BAC Information

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BAC

Clone NameB6Ng01-230E14
Chromosome8 (Build37)
Map Location 102,895,055 - 103,033,120
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230E14.bB6Ng01-230E14.g
ACCGA043189GA043190
length1,1421,103
definitionB6Ng01-230E14.b B6Ng01-230E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,895,055 - 102,896,192)(103,032,018 - 103,033,120)
sequence
gaattcatcttatgctgatagcttaacaaagactttaatgattttgctcc
tataagctctgacagtagaagatctactttcatcatactacttagaccct
cttgtcaccaatcaatcagttcctcaaatggtactaccatactacatatt
attattattcaatatacacatatatattcaattatatatctgaatttatg
agtgaaacagtacatctaacttgtttccttcagtgtcgtatttgagagat
ttactcggaacctcagaatgggaagaagagaggtttttaatctgcatata
aattctaattcataaataagctacttttaatttttctctaattatctctg
tttggagtagttatacctaaatttactaaaataaaagtaaatgggtacaa
aatgcggtcataaatattagtttctggtggataagaatccctggaatatt
ttaaacatatgtattcatgcatgcatgtttgtatctttatgcatgctgca
tacattctgtgtatataattacctgtttcaattcaatattcatatctcta
cttatatagttatcatttatttcttggcacctgtctatctgcctatctac
ttctgtatctgttatagttaatgaagaagctataagcagtttctcaaaat
aatttcaacaatttctacatccaatactgccactggagaagtcttttcag
tgtgctgatgatcacttagtatgggcctaatattgcattttacttatggg
tgagaagataagtgttatgctgttacagactgcatgtacatgcatgcatg
cacaaatcaataaaatacatattcgcaaaactagcagtcctgactatgtt
tgaacaccactatatagtttttgcctagtatattttttattgtattatac
ttaaatattctgacacattatatttcttttctcaatttctactgaaaggt
cttttattgaaactatgccttttagttggtctaatacagtttcagattct
tcttatttcttttagttggacttagatattctcttctcatattcaccttc
tccttatatctctgaggatagccttctcactctgcttcacaatggagtct
ctgtcaagcttattttctcatgtcagtatcatacttcttgtg

gaattcattttgtttccaattttagagagaaacacacacacacacacaca
catacacagagagagagagaaagagagagaacacaaacacaaagttgggt
cagtagggatagggaggtggataaatatgagaggagctgtgaaaaaggaa
caatatgatacaatatataaacatttatagataaaattttaaaaattaca
aaacaaaccaacttctctgctcccttattttacaaatatgttcctggtaa
catcaactattttgtaatatatttgagggtaactctttataagtatcaac
taagataacctgtggtggtttttttctttgtctgaccctgatgaaacatt
ctggtatgtttctatgctcagtaatataatcaagctttagaaagtacgag
gtgatggcattagctttatgtagaggaaatgttttgatccttagctacat
attaccaatttcaaggagcaacttcagagtggacactaagataacagctc
aattaaatttatgaatctcctaatattgtgtagagccaggaaacccttag
cagcatgaacatgttctaactaggtaatagcagatgattttattgaagga
aaaactctgtagatgacattcacacatatccagatgccataattcaatat
tgaagctttggagaatttgcaaataatgaaactgaatgtgtacagcctcg
gctagcatagcaaagcagcaattttttgcagtagattttatttgagtaga
cagaatacactctaaactactgataaaaataattactactggtattcaac
gcatgaaatttcatgttttatcagcttatattgttatgagttaggtaagt
ctgtttataccagttgtagaaacaacatacaatgaactacttaccaatta
ctagtacagtaggtgaataaacgttttttcgttccactattaatatggta
aagacacaattatggagcataactcttcgttgaccatacgttgtcatgca
atatatgtatttaatgatgatgacttcaaactttggtacctacagaccac
atcagttaatcattaatcaaaatgatggtgtgacaatatatttcctctct
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102895055_102896192
seq2: B6Ng01-230E14.b_46_1187

seq1  GAATTCATCTTATGCTGATAGCTTAACAAAGACTTTAATGATTTTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTATGCTGATAGCTTAACAAAGACTTTAATGATTTTGCTCC  50

seq1  TATAAGCTCTGACAGTAGAAGATCTACTTTCATCATACTACTTAGACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTCTGACAGTAGAAGATCTACTTTCATCATACTACTTAGACCCT  100

seq1  CTTGTCACCAATCAATCAGTTCCTCAAATGGTACTACCATACTACATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACCAATCAATCAGTTCCTCAAATGGTACTACCATACTACATATT  150

seq1  ATTATTATTCAATATACACATATATATTCAATTATATATCTGAATTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTCAATATACACATATATATTCAATTATATATCTGAATTTATG  200

seq1  AGTGAAACAGTACATCTAACTTGTTTCCTTCAGTGTCGTATTTGAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACAGTACATCTAACTTGTTTCCTTCAGTGTCGTATTTGAGAGAT  250

seq1  TTACTCGGAACCTCAGAATGGGAAGAAGAGAGGTTTTTAATCTGCATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGGAACCTCAGAATGGGAAGAAGAGAGGTTTTTAATCTGCATATA  300

seq1  AATTCTAATTCATAAATAAGCTACTTTTAATTTTTCTCTAATTATCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATTCATAAATAAGCTACTTTTAATTTTTCTCTAATTATCTCTG  350

seq1  TTTGGAGTAGTTATACCTAAATTTACTAAAATAAAAGTAAATGGGTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTAGTTATACCTAAATTTACTAAAATAAAAGTAAATGGGTACAA  400

seq1  AATGCGGTCATAAATATTAGTTTCTGGTGGATAAGAATCCCTGGAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGGTCATAAATATTAGTTTCTGGTGGATAAGAATCCCTGGAATATT  450

seq1  TTAAACATATGTATTCATGCATGCATGTTTGTATCTTTATGCATGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATATGTATTCATGCATGCATGTTTGTATCTTTATGCATGCTGCA  500

seq1  TACATTCTGTGTATATAATTACCTGTTTCAATTCAATATTCATATCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTGTGTATATAATTACCTGTTTCAATTCAATATTCATATCTCTA  550

seq1  CTTATATAGTTATCATTTATTTCTTGGCACCTGTCTATCTGCCTATCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAGTTATCATTTATTTCTTGGCACCTGTCTATCTGCCTATCTAC  600

seq1  TTCTGTATCTGTTATAGTTAATGAAGAAGCTATAAGCAGTTTCTCAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCTGTTATAGTTAATGAAGAAGCTATAAGCAGTTTCTCAAAAT  650

seq1  AATTTCAACAATTTCTACATCCAATACTGCCACTGGAGAAGTCTTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAACAATTTCTACATCCAATACTGCCACTGGAGAAGTCTTTTCAG  700

seq1  TGTGCTGATGATCACTTAGTATGGGCCTAATATTGCATTTTACTTATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGATGATCACTTAGTATGGGCCTAATATTGCATTTTACTTATGGG  750

seq1  TGAGAAGATAAGTGTTATGCTGTTACAGACTGCATGTACATGCATGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGATAAGTGTTATGCTGTTACAGACTGCATGTACATGCATGCATG  800

seq1  CACAAATCAATAAAATACATATTCGCAAAACTAGCAGTCCTGACTATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCAATAAAATACATATTCGCAAAACTAGCAGTCCTGACTATGTT  850

seq1  TGAACACCACTATATAGTTTTTGCCTAGTATATTTTTTATTGTATTATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCACTATATAGTTTTTGCCTAGTATATTTTTTATTGTATTATAC  900

seq1  TTAAATATTCTGACACATTATATTTC-TTTCTCAA-TTCTACTGAAAGGT  948
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TTAAATATTCTGACACATTATATTTCTTTTCTCAATTTCTACTGAAAGGT  950

seq1  C-TTTATTGAAACTATGCCTTTTAGTGGTTCTAATACAGTTTCAGATTC-  996
      | |||||||||||||||||||||||| | |||||||||||||||||||| 
seq2  CTTTTATTGAAACTATGCCTTTTAGTTGGTCTAATACAGTTTCAGATTCT  1000

seq1  TCTTATTTCTTTTAGTTTGACTTAGATATTTCTCTTCTCATA-TCACCTT  1045
      ||||||||||||||||| |||||||||| ||||||||||||| |||||||
seq2  TCTTATTTCTTTTAGTTGGACTTAGATA-TTCTCTTCTCATATTCACCTT  1049

seq1  CTCCTTATATCTCTTGAGGATAAGCCTCTCACTCTGCTTCACAATGGAGT  1095
      ||||||||||||| ||||||||  | ||||||||||||||||||||||||
seq2  CTCCTTATATCTC-TGAGGATAGCCTTCTCACTCTGCTTCACAATGGAGT  1098

seq1  CTCTGTCAGGCTTATTTCTCCATGTCAGTATCATAC-TCTTGTG  1138
      |||||||| ||||||||   |||||||||||||||| |||||||
seq2  CTCTGTCAAGCTTATTTTCTCATGTCAGTATCATACTTCTTGTG  1142


seq1: chr8_103032018_103033120
seq2: B6Ng01-230E14.g_67_1169 (reverse)

seq1  ATCAGAAGAGAAATATATTGTCACACCATCATATTTGAATTAAATTGATT  50
      ||||||   ||||||||||||||||||||||| |||| |||||  |||||
seq2  ATCAGAGAGGAAATATATTGTCACACCATCAT-TTTG-ATTAA--TGATT  46

seq1  AACTGATGTGTCTTGTTAGGTTACAAAGTTTGAAGTCATCATCA-TAAAT  99
      ||||||||||   || |||||  ||||||||||||||||||||| |||||
seq2  AACTGATGTGGTCTG-TAGGTACCAAAGTTTGAAGTCATCATCATTAAAT  95

seq1  ACATATATTGCATGACAACGTTATGGTCAACGAAGAGTTATGCT-CATAA  148
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  ACATATATTGCATGACAACG-TATGGTCAACGAAGAGTTATGCTCCATAA  144

seq1  TTGTGTC-TTACCATATT-ATAGTGGAACG-AAAAACGTTTA-TCACCTA  194
      ||||||| |||||||||| ||||||||||| ||||||||||| |||||||
seq2  TTGTGTCTTTACCATATTAATAGTGGAACGAAAAAACGTTTATTCACCTA  194

seq1  CTGTACTAGTAATTGTAAAGTAGTTCATTGTATGTTGTTTCTACAACTGG  244
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CTGTACTAGTAATTGGTAAGTAGTTCATTGTATGTTGTTTCTACAACTGG  244

seq1  TATAAACAGACTTACCTAACTCATAACAATATAAGCTGATAAAACATGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAGACTTACCTAACTCATAACAATATAAGCTGATAAAACATGAA  294

seq1  ATTTCATGCGTTGAATACCAGTAGTAATTATTTTTATCAGTAGTTTAGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCGTTGAATACCAGTAGTAATTATTTTTATCAGTAGTTTAGAG  344

seq1  TGTATTCTGTCTACTCAAATAAAATCTACTGCAAAAAATTGCTGCTTTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGTCTACTCAAATAAAATCTACTGCAAAAAATTGCTGCTTTGC  394

seq1  TATGCTAGCCGAGGCTGTACACATTCAGTTTCATTATTTGCAAATTCTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGCCGAGGCTGTACACATTCAGTTTCATTATTTGCAAATTCTCC  444

seq1  AAAGCTTCAATATTGAATTATGGCATCTGGATATGTGTGAATGTCATCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCAATATTGAATTATGGCATCTGGATATGTGTGAATGTCATCTA  494

seq1  CAGAGTTTTTCCTTCAATAAAATCATCTGCTATTACCTAGTTAGAACATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTTTCCTTCAATAAAATCATCTGCTATTACCTAGTTAGAACATG  544

seq1  TTCATGCTGCTAAGGGTTTCCTGGCTCTACACAATATTAGGAGATTCATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTGCTAAGGGTTTCCTGGCTCTACACAATATTAGGAGATTCATA  594

seq1  AATTTAATTGAGCTGTTATCTTAGTGTCCACTCTGAAGTTGCTCCTTGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTGAGCTGTTATCTTAGTGTCCACTCTGAAGTTGCTCCTTGAA  644

seq1  ATTGGTAATATGTAGCTAAGGATCAAAACATTTCCTCTACATAAAGCTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAATATGTAGCTAAGGATCAAAACATTTCCTCTACATAAAGCTAA  694

seq1  TGCCATCACCTCGTACTTTCTAAAGCTTGATTATATTACTGAGCATAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCACCTCGTACTTTCTAAAGCTTGATTATATTACTGAGCATAGAA  744

seq1  ACATACCAGAATGTTTCATCAGGGTCAGACAAAGAAAAAAACCACCACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCAGAATGTTTCATCAGGGTCAGACAAAGAAAAAAACCACCACAG  794

seq1  GTTATCTTAGTTGATACTTATAAAGAGTTACCCTCAAATATATTACAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTTAGTTGATACTTATAAAGAGTTACCCTCAAATATATTACAAAA  844

seq1  TAGTTGATGTTACCAGGAACATATTTGTAAAATAAGGGAGCAGAGAAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGATGTTACCAGGAACATATTTGTAAAATAAGGGAGCAGAGAAGTT  894

seq1  GGTTTGTTTTGTAATTTTTAAAATTTTATCTATAAATGTTTATATATTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTTGTAATTTTTAAAATTTTATCTATAAATGTTTATATATTGT  944

seq1  ATCATATTGTTCCTTTTTCACAGCTCCTCTCATATTTATCCACCTCCCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTGTTCCTTTTTCACAGCTCCTCTCATATTTATCCACCTCCCTA  994

seq1  TCCCTACTGACCCAACTTTGTGTTTGTGTTCTCTCTCTTTCTCTCTCTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTGACCCAACTTTGTGTTTGTGTTCTCTCTCTTTCTCTCTCTCT  1044

seq1  CTGTGTATGTGTGTGTGTGTGTGTGTGTTTCTCTCTAAAATTGGAAACAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTGTGTGTGTGTGTGTGTGTTTCTCTCTAAAATTGGAAACAA  1094

seq1  AATGAATTC  1103
      |||||||||
seq2  AATGAATTC  1103


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