BAC Information

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BAC

Clone NameB6Ng01-231A12
Chromosome8 (Build37)
Map Location 100,974,475 - 100,975,671
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231A12.bB6Ng01-231A12.g
ACCGA043739GA043740
length3231,171
definitionB6Ng01-231A12.b B6Ng01-231A12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgaggaggacactgtctcagaggcaaaggggaaggcagatccagtgcaga
actctgtgagcgaggatatggagtaggtacaatatttgggatgtcccagg
gactgaaccaacaagcaaagaatacacagggagtgacctgtggctctggc
cacataggtgtcagaggatggccttgttggacatcagtgggaggagaggc
ccttgggtctgagggtgtttgatgctcctgtgtaggagaatgccaggaca
agaaaacaggagtatcctggtgggtgggggaacatcctcatagaggcagg
gggagggggaatggggaaagagg
gaattctcatgcctcgggattatgaacaatgataaagattctagtagtta
caactgaataaataaattaaaatggatttaaatgctaaaattgtacacaa
taaatacaggaactcaattattaactatactttgatttttaagatcttgg
ggtatttttttcataatagaaatgaggaaatgtggttacaagtaactaga
aaatcctctccaattctgaaaatgtctagaaatatggaaaatacttgacc
aaggaatctgagacctggatagcgcttttgggtgtcatttctccctgcca
taagttatgacatcaaattattgtgatatttttgtaaactctagtaaatg
ctgtgttgaaaaagttgtattaaaggaaaaacacaaagaaaaaaacagaa
tagtgaaaataatttttaacaataaaataacttctgaggaaatcgccatc
cctgacctcaaggtataatacagagcaatagtgattaaaaaaaaaaaaaa
aacaaaaaactgcatggtattggtacagagaccgacatgatgatcaactg
aacagaattgaagacccagaaataaagccacacactactgacaattgatt
tttgaaaaagccaaaaatatacaatggaaaaaagaaagcatcctcaataa
acggtgctggtctaactggcagtttgtgtgtaggaaaatgaaaatagatc
catatttgtcaccttgcccaaagttcaagttcaagtggatcaacgatctt
aacataaaaccagataaactggattataatcgaagagtaagtagggaaga
gcctcaaactcattggcaggtagaaatttcctaaaaagaagtccaatggc
tcaggctctaagatcaagaattgataaataggacctcatgaaactaggaa
gaatctgtaaaggcaaaggacatagtcaataggataaatttgcaacctac
agattggggaaaatcttcagaaaattgtacttaaataaaaataaatggtt
tccaatataagtatattcactttagatttgtaaatgaatcaagaacagca
tgccgctttcatttttcttatataggaccttatatttgctgagatctcaa
ttccatctatcaatgatacttctcttgctcttaagaatgtcaatgagtat
ccggactgaattcatcagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_100974475_100975671
seq2: B6Ng01-231A12.g_68_1238 (reverse)

seq1  TGACTGATGAATTCAAGCTCTGATTACTCATTTTGAACCATTCTCTAAAA  50
      |||||||||||||||   || |  ||||||  ||||  |||||| |||  
seq2  TGACTGATGAATTCA--GTCCGGATACTCA--TTGA--CATTCT-TAA--  41

seq1  AAGAAGCAAGAGAAGTAATCATTGATAGATTTGAAATTGAGATTCTTCAG  100
          |||||||||||| ||||||||||||  || |||||||||   ||||
seq2  ---GAGCAAGAGAAGT-ATCATTGATAGA--TGGAATTGAGAT--CTCAG  83

seq1  CAAAATATAAAGT-CTATATAAGAAAAATTGAAAAGCGGCCATTGCTGTT  149
      | |||||||| || |||||||||||||||   ||||||||   |||||||
seq2  C-AAATATAAGGTCCTATATAAGAAAAAT--GAAAGCGGC--ATGCTGTT  128

seq1  CTTTGATTCATTTACAAAATCTTAAAGTGAATATACTTTAATATTGAAAC  199
      | ||||||||||||| ||||| ||||||||||||||||  |||||| || 
seq2  C-TTGATTCATTTAC-AAATC-TAAAGTGAATATACTT--ATATTGGAAA  173

seq1  CCATTTATTTTTATTTAAAGTACAATTTTCTGAAGATTTTCCCCAATCTG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATTTATTTTTATTT-AAGTACAATTTTCTGAAGATTTTCCCCAATCTG  222

seq1  TAGGTTGCAAATTTATCCTATTGACTATGTCCTTTGCC-TTACAGATTCT  298
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGGTTGCAAATTTATCCTATTGACTATGTCCTTTGCCTTTACAGATTCT  272

seq1  TCCTAGTTTCATGAGGTCCTATTTATCAATTCTTGATCTTAGAGCCTGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTTCATGAGGTCCTATTTATCAATTCTTGATCTTAGAGCCTGAG  322

seq1  CCATTGGACTTCTTTTTAGGAAATTTCTACCTGCCAATGAGTTTGAGGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGACTTCTTTTTAGGAAATTTCTACCTGCCAATGAGTTTGAGGCT  372

seq1  CTTCCCTACTTACTCTTCGATTATAATCCAGTTTATCTGGTTTTATGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTACTTACTCTTCGATTATAATCCAGTTTATCTGGTTTTATGTTA  422

seq1  AGATCGTTGATCCACTTGAACTTGAACTTTGGGCAAGGTGACAAATATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTTGATCCACTTGAACTTGAACTTTGGGCAAGGTGACAAATATGG  472

seq1  ATCTATTTTCATTTTCCTACACACAAACTGCCAGTTAGACCAGCACCGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTCATTTTCCTACACACAAACTGCCAGTTAGACCAGCACCGTT  522

seq1  TATTGAGGATGCTTTCTTTTTTCCATTGTATATTTTTGGCTTTTTCAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGATGCTTTCTTTTTTCCATTGTATATTTTTGGCTTTTTCAAAA  572

seq1  ATCAATTGTCAGTAGTGTGTGGCTTTATTTCTGGGTCTTCAATTCTGTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGTCAGTAGTGTGTGGCTTTATTTCTGGGTCTTCAATTCTGTTC  622

seq1  AGTTGATCATCATGTCGGTCTCTGTACCAATACCATGCAGTTTTTTGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATCATCATGTCGGTCTCTGTACCAATACCATGCAGTTTTTTGTTT  672

seq1  TTTTTTTTTTTTTAATCACTATTGCTCTGTATTATACCTTGAGGTCAGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAATCACTATTGCTCTGTATTATACCTTGAGGTCAGGG  722

seq1  ATGGCGATTTCCTCAGAAGTTATTTTATTGTTAAAAATTATTTTCACTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGATTTCCTCAGAAGTTATTTTATTGTTAAAAATTATTTTCACTAT  772

seq1  TCTGTTTTTTTCTTTGTGTTTTTCCTTTAATACAACTTTTTCAACACAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTTTCTTTGTGTTTTTCCTTTAATACAACTTTTTCAACACAGC  822

seq1  ATTTACTAGAGTTTACAAAAATATCACAATAATTTGATGTCATAACTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAGAGTTTACAAAAATATCACAATAATTTGATGTCATAACTTAT  872

seq1  GGCAGGGAGAAATGACACCCAAAAGCGCTATCCAGGTCTCAGATTCCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAGAAATGACACCCAAAAGCGCTATCCAGGTCTCAGATTCCTTG  922

seq1  GTCAAGTATTTTCCATATTTCTAGACATTTTCAGAATTGGAGAGGATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTATTTTCCATATTTCTAGACATTTTCAGAATTGGAGAGGATTTT  972

seq1  CTAGTTACTTGTAACCACATTTCCTCATTTCTATTATGAAAAAAATACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACTTGTAACCACATTTCCTCATTTCTATTATGAAAAAAATACCC  1022

seq1  CAAGATCTTAAAAATCAAAGTATAGTTAATAATTGAGTTCCTGTATTTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTTAAAAATCAAAGTATAGTTAATAATTGAGTTCCTGTATTTAT  1072

seq1  TGTGTACAATTTTAGCATTTAAATCCATTTTAATTTATTTATTCAGTTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAATTTTAGCATTTAAATCCATTTTAATTTATTTATTCAGTTGT  1122

seq1  AACTACTAGAATCTTTATCATTGTTCATAATCCCGAGGCATGAGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTAGAATCTTTATCATTGTTCATAATCCCGAGGCATGAGAATTC  1171