BAC Information

Click to search

BAC

Clone NameB6Ng01-227E09
Chromosome8 (Build37)
Map Location 7,176,754 - 7,177,873
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E09.bB6Ng01-227E09.g
ACCGA040986GA040987
length1,1161,236
definitionB6Ng01-227E09.b B6Ng01-227E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtctatgaatctatgtctatatgtgtttgtagtggtatagcc
ttacgcttaatgtgtcctaaagctaattttgggctctcaagactatttgt
cccagaaatgtgagagtatccaatgtaagatgctgagagactcttcccct
aagttattgctgattggtaaataaagatgctcacagccaatcactgggca
gaagagacatagatgaggcttatgtttcctggacttagggtgggaggaga
accagaaggggaagaagaaaggcaggaaagggaaggaacagagaccatgg
tttaggagttgagagaatatgtctgtgtgggctggccaattggaattaag
cccagcccaggtgaaacatagtaaatagtaataaataactcagattatca
ataggaaagtatattctaacactatggagggtaggcagttgcccagctct
tgtgttgtttaaggctaattgtgaatgtaaaggctatgagtgtctttcat
ctgggatctaaagggtcaaaagcagggtagaaaccttgggccaggattta
atttctttctacaaaatttgtttcttgtgccaggcagtggtggcacatgc
acatgcctttaatcccagcacttgggaggcagaggcaggcagatttctga
gttcgaggccagcctgatctacaaagtgagttccaggacagccagggcta
tactgagaaaccctgtttcgaaaaaccaaaaaaaaataaataaataaaaa
taaataaataaataaataaagtttcttgtgatttttctttgagtcatttt
tgttgttgttctatatagatttatgggattttattttagcgtcttttctt
ttattattttatgtgcctgtgggtttactaaagatagacagaagtgtatt
tccatgaaagaagatgtgttaaggatctagaagagactgagggagaggaa
accataatcataatatagtataggaaaaacttatttcaaaaaagtaaaaa
taaattttaaaagtccacaaagtaattttctatcacactgggtagttcag
tcttatgagaaaaacgaacaacaaataaaaggcaaatgactaaataaatc
tattatatatgacctc

gaattccagagtggttgtacaagcttgcaatcccaccaacaatggaggag
tgttcctctttctccatatccttgacagcatctgctgtcacctgaatttt
ttatcttagccattctgactggtgtgaggtggaatctcagggttgttttg
atttgcatttccctgatgattaaggatgttgaacattttttcaggtgctt
ctctaccattcgttattcctcaggtgaaaattctttcttcagctcttatc
cccattgtttaatggggttatttgatttttctggaatccacattcttgag
ttctttatatatattggatattagtcccctatctgattttggataggtaa
agatcctttccaaatcttgtggtctttttgtcttattgacggtgtctttt
gccttgcagaagttttgcaactttatgaggttccatttgtcgattctcga
tcttacagcacaagccattgctgttctattcaggaatatttcccctgtac
ccatatcttcgaggcttttccatactttctcctctataagtttcagtgtc
tctggttttatgtggagttccttgatccacatagatttaaccttagtaca
aggagataggaatggatcaattagcattcttctacatgataactgccagt
tgtgccagcaccatttgttgaaaatgctgtcttttccactggatggtttt
agctcccttgtcaaagatcaagtgaccataggtgtttgggttcatctctg
ggtcttcaattccattccattggtctacttgtctgttgttataacagtac
catgctgtttttatcacaattgctctctagtacagatttaagtcatgcat
ggtgattccaccagaggttcttttatctttgataagaatttttgctatct
gaggttttttgttatttccaccatgaatctgcgaattgcactttctaatt
ctttgaggaattgagttggaattttgatgggattgcattgaatctgtaga
ttgcttttggcaagatagccatttttactataatgatcctgccaattcat
gaggcataggagatctttcaatctttctgaaaatcatctttaaacttctc
tcttccagaggacttgaagttcttttcaccacgatcttttcagtcttagt
tgagagtctaagcaaggaatttatattatttggtaactactggtgaaagg
gtatgtctacctcatttctcttttctctcagctcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_7176754_7177873
seq2: B6Ng01-227E09.b_42_1157

seq1  GAATTCCTGTCTATGAATCTATGTCTATATGTGTTTGTAGTGGTATAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTATGAATCTATGTCTATATGTGTTTGTAGTGGTATAGCC  50

seq1  TTACGCTTAATGTGTCCTAAAGCTAATTTTGGGCTCTCAAGACTATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCTTAATGTGTCCTAAAGCTAATTTTGGGCTCTCAAGACTATTTGT  100

seq1  CCCAGAAATGTGAGAGTATCCAATGTAAGATGCTGAGAGACTCTTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGTGAGAGTATCCAATGTAAGATGCTGAGAGACTCTTCCCCT  150

seq1  AAGTTATTGCTGATTGGTAAATAAAGATGCTCACAGCCAATCACTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTGCTGATTGGTAAATAAAGATGCTCACAGCCAATCACTGGGCA  200

seq1  GAAGAGACATAGATGAGGCTTATGTTTCCTGGACTTAGGGTGGGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACATAGATGAGGCTTATGTTTCCTGGACTTAGGGTGGGAGGAGA  250

seq1  ACCAGAAGGGGAAGAAGAAAGGCAGGAAAGGGAAGGAACAGAGACCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGGGGAAGAAGAAAGGCAGGAAAGGGAAGGAACAGAGACCATGG  300

seq1  TTTAGGAGTTGAGAGAATATGTCTGTGTGGGCTGGCCAATTGGAATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGTTGAGAGAATATGTCTGTGTGGGCTGGCCAATTGGAATTAAG  350

seq1  CCCAGCCCAGGTGAAACATAGTAAATAGTAATAAATAACTCAGATTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCAGGTGAAACATAGTAAATAGTAATAAATAACTCAGATTATCA  400

seq1  ATAGGAAAGTATATTCTAACACTATGGAGGGTAGGCAGTTGCCCAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAGTATATTCTAACACTATGGAGGGTAGGCAGTTGCCCAGCTCT  450

seq1  TGTGTTGTTTAAGGCTAATTGTGAATGTAAAGGCTATGAGTGTCTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTTTAAGGCTAATTGTGAATGTAAAGGCTATGAGTGTCTTTCAT  500

seq1  CTGGGATCTAAAGGGTCAAAAGCAGGGTAGAAACCTTGGGCCAGGATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCTAAAGGGTCAAAAGCAGGGTAGAAACCTTGGGCCAGGATTTA  550

seq1  ATTTCTTTCTACAAAATTTGTTTCTTGTGCCAGGCAGTGGTGGCACATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCTACAAAATTTGTTTCTTGTGCCAGGCAGTGGTGGCACATGC  600

seq1  ACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGA  650

seq1  GTTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA  700

seq1  TACTGAGAAACCCTGTTTCGAAAAACCAAAAAAAAATAAATAAATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGAAACCCTGTTTCGAAAAACCAAAAAAAAATAAATAAATAAAAA  750

seq1  TAAATAAATAAATAAATAAAGTTTCTTGTGATTTTTCTTTGAGTCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAAGTTTCTTGTGATTTTTCTTTGAGTCATTTT  800

seq1  TGTTGTTGTTCTATATAGATTTATGGGATTTTATTTTAGCGTCTTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTCTATATAGATTTATGGGATTTTATTTTAGCGTCTTTTCTT  850

seq1  TTATTATTTTATGTGCCTGTGGGTTTACTAAAGATAGACAGAAGTGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTATGTGCCTGTGGGTTTACTAAAGATAGACAGAAGTGTATT  900

seq1  TCCATGAAAGAAGATGTGTTAAGGATCTAGAAGAGACTGAGGGAGAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAAGAAGATGTGTTAAGGATCTAGAAGAGACTGAGGGAGAGGAA  950

seq1  ACCATAATCATAATATAGTATAGGAAAAAACTATTTCAAAAAAGTAAAAA  1000
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ACCATAATCATAATATAGTATAGGAAAAACTTATTTCAAAAAAGTAAAAA  1000

seq1  TAAA-TTTAAAAGT-CACAAAGTAA-TATCTATCACACT-GGTAGTTCAG  1046
      |||| ||||||||| |||||||||| | ||||||||||| ||||||||||
seq2  TAAATTTTAAAAGTCCACAAAGTAATTTTCTATCACACTGGGTAGTTCAG  1050

seq1  TCATTATGAGAAAAAACAGAACAAACAAAATAAAAGCAAAATGAACTAAA  1096
      || ||||||||||||   ||||||   |||||||||  ||||| ||||||
seq2  TC-TTATGAGAAAAA--CGAACAA--CAAATAAAAGGCAAATG-ACTAAA  1094

seq1  ATAAAATCTAATATATATGACCTC  1120
         ||||||| |||||||||||||
seq2  --TAAATCTATTATATATGACCTC  1116


| Home | SequenceCutter | Blast | Download |