BAC Information

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BAC

Clone NameB6Ng01-228O24
Chromosome8 (Build37)
Map Location 12,863,878 - 12,864,952
singlet/doubletsinglet
Overlap geneAtp11a
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3
Downstream geneLOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228O24.bB6Ng01-228O24.g
ACCGA042218GA042219
length1,084448
definitionB6Ng01-228O24.b B6Ng01-228O24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaaatgctgtcctgatgttgtatgttctgccaaaagaacagaa
agcccacatcagttacagaacctctctgaggaacccctaacaaccaatgc
acctgtagctttgccagcccacctcagaccactacatcaccctgaggggt
aggtaagtgggcccatctcgtgggaactgtgtccagaggcaatgtgcctt
tggtctgtggatcaacactaagttttagtgccataagagggaccatccta
catggctgacatagggaacaacataggagggtaggggacaaagtgctgaa
cacactgagtatctcccctgtcactatggtcacatgcagtgatcaaaggc
cccagacatccttgaactagggttctagcactaccccaggaagacgacag
gactcacctgtgcgggctagtatgtcctagcccgatgggactggggtcaa
tatcatgctgaccacaccaagctatcatgccctcggcttacagttatcag
acagaagtggctggcacgcctcgtaagaaagaccagagcatgcacaaaca
gcagccgagagcccggagggagggacacgaggttgtagtgtgggtctgtt
ctcctgggggacaatcccagattgtgctgttttcaggtgagcaccactag
gtaaggctagtagatccacaaatactggagcggcctcggagccccggggc
tgtccacacacagttgtgtgcttagcaaacagtttcagctagatgctacc
tgggctcatgtcctgtgctgctgtgtgagatgttcctttccggtgcccag
acaggattatcccctgtagctttaagtgaagctgtgtctgtcacaaggac
agaggccagcttgtcaggcaacaatgggcatgtgctacagcatttcccct
atgtgcttagctcactctcgggtgctaacttacctgtgtgtatatgtgtg
tgcatatgtaaaaatggtatagtttgttttcagagaaaatcactcatttt
aaaaaacgtacaacacatcaaaccttttggaggagaaccagttctgaaga
gtcaccaggcacactgtgcctagcgtccagcagg

cttcccccacttccttcagtgatggactatgatgtggaagtgtaagccaa
ataaaccctttcctccccagcttgcgtttggtcactgtgtttcattgaag
caatagaaaccctaactagggcagaaactggtaccaggattgtggggttt
tgctgtgacagatatgaccaagttttttttggagggggtggtttgtggaa
ggactttgtaactttgggtaagaaaaaccattacgcattcaaagcttggt
gagctgctctgtgggagtgtcaaaggaaatgcagacggtgatggcctggc
ttgtgaagtgccagaaggaagtttgagcgttaaatagcatcatggctatt
gcgcatttgctacgtgattctggtgagttcatgctgaatccgccgtgact
tccgtttcttccgagagacctgaaccactgaggtgtaacctttgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_12863878_12864952
seq2: B6Ng01-228O24.b_46_1129 (reverse)

seq1  CCTGCTGGGCGCTAGGC-CAGTGTGC--TGTGACTC-TCAG-ACTGTTCT  45
      |||||||| |||||||| ||||||||   ||||||| |||| |||| |  
seq2  CCTGCTGGACGCTAGGCACAGTGTGCCTGGTGACTCTTCAGAACTGGTTC  50

seq1  TCCTCC-AAAGTTTTGCTGTGTTGTCTGTTTTTT-AAATGAGTGATTTTC  93
      |||||| |||| |||| ||||||||  ||||||| |||||||||||||||
seq2  TCCTCCAAAAGGTTTGATGTGTTGTACGTTTTTTAAAATGAGTGATTTTC  100

seq1  TCTGAAAACAAACTATACCATTTTTACATATGCACACACATATACACACA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACAAACTATACCATTTTTACATATGCACACACATATACACACA  150

seq1  GGTAAG-TAGCACCCGAGAGTGAGCTAAGCACATAGGGGAAATGCTGTAG  192
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTAGCACCCGAGAGTGAGCTAAGCACATAGGGGAAATGCTGTAG  200

seq1  CACATGCCCATTGTTGCCTGACAAGCTGGCCTCTGTCCTTGTGACAGACA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCCATTGTTGCCTGACAAGCTGGCCTCTGTCCTTGTGACAGACA  250

seq1  CAGCTTCACTTAAAGCTACAGGGGATAATCCTGTCTGGGCACCGG-AAGG  291
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCTTCACTTAAAGCTACAGGGGATAATCCTGTCTGGGCACCGGAAAGG  300

seq1  AACATCTCACACAGCAGCACAGGACATGAGCCCAGGTAGCATCTAGCTGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCACACAGCAGCACAGGACATGAGCCCAGGTAGCATCTAGCTGA  350

seq1  AACTGTTTGCTAAGCACACAACTGTGTGTGGACAGCCCCGGGGCTCCGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTGCTAAGCACACAACTGTGTGTGGACAGCCCCGGGGCTCCGAG  400

seq1  GCCGCTCCAGTATTTGTGGATCTACTAGCCTTACCTAGTGGTGCTCACCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTCCAGTATTTGTGGATCTACTAGCCTTACCTAGTGGTGCTCACCT  450

seq1  GAAAACAGCACAATCTGGGATTGTCCCCCAGGAGAACAGACCCACACTAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCACAATCTGGGATTGTCCCCCAGGAGAACAGACCCACACTAC  500

seq1  AACCTCGTGTCCCTCCCTCCGGGCTCTCGGCTGCTGTTTGTGCATGCTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCGTGTCCCTCCCTCCGGGCTCTCGGCTGCTGTTTGTGCATGCTCT  550

seq1  GGTCTTTCTTACGAGGCGTGCCAGCCACTTCTGTCTGATAACTGTAAGCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTCTTACGAGGCGTGCCAGCCACTTCTGTCTGATAACTGTAAGCC  600

seq1  GAGGGCATGATAGCTTGGTGTGGTCAGCATGATATTGACCCCAGTCCCAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATGATAGCTTGGTGTGGTCAGCATGATATTGACCCCAGTCCCAT  650

seq1  CGGGCTAGGACATACTAGCCCGCACAGGTGAGTCCTGTCGTCTTCCTGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTAGGACATACTAGCCCGCACAGGTGAGTCCTGTCGTCTTCCTGGG  700

seq1  GTAGTGCTAGAACCCTAGTTCAAGGATGTCTGGGGCCTTTGATCACTGCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCTAGAACCCTAGTTCAAGGATGTCTGGGGCCTTTGATCACTGCA  750

seq1  TGTGACCATAGTGACAGGGGAGATACTCAGTGTGTTCAGCACTTTGTCCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCATAGTGACAGGGGAGATACTCAGTGTGTTCAGCACTTTGTCCC  800

seq1  CTACCCTCCTATGTTGTTCCCTATGTCAGCCATGTAGGATGGTCCCTCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCCTATGTTGTTCCCTATGTCAGCCATGTAGGATGGTCCCTCTT  850

seq1  ATGGCACTAAAACTTAGTGTTGATCCACAGACCAAAGGCACATTGCCTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTAAAACTTAGTGTTGATCCACAGACCAAAGGCACATTGCCTCT  900

seq1  GGACACAGTTCCCACGAGATGGGCCCACTTACCTACCCCTCAGGGTGATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGTTCCCACGAGATGGGCCCACTTACCTACCCCTCAGGGTGATG  950

seq1  TAGTGGTCTGAGGTGGGCTGGCAAAGCTACAGGTGCATTGGTTGTTAGGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTCTGAGGTGGGCTGGCAAAGCTACAGGTGCATTGGTTGTTAGGG  1000

seq1  GTTCCTCAGAGAGGTTCTGTAACTGATGTGGGCTTTCTGTTCTTTTGGCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAGAGAGGTTCTGTAACTGATGTGGGCTTTCTGTTCTTTTGGCA  1050

seq1  GAACATACAACATCAGGACAGCATTTCAGAATTC  1075
      ||||||||||||||||||||||||||||||||||
seq2  GAACATACAACATCAGGACAGCATTTCAGAATTC  1084


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