BAC Information

Click to search

BAC

Clone NameB6Ng01-228C20
Chromosome15 (Build37)8 (Build37)
Map Location 76,052,556 - 76,052,58912,464,125 - 12,465,245
singlet/doubletsingletsinglet
Overlap genePlec1
Upstream geneBC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139
Downstream geneLOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C20.bB6Ng01-228C20.g
ACCGA041651GA041652
length1091,121
definitionB6Ng01-228C20.b B6Ng01-228C20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,052,556 - 76,052,589)(12,464,125 - 12,465,245)
sequence
tatgacaacacactcaacctgaaactatacttttaaaagtatatttatat
tttaaaagatttatttgcccgttgttgtatgggtgtgtgtatgtgtgtgt
gtatgtgtg
gaattcattttgggtttcagcaaggccagaccctaaggccaccaccctcc
tccacttaccagctggacacatctctacgaagacatttttcctgatattt
taagtctggttacgagttgtgcagtttatattggggaggcgggataagta
tccgatcccttctttttatttactagttgttaagataatgaatcattcat
tagcatcttccactggcaccaattatttttcagtttaattaagaactcat
gggcttaagcagatgtgttgagttgcaattgctgccgttacattctgacg
atcaaattgtctgctcctggccatcagaagcttgcttgcccatatctgtc
tgtctgtcaccccggaggtgggacagacaccccagctctagctgtccaga
ggagcctcaaagagctgcttctccaagaaatctggcttgttttagttgag
ttgtgtctgacatgatctctggcccagacaccctccatgcccatgtgcat
tacgcagatctgtatttaccttcctgtattaagactccaggagcaagcac
acacaaggtggcatctacctcttgtcaccaagtgggctgtagaaacgttg
attccagcatctgaagagtgagttccttcaaatggacgcaacagaagcta
cagtcagttccatgtgctgccaacagagtgaaggcgtctcatcagcacac
tatttctgtcactaaacttaaggtcacaagattctgacgagccagatgtt
atatccaagtgatggcttctgaagtatggatgcccaatgccttatggatc
tagggcaatcttccccagtggtattctgctacacctctaccattgggtca
tgggagcagaattttccttccagagtaaagtccactgggaagaaactcct
cagggtggatgctgcctgcaggaggaaagctctcaggatgctcatcggct
gattgatccgaatgatgcatgccagctgctggacttaatcaatgggatag
agataaggaggaatggctgccagaggctaggctgggcccttgtaagccag
aaatgcaactggcatgttagacatgcagctccaacgacttacttgcttgg
aaaccttatgaaagtgtagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76052556_76052589
seq2: B6Ng01-228C20.b_126_159 (reverse)

seq1  CACACACACACACACACATACACACACACATACA  34
      |||||| |||||||||||||||||||| ||||||
seq2  CACACATACACACACACATACACACACCCATACA  34

seq1: chr8_12464125_12465245
seq2: B6Ng01-228C20.g_67_1187

seq1  GAATTCATTTTGGGTTTCAGCAAGGCCAGACCCTAAGGCCACCACCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGGTTTCAGCAAGGCCAGACCCTAAGGCCACCACCCTCC  50

seq1  TCCACTTACCAGCTGGACACATCTCTACGAAGACATTTTTCCTGATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTACCAGCTGGACACATCTCTACGAAGACATTTTTCCTGATATTT  100

seq1  TAAGTCTGGTTACGAGTTGTGCAGTTTATATTGGGGAGGCGGGATAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGGTTACGAGTTGTGCAGTTTATATTGGGGAGGCGGGATAAGTA  150

seq1  TCCGATCCCTTCTTTTTATTTACTAGTTGTTAAGATAATGAATCATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCCCTTCTTTTTATTTACTAGTTGTTAAGATAATGAATCATTCAT  200

seq1  TAGCATCTTCCACTGGCACCAATTATTTTTCAGTTTAATTAAGAACTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTTCCACTGGCACCAATTATTTTTCAGTTTAATTAAGAACTCAT  250

seq1  GGGCTTAAGCAGATGTGTTGAGTTGCAATTGCTGCCGTTACATTCTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAAGCAGATGTGTTGAGTTGCAATTGCTGCCGTTACATTCTGACG  300

seq1  ATCAAATTGTCTGCTCCTGGCCATCAGAAGCTTGCTTGCCCATATCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTGTCTGCTCCTGGCCATCAGAAGCTTGCTTGCCCATATCTGTC  350

seq1  TGTCTGTCACCCCGGAGGTGGGACAGACACCCCAGCTCTAGCTGTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCACCCCGGAGGTGGGACAGACACCCCAGCTCTAGCTGTCCAGA  400

seq1  GGAGCCTCAAAGAGCTGCTTCTCCAAGAAATCTGGCTTGTTTTAGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCAAAGAGCTGCTTCTCCAAGAAATCTGGCTTGTTTTAGTTGAG  450

seq1  TTGTGTCTGACATGATCTCTGGCCCAGACACCCTCCATGCCCATGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGACATGATCTCTGGCCCAGACACCCTCCATGCCCATGTGCAT  500

seq1  TACGCAGATCTGTATTTACCTTCCTGTATTAAGACTCCAGGAGCAAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCAGATCTGTATTTACCTTCCTGTATTAAGACTCCAGGAGCAAGCAC  550

seq1  ACACAAGGTGGCATCTACCTCTTGTCACCAAGTGGGCTGTAGAAACGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGTGGCATCTACCTCTTGTCACCAAGTGGGCTGTAGAAACGTTG  600

seq1  ATTCCAGCATCTGAAGAGTGAGTTCCTTCAAATGGACGCAACAGAAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCATCTGAAGAGTGAGTTCCTTCAAATGGACGCAACAGAAGCTA  650

seq1  CAGTCAGTTCCATGTGCTGCCAACAGAGTGAAGGCGTCTCATCAGCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTTCCATGTGCTGCCAACAGAGTGAAGGCGTCTCATCAGCACAC  700

seq1  TATTTCTGTCACT-AACTTAAGGTCACAAGATTCTGACGAGCCAGATGTT  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTCACTAAACTTAAGGTCACAAGATTCTGACGAGCCAGATGTT  750

seq1  ATATCCAAGTGATGGCTTCTGAAGTATGGATGCCCAATGCCTTATGGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAAGTGATGGCTTCTGAAGTATGGATGCCCAATGCCTTATGGATC  800

seq1  TAGGGCAATCTTCCCCAGTGGTATTCTGCTACACCTCTACCATTGGGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAATCTTCCCCAGTGGTATTCTGCTACACCTCTACCATTGGGTCA  850

seq1  TGGGAGCAGAAATTTTCCTTCCAGAGTAAAGTCCACTGGGAAGAAACTCC  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCAG-AATTTTCCTTCCAGAGTAAAGTCCACTGGGAAGAAACTCC  899

seq1  TCAGGGTGGATGCTGCCTGCAGGAGGAAGGCTCTCAAGGATGCTCATCGG  949
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TCAGGGTGGATGCTGCCTGCAGGAGGAAAGCTCTC-AGGATGCTCATCGG  948

seq1  CTGATTGATTCCGAATGATGCATGCCAGCTGCTGGACTTAATCAATGGGA  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGA-TCCGAATGATGCATGCCAGCTGCTGGACTTAATCAATGGGA  997

seq1  TAGAGATAA-GAAGAAAGGCTGGCAGAGGC-AGGCTGG--CCCTGTAGGC  1045
      ||||||||| || ||| ||||| ||||||| |||||||  || |||| ||
seq2  TAGAGATAAGGAGGAATGGCTGCCAGAGGCTAGGCTGGGCCCTTGTAAGC  1047

seq1  CAGAAAGGCAACTGGCAAGGTAGACCATGCCAGCTCCACCGACTACCTTG  1095
      |||||| |||||||||| | |||| |||| |||||||| |||||  ||||
seq2  CAGAAATGCAACTGGCATGTTAGA-CATG-CAGCTCCAACGACTTACTTG  1095

seq1  CTATGAAACCTTATGAAAGTGTAGTC  1121
      ||  ||||||||||||||||||||||
seq2  CTTGGAAACCTTATGAAAGTGTAGTC  1121