BAC Information

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BAC

Clone NameB6Ng01-230E22
Chromosome8 (Build37)
Map Location 26,988,517 - 27,146,476
singlet/doubletdoublet
Overlap geneKcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3
Upstream geneAdam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l
Downstream gene1700047A11Rik, Rnf170, Thap1, Zfp703, Erlin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230E22.bB6Ng01-230E22.g
ACCGA043205GA043206
length1,1181,133
definitionB6Ng01-230E22.b B6Ng01-230E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,988,517 - 26,989,159)(27,145,363 - 27,146,476)
sequence
gaattcttcatctgcttcagaactactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaattgatctttcttcttt
tccctttttcctctttttcttctaatctctctccaggtattcctacctaa
ccttaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatatttcctctttgttcctactctctctccccgctttact
tctgatagcttgtcctgaatttcatctagaatcttcagccctatcttaat
cacttgataacatgtgaaaaggaacaaaagggctcctaacaccagaaaaa
attcaaggccaaacattttccactttacttctgatagactgtcttgaatt
tcgttagaaagttcaagatcagacttacctcgtaaagctgtactcactgg
tactctcgttccccagctgaaaagttctgaattcatacagttgaatcctt
cttaacagtctgctttacgggaacctttattaccgcgacccgcagttctg
gttctggaatgagggatcttccttgcgccagtcccgagtttttttctcgt
cccggaattcggcaccaattgttattagacgcgttctcacgaccggccag
gaagaacaccacagaccagaatcttctgcggcaaagctttattgcttaca
tcttcaggagccagagtgtaagaagccagagagagcgagaagcaagagag
cgagaaaacgaaaccccgtccctcttaaggagcattctccttcgcctcgg
acgtgtcactccctgattggctgcagcccatcggccgagttgacgtcacg
gggaaggcagagcacaagtagtcataagatacccttggcacatgcgcaga
ttatttgtttaccacttagaacacagctgtcagcgccatcttgtaacggc
gaatggtgggcgcggctcccaacaggataatactgatgtctgtgtgagat
attacaaagatggattttagttcaatgcactctctcaaaatatgagagca
ggtgggtggcacacaacctttatcagtactcaggcctctgttgagtccga
gcagctggtcttacagaa
gaattctttctaacacacaagagagtgttgggaggagaacatacatgaca
gcttaccaattggtaaatccaactcaaaaataaatggatttgaactatat
gaaggtctgtctgtttgaacattttgataataaaactattggtgaagaac
aaaatgacctctctcccagaaatttgtaatgagtcaggtagaatcgcatc
ccatgttcatgcctcaagcatagtactcacagaagagacaggcctgtgta
agagtcaccctgtgtgcctttctggttatatacccagagctagctgcaat
aaaacagacagagctgtgaatagcatctctttagcatctcttcagcaatg
tccagtaatccagaatggctcttctgtctgtgtcattggaaatttgcaga
atttttattttactccattcgtttacattcttaggtgtccttgatagctt
ttgcatatttttcttttctgctttctttgattgggatagggatgctagga
attagtaacagaacttcatgcatgctatggtagtgatatctatagctgtg
tacacgttagctcagtagtggggattgacctagggccccatgtgtattag
gcatgcactgtagcactgggctgtatcctctgcctcattttcactcttaa
gactgctttcttagatgctagattcttagcgtttgaggggggttgtttct
gttttaatttttatgttctctgtgtgaatatatatatgtatgctttgttt
ttcttatgtttttgcaggttatccgtacattagaccctaaacagaatcaa
ggagcagcaccagaaattcaagctcttaaaaatcaactgcaggaacgggg
accgactctttccactcattagaggtcagtctacactgcaccgtaaaaat
actgccctgctataagcatacaattgtattctttgggtttaagacaatta
atttgcaaatatttttttatattgaactcatttgtatctttacatggtgg
ttatgccttcagaaagattatgagaaaaccgaagagtccaaagaagaatg
ggagaagaaatcacttggttagtgccctgggtacaatatggaagagaaca
tattttccaaatattaatgtcaaaggtttggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26988517_26989159
seq2: B6Ng01-230E22.b_523_1163

seq1  TGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTT  50

seq1  TATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCG  100

seq1  CCAGTCCCGAGTTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCGAGTTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTA  150

seq1  GACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCT  200

seq1  GCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGTAAGAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGTAAGAAGCC  250

seq1  AGAGAGAGCGAGAAGCAAGAGAGCGAGAAAACGAAACCCCGTCCCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCGAGAAGCAAGAGAGCGAGAAAACGAAACCCCGTCCCTCTTA  300

seq1  AGGAGCATTCTCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATTCTCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGC  350

seq1  CCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAA  400

seq1  GATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGC  450

seq1  TGTCAGCGCCATCTTGTAACGGCGAAT-GTGGGCGCGGCTCCCAACAGGA  499
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCAGCGCCATCTTGTAACGGCGAATGGTGGGCGCGGCTCCCAACAGGA  500

seq1  TAATACTGATGTCTGTGTTGAGATATTACCAAAGATGGATTTTAGTTCAA  549
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TAATACTGATGTCTGTG-TGAGATATTA-CAAAGATGGATTTTAGTTCAA  548

seq1  TGCACTCTCTCAAAATATGAGAGCCAGGT-GGTGGCACACACCTTTAATT  598
      ||||||||||||||||||||||| ||||| ||||||||||| | || || 
seq2  TGCACTCTCTCAAAATATGAGAG-CAGGTGGGTGGCACACAACCTTTAT-  596

seq1  CCAGTACTCAG--CTCTG-TGAGTTCGAGGCCAGCCTGGTC-TACAGAA  643
       ||||||||||  ||||| ||||| ||||  ||| |||||| |||||||
seq2  -CAGTACTCAGGCCTCTGTTGAGTCCGAG--CAG-CTGGTCTTACAGAA  641

seq1: chr8_27145363_27146476
seq2: B6Ng01-230E22.g_68_1200 (reverse)

seq1  CACCAAA-CTTTG-CATT-ATATTTTG-AAATATGTTCTCTTACCATATT  46
      ||||||| ||||| |||| |||||| | |||||||||||||| |||||||
seq2  CACCAAACCTTTGACATTAATATTTGGAAAATATGTTCTCTT-CCATATT  49

seq1  GTACC--AGGCACTAACAATGT-ATTTCTCCT-CCATGTCTCTTT-GACT  91
      |||||   ||||||||| | || |||||| || ||||   ||||| ||||
seq2  GTACCCAGGGCACTAACCAAGTGATTTCTTCTCCCATTCTTCTTTGGACT  99

seq1  CTTC-GTTTTCTCATATTCTTTCTGAA-GCATAACCA-CATGTAAAGATA  138
      |||| ||||||||||| |||||||||| ||||||||| ||||||||||||
seq2  CTTCGGTTTTCTCATAATCTTTCTGAAGGCATAACCACCATGTAAAGATA  149

seq1  CAAATGAGTTCAATAT-AAAAAATATTTGC-AATTAATTGTCT--AAACC  184
      |||||||||||||||| ||||||||||||| ||||||||||||  || ||
seq2  CAAATGAGTTCAATATAAAAAAATATTTGCAAATTAATTGTCTTAAACCC  199

seq1  AAAGAATACAATTGTATGC-TATAGCAGGGCAGTA-TTTTACGGTGCAGT  232
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AAAGAATACAATTGTATGCTTATAGCAGGGCAGTATTTTTACGGTGCAGT  249

seq1  GTAGACTGACCTCTAATGAGTGG-AAGAGTCGGT-CCCGTTCCTGCAGTT  280
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  GTAGACTGACCTCTAATGAGTGGAAAGAGTCGGTCCCCGTTCCTGCAGTT  299

seq1  GATTTTTAAGAGCTTGAATTTCTGGTGCTGCTCCTTGATTCTGTTTAGGG  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAGAGCTTGAATTTCTGGTGCTGCTCCTTGATTCTGTTTAGGG  349

seq1  TCTAATGTACGGATAACCTGCAAAAACATAAGAAAAACAAAGCATACATA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTACGGATAACCTGCAAAAACATAAGAAAAACAAAGCATACATA  399

seq1  TATATATTCACACAGAGAACATAAAAATTAAAACAGAAACAACCCCCCTC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCACACAGAGAACATAAAAATTAAAACAGAAACAACCCCCCTC  449

seq1  AAACGCTAAGAATCTAGCATCTAAGAAAGCAGTCTTAAGAGTGAAAATGA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTAAGAATCTAGCATCTAAGAAAGCAGTCTTAAGAGTGAAAATGA  499

seq1  GGCAGAGGATACAGCCCAGTGCTACAGTGCATGCCTAATACACATGGGGC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGATACAGCCCAGTGCTACAGTGCATGCCTAATACACATGGGGC  549

seq1  CCTAGGTCAATCCCCACTACTGAGCTAACGTGTACACAGCTATAGATATC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCAATCCCCACTACTGAGCTAACGTGTACACAGCTATAGATATC  599

seq1  ACTACCATAGCATGCATGAAGTTCTGTTACTAATTCCTAGCATCCCTATC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCATAGCATGCATGAAGTTCTGTTACTAATTCCTAGCATCCCTATC  649

seq1  CCAATCAAAGAAAGCAGAAAAGAAAAATATGCAAAAGCTATCAAGGACAC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAAGAAAGCAGAAAAGAAAAATATGCAAAAGCTATCAAGGACAC  699

seq1  CTAAGAATGTAAACGAATGGAGTAAAATAAAAATTCTGCAAATTTCCAAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATGTAAACGAATGGAGTAAAATAAAAATTCTGCAAATTTCCAAT  749

seq1  GACACAGACAGAAGAGCCATTCTGGATTACTGGACATTGCTGAAGAGATG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGACAGAAGAGCCATTCTGGATTACTGGACATTGCTGAAGAGATG  799

seq1  CTAAAGAGATGCTATTCACAGCTCTGTCTGTTTTATTGCAGCTAGCTCTG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGATGCTATTCACAGCTCTGTCTGTTTTATTGCAGCTAGCTCTG  849

seq1  GGTATATAACCAGAAAGGCACACAGGGTGACTCTTACACAGGCCTGTCTC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATAACCAGAAAGGCACACAGGGTGACTCTTACACAGGCCTGTCTC  899

seq1  TTCTGTGAGTACTATGCTTGAGGCATGAACATGGGATGCGATTCTACCTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGTACTATGCTTGAGGCATGAACATGGGATGCGATTCTACCTG  949

seq1  ACTCATTACAAATTTCTGGGAGAGAGGTCATTTTGTTCTTCACCAATAGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTACAAATTTCTGGGAGAGAGGTCATTTTGTTCTTCACCAATAGT  999

seq1  TTTATTATCAAAATGTTCAAACAGACAGACCTTCATATAGTTCAAATCCA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATCAAAATGTTCAAACAGACAGACCTTCATATAGTTCAAATCCA  1049

seq1  TTTATTTTTGAGTTGGATTTACCAATTGGTAAGCTGTCATGTATGTTCTC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGAGTTGGATTTACCAATTGGTAAGCTGTCATGTATGTTCTC  1099

seq1  CTCCCAACACTCTCTTGTGTGTTAGAAAGAATTC  1114
      ||||||||||||||||||||||||||||||||||
seq2  CTCCCAACACTCTCTTGTGTGTTAGAAAGAATTC  1133