAAGGGTGCTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAGCTCACATCAGCAGAGCACTCAGCAAGGGTGCTCTCCC  50

seq1  CGTGCTCAGCAAGGGTGCTCTCCCCGTGCTCACTCAGCAAGGGTGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCAGCAAGGGTGCTCTCCCCGTGCTCACTCAGCAAGGGTGCTCTC  100

seq1  CCCGTGCTCAGCAAGGGTGCACTCCCCGTGCTCAGCAAGGGTGCTCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCTCAGCAAGGGTGCACTCCCCGTGCTCAGCAAGGGTGCTCTCCC  150

seq1  CACTAATGACCTGTCAGGATGAGACTGTTCTTAGCTTTGACCCTGTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGACCTGTCAGGATGAGACTGTTCTTAGCTTTGACCCTGTGTTC  200

seq1  TCTGTCTGCCTAAACTACATAACACTCATGGGTTTCTGGACACCAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGCCTAAACTACATAACACTCATGGGTTTCTGGACACCAGAGCT  250

seq1  GGTGTTGGCATCCTGCCCATCTCGATTCTTTGCCAAAAAAAAAATAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGCATCCTGCCCATCTCGATTCTTTGCCAAAAAAAAAATAAAGG  300

seq1  AGATATTGTTATCAGAAAATATAAAAATCACCTGTCCTGGCCTCTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGTTATCAGAAAATATAAAAATCACCTGTCCTGGCCTCTTTTGC  350

seq1  CCCAGTGTGTACATGCGTGATCCAGGCTGACATCTCCTTTTGTCCTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGTACATGCGTGATCCAGGCTGACATCTCCTTTTGTCCTCAAT  400

seq1  ACTGATTAAGATACGGTGACAACATTCATCACAAAATAGGAAGGAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAAGATACGGTGACAACATTCATCACAAAATAGGAAGGAGTCAT  450

seq1  TGATAAAATTCCCCCTAGACTCTGCAGCTATCCTCAGGAGACATTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATTCCCCCTAGACTCTGCAGCTATCCTCAGGAGACATTCACAG  500

seq1  AGAGTCTCGGTTGCAGCATAGCTGTGTGATAGAGACATCGACCCTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCGGTTGCAGCATAGCTGTGTGATAGAGACATCGACCCTTGTTT  550

seq1  AAATCACATTGGGAGGCTTTTCTGGGCTCAGGCCACATAAAAATACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATTGGGAGGCTTTTCTGGGCTCAGGCCACATAAAAATACCTTT  600

seq1  GGGCAGTCTCGGGGTTTTGGAAGCAACATATTGATGGAGATCAAAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTCGGGGTTTTGGAAGCAACATATTGATGGAGATCAAAGGAGG  650

seq1  GCCCCACCCAGCCTGTACCTGTGCAGATGAAGCTGGAGAGGCCTCCGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCCAGCCTGTACCTGTGCAGATGAAGCTGGAGAGGCCTCCGTAA  700

seq1  ATGACTTCGTCATTGTCGGGCAATATGAATGGACACCTTGTCTGCACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCGTCATTGTCGGGCAATATGAATGGACACCTTGTCTGCACCTC  750

seq1  CAAGCAATATTGCTTGCAAGGAATGGTCTTTCTGCAGTTAAACTGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATATTGCTTGCAAGGAATGGTCTTTCTGCAGTTAAACTGTGTGA  800

seq1  CTTCAAAATACTGGGAGCAGAGCCAGGCTTTGTAGACAATCTGAAAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATACTGGGAGCAGAGCCAGGCTTTGTAGACAATCTGAAAAACA  850

seq1  AAGAGAAAAAAAAATCAGAGCTGTGGAGGGATGCTACACACGTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAAAAAATCAGAGCTGTGGAGGGATGCTACACACGTTTTTTTT  900

seq1  TAATAAGGATTAGGCTGGG--TGGAGAGAGCATGCTTCAGTTTTACATGG  948
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TAATAAGGATTAGGCTGGGGTGGGAGAGAGCATGCTTCAGTTTTACATGG  950

seq1  GTCGGAAACAACTGGGGTAGAGCTTTTTACAGCTCCACATGGTAAGAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAAACAACTGGGGTAGAGCTTTTTACAGCTCCACATGGTAAGAATG  1000

seq1  CCGCTGTGAGTACCTGCAGTGAGGGTATTGAATACAAGCCTATGGAGAAT  1048
      |||||||||||| |||||||||||||| ||||||||   |||| ||| ||
seq2  CCGCTGTGAGTA-CTGCAGTGAGGGTA-TGAATACA--GCTAT-GAG-AT  1044

seq1  GGAAAAGGTATTTAATTTAAAGAACTCTTGGAAAACAGTGCATTTGAACC  1098
      |   || |||||| ||||||||| ||||    |||||||||| ||||   
seq2  G---AAAGTATTT-ATTTAAAGACCTCT---GAAACAGTGCA-TTGA---  1083

seq1  AACTCTAAAGTTTTTAGGATCCAGTGATATATAAAGTAAAGAACACAATA  1148
       ||||| ||||||||| ||| |||||||| || |||||||||  ||||||
seq2  CACTCT-AAGTTTTTAAGAT-CAGTGATA-AT-AAGTAAAGA--ACAATA  1127

seq1  AGCCCCGCTGATAATGTAA-CTCACTGCA--GTGGGGCAGAGA  1188
         ||||||| ||  |||| |||||||||  ||||| ||||||
seq2  --GCCCGCTGTTATAGTAACCTCACTGCAATGTGGGCCAGAGA  1168


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