BAC Information

Click to search

BAC

Clone NameB6Ng01-227G24
Chromosome8 (Build37)
Map Location 29,247,279 - 29,408,124
singlet/doubletdoublet
Overlap geneLOC666430
Upstream geneRab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422
Downstream geneEG666446, LOC100042598, Unc5d, LOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G24.bB6Ng01-227G24.g
ACCGA041107GA041108
length1,0411,188
definitionB6Ng01-227G24.b B6Ng01-227G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,407,087 - 29,408,124)(29,247,279 - 29,248,461)
sequence
gaattccagtagtgtctagtgatgaaccccagtttatttcttctttgctt
ctgattgtttgacttctgtctattctattacttatactttataaaaagta
aagatactttgtttgccattactactataattgtgatggtccatatttgc
ctgcagaatcttgggtgttttggttacacattgggtgactcagactagct
ctgtacatatatatggctttgcttcttaaactcaaagcgggtcacggttt
gacatgtataataattttgtggaagacaacctcaggagaagtgcttgaga
ctgggctgaggagtcaatgggtttctatggatgctttgttgattataact
gggtggagacacatacactccaggctctagtggctgttctttcactcagt
ccttcaaaggtacactctctgccacagaaacagtttttcttctaatcaat
tcaaataccgatcagttctgaaatatctttattcttttatcttatttagg
aaattcattttttccctcagatttctgaaagtcatacatcccataaaacc
ttactctgatttccatactctactttttctttccatgtttgactgatctg
tgttttgtaagaagaatgcttctcctatgttgcaacaggtgggtctccag
agcctctgagaccaaaaactcacaagacacctttattcccaaaggcaaca
aatgcagggatgagtgtccactgaatgtgctgagaataatagagagttga
gtaatcaaccataaacagaacatttattctactccacgtaaagggtcagg
gaacattgtagaaggggagagaaaagaacataagaactgggagacaggga
ggaagaaggtttagaacatgttatcttctgagcctgatacagcatgccat
catggtcttatagaagctgcctacactgtcaactgccagtcatgagttga
gatgggacaaccatcaccttaaattaaattaggcctggctgggttaacct
ggatacacttccagtgatcaccacacccatgattacacaaa
gaattccaggtttcaggcacctgtaccttcaaaccaaactttaggagcaa
atagaaattttttctactaagacaatacagaagaatattcaattatttca
acaaattggattactatgttttatattaaaatatcttttaatgatgcaat
aaattaaagaaaaaggagtactgtggcatcctaaggctcttgactaccat
aagttgctttgactctgttgtctatcattgaaaacacccagagattttgg
gttgactttttatacctaaattatgcaaaatatataaatttccagtgaca
acaaatatgatggtttgcaccttatgaccccattggcaaatgaacatagt
accattaactttgaattaaaaattaagtaatacttacatttcaataatta
taggtaaattaataatgctacaaattgactacaaaggagtactactccat
tttctgtttattaaaaaaaaaagaattgataatgtgtacagcacttatga
aatcctggttggtcaactaagctggcattttgtctctctccctatcacta
atatttgacacattaaaaaaaagacaatgttgttaaaaggtatttgaaat
gatataattaatatgttgctgtgtgaattttttctagaatgtgacgttct
atttactgccccaaatgcatgaaattttaggtattaaatataagtctttc
ctaaaattaaaactagccaacccatgtaaagttataactataaaatcaaa
ttggacaaaagaaaaaaatatagcaaattatttaaatttcttcaaaaatc
aaataaaatatttcatcaaatacatgtaactggggcagagagggaaacat
agagaggacctgtttagagctaaagagtatgatttgggagttagttacaa
tgtgttttccctcagctgctatttgttacttcttcaaggctataccaagc
tcttggtcattttaactttaggaatagttatgctactgtatttctatgtt
aacataaacgtatgtcagatgcagagggtcaaaataaacaaaatgtaacc
acaacacagaaaatagaacaaacccctcagaactgagagtctgatggctg
aataatctagaattacacaggaattcttctttttgtgcaattgaacctaa
gggagcctccctgcagacttgccttttccgtgcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_29407087_29408124
seq2: B6Ng01-227G24.b_50_1090 (reverse)

seq1  TTTGTGTAATCATGGGTGTGGTGATCACTGG-AGTGTAT-CAGGTTAACC  48
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TTTGTGTAATCATGGGTGTGGTGATCACTGGAAGTGTATCCAGGTTAACC  50

seq1  CAGCCAGGCCTAATTTAATTTAAGGTGATGGTTGTCCCATCTCAACTCAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCCTAATTTAATTTAAGGTGATGGTTGTCCCATCTCAACTCAT  100

seq1  GACTGGCAGTTGACAGTGTAGGCAGCTTCTATAAGACCATGATGGCATGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCAGTTGACAGTGTAGGCAGCTTCTATAAGACCATGATGGCATGC  150

seq1  TGTATCAGGCTCAGAAGATAACATGTTCTAAACCTTCTTCCTCCCTGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGGCTCAGAAGATAACATGTTCTAAACCTTCTTCCTCCCTGTCT  200

seq1  CCCAGTTCTTATGTTCTTTTCTCTCCCCTTCTACAATGTTCCCTGACCC-  247
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCAGTTCTTATGTTCTTTTCTCTCCCCTTCTACAATGTTCCCTGACCCT  250

seq1  TTACGTGGAGTAGAATAAATGTTCTGTTTATGGTTGATTACTCAACTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGGAGTAGAATAAATGTTCTGTTTATGGTTGATTACTCAACTCTC  300

seq1  TATTATTCTCAGCACATTCAGTGGACACTCATCCCTGCATTTGTTGCCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTCAGCACATTCAGTGGACACTCATCCCTGCATTTGTTGCCTT  350

seq1  TGGGAATAAAGGTGTCTTGTGAGTTTTTGGTCTCAGAGGCTCTGGAGACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAAAGGTGTCTTGTGAGTTTTTGGTCTCAGAGGCTCTGGAGACC  400

seq1  CACCTGTTGCAACATAGGAGAAGCATTCTTCTTACAAAACACAGATCAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTGCAACATAGGAGAAGCATTCTTCTTACAAAACACAGATCAGT  450

seq1  CAAACATGGAAAGAAAAAGTAGAGTATGGAAATCAGAGTAAGGTTTTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGGAAAGAAAAAGTAGAGTATGGAAATCAGAGTAAGGTTTTATG  500

seq1  GGATGTATGACTTTCAGAAATCTGAGGGAAAAAATGAATTTCCTAAATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATGACTTTCAGAAATCTGAGGGAAAAAATGAATTTCCTAAATAA  550

seq1  GATAAAAGAATAAAGATATTTCAGAACTGATCGGTATTTGAATTGATTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAATAAAGATATTTCAGAACTGATCGGTATTTGAATTGATTAG  600

seq1  AAGAAAAACTGTTTCTGTGGCAGAGAGTGTACCTTTGAAGGACTGAGTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACTGTTTCTGTGGCAGAGAGTGTACCTTTGAAGGACTGAGTGA  650

seq1  AAGAACAGCCACTAGAGCCTGGAGTGTATGTGTCTCCACCCAGTTATAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCCACTAGAGCCTGGAGTGTATGTGTCTCCACCCAGTTATAAT  700

seq1  CAACAAAGCATCCATAGAAACCCATTGACTCCTCAGCCCAGTCTCAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGCATCCATAGAAACCCATTGACTCCTCAGCCCAGTCTCAAGCA  750

seq1  CTTCTCCTGAGGTTGTCTTCCACAAAATTATTATACATGTCAAACCGTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTGAGGTTGTCTTCCACAAAATTATTATACATGTCAAACCGTGA  800

seq1  CCCGCTTTGAGTTTAAGAAGCAAAGCCATATATATGTACAGAGCTAGTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTTGAGTTTAAGAAGCAAAGCCATATATATGTACAGAGCTAGTCT  850

seq1  GAGTCACCCAATGTGTAACCAAAACACCCAAGATTCTGCAGGCAAATATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCCAATGTGTAACCAAAACACCCAAGATTCTGCAGGCAAATATG  900

seq1  GACCATCACAATTATAGTAGTAATGGCAAACAAAGTATCTTTACTTTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCACAATTATAGTAGTAATGGCAAACAAAGTATCTTTACTTTTTA  950

seq1  TAAAGTATAAGTAATAGAATAGACAGAAGTCAAACAATCAGAAGCAAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATAAGTAATAGAATAGACAGAAGTCAAACAATCAGAAGCAAAGA  1000

seq1  AGAAATAAACTGGGGTTCATCACTAGACACTACTGGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAACTGGGGTTCATCACTAGACACTACTGGAATTC  1041

seq1: chr8_29247279_29248461
seq2: B6Ng01-227G24.g_65_1252

seq1  GAATTCCAGGTTTCAGGCACCTGTACCTTCAAACCAAACTTTAGGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTTCAGGCACCTGTACCTTCAAACCAAACTTTAGGAGCAA  50

seq1  ATAGAAATTTTTTCTACTAAGACAATACAGAAGAATATTCAATTATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTTTTTCTACTAAGACAATACAGAAGAATATTCAATTATTTCA  100

seq1  ACAAATTGGATTACTATGTTTTATATTAAAATATCTTTTAATGATGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGGATTACTATGTTTTATATTAAAATATCTTTTAATGATGCAAT  150

seq1  AAATTAAAGAAAAAGGAGTACTGTGGCATCCTAAGGCTCTTGACTACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGAAAAAGGAGTACTGTGGCATCCTAAGGCTCTTGACTACCAT  200

seq1  AAGTTGCTTTGACTCTGTTGTCTATCATTGAAAACACCCAGAGATTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTTGACTCTGTTGTCTATCATTGAAAACACCCAGAGATTTTGG  250

seq1  GTTGACTTTTTATACCTAAATTATGCAAAATATATAAATTTCCAGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTTTTATACCTAAATTATGCAAAATATATAAATTTCCAGTGACA  300

seq1  ACAAATATGATGGTTTGCACCTTATGACCCCATTGGCAAATGAACATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGATGGTTTGCACCTTATGACCCCATTGGCAAATGAACATAGT  350

seq1  ACCATTAACTTTGAATTAAAAATTAAGTAATACTTACATTTCAATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACTTTGAATTAAAAATTAAGTAATACTTACATTTCAATAATTA  400

seq1  TAGGTAAATTAATAATGCTACAAATTGACTACAAAGGAGTACTACTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAATTAATAATGCTACAAATTGACTACAAAGGAGTACTACTCCAT  450

seq1  TTTCTGTTTATTAAAAAAAAAAGAATTGATAATGTGTACAGCACTTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTATTAAAAAAAAAAGAATTGATAATGTGTACAGCACTTATGA  500

seq1  AATCCTGGTTGGTCAACTAAGCTGGCATTTTGTCTCTCTCCCTATCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGTTGGTCAACTAAGCTGGCATTTTGTCTCTCTCCCTATCACTA  550

seq1  ATATTTGACACATTAAAAAAAAGACAATGTTGTTAAAAGGTATTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGACACATTAAAAAAAAGACAATGTTGTTAAAAGGTATTTGAAAT  600

seq1  GATATAATTAATATGTTGCTGTGTGAATTTTTTCTAGAATGTGACGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATTAATATGTTGCTGTGTGAATTTTTTCTAGAATGTGACGTTCT  650

seq1  ATTTACTGCCCCAAATGCATGAAATTTTAGGTATTAAATATAAGTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCCCCAAATGCATGAAATTTTAGGTATTAAATATAAGTCTTTC  700

seq1  CTAAAATTAAAACTAGCCAACCCATGTAAAGTTATAACTATAAAATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTAAAACTAGCCAACCCATGTAAAGTTATAACTATAAAATCAAA  750

seq1  TTGGACAAAAGAAAAAAATATAGCAAATTATTTAAATTTCTTCAAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAAAGAAAAAAATATAGCAAATTATTTAAATTTCTTCAAAAATC  800

seq1  AAATAAAATATTTCATCAAATACATGTAACT-GGGCAGAGAGGGAAACAT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATAAAATATTTCATCAAATACATGTAACTGGGGCAGAGAGGGAAACAT  850

seq1  AGAGAGGACCTG-TTAGAGCTAAAGAGTATGATTT-GGAGTTAGTTACAA  897
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  AGAGAGGACCTGTTTAGAGCTAAAGAGTATGATTTGGGAGTTAGTTACAA  900

seq1  TGTGTTTTCCCTCAGCTGCTATTTG-TACTTCTTC-AGGCTATACCAAGC  945
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TGTGTTTTCCCTCAGCTGCTATTTGTTACTTCTTCAAGGCTATACCAAGC  950

seq1  TCTTGGTCATTTTAACTTTAGGAATAGTTATGCTACTGTATTTCTATGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCATTTTAACTTTAGGAATAGTTATGCTACTGTATTTCTATGTT  1000

seq1  -ACATAAACGTAATGTCAGATGCAGAAGGTCAAAATAAACAAAAATGTAA  1044
       |||||||||| |||||||||||||| ||||||||||||| |||||||||
seq2  AACATAAACGT-ATGTCAGATGCAGAGGGTCAAAATAAAC-AAAATGTAA  1048

seq1  CAACAACAACAAGAAAAATAGAAACAAACCCTCAG-ACTGAGAGTCTGAT  1093
      | ||||| |||   |||||||||  || ||||||| ||||||||||||||
seq2  CCACAAC-ACA--GAAAATAGAACAAACCCCTCAGAACTGAGAGTCTGAT  1095

seq1  GGCTGATAAATTCTAAGAAT--CACAGGAATTTCTTCTTTTGTGGCATTT  1141
      |||||| | | ||| |||||  |||||||| ||||||||||   ||| ||
seq2  GGCTGA-ATAATCT-AGAATTACACAGGAA-TTCTTCTTTTTGTGCAATT  1142

seq1  TGAACTAA-GGAGCTCCCCTGCAGACTTGC--TTTCC-TGCCTTTT  1183
        | |||| |||||  ||||||||||||||  ||||| ||||||||
seq2  GAACCTAAGGGAGCCTCCCTGCAGACTTGCCTTTTCCGTGCCTTTT  1188