BAC Information

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BAC

Clone NameB6Ng01-231J04
Chromosome8 (Build37)
Map Location 107,701,005 - 107,859,246
singlet/doubletdoublet
Overlap geneCbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1
Upstream geneBean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408
Downstream geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231J04.bB6Ng01-231J04.g
ACCGA044138GA044139
length543866
definitionB6Ng01-231J04.b B6Ng01-231J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,701,005 - 107,701,553)(107,858,381 - 107,859,246)
sequence
atacctagatgactttaaaacattatatatgatggccacgggccagaaaa
gggcactggaccctctagaactgaagttacaaatgattgtgagccaccac
aagaaggtttagaatccagctcagaccctctgggagagtatacagtgttc
tagagaactgagccatctctccagcccctgaaatgtattgtgggtttttt
gttttgttttgtttttgtttttgtttcaagctggtctcacagtgtatctc
tggctgtcctggaactcattgtgtagaccaggttggcctcaaactcagag
aaatctgcctgcttctgcctcccaagtgctgagatgaaaggcatgtgcca
ctgtgcaaagctgaaaatgtgtttttgtttttggggttttgttttgggtt
tgttttgttttgttttgttttgaaatacagcttttgagctgaagagatgg
ctcagcagttcagagcactggctgctcttccagaggtcctgagttcaatt
cccagcaaccacatggtggctcacaaccatctgtaatggaatc
gaattcaaggtcatcttcagctacatagtaactttggaatagtctgacct
acctgagactttgtctcaaaaagaaaaaaaagaggaggttgagaagaaga
gaggaaaggaagggaagacacaaataggtagcatttatatttcaacacaa
attgagtgcacactgttaacagagccttttctccactgtaactcccaaaa
gcagacaggcctgtaagaagtctgttgtgcctgttgggacaactatctcc
ttccctaactctaaggatcttatttagaatcgggacaatgaacatagatt
ccttaacaaggtttcaagttagatgtcagtagaacttctgtactttgacc
aagaacagcgagttggttgtaactcctgggatatgggttggcgggttggc
agaggtatacctagtgcatggactgtcccacgtgcctgtgtgtgcttgca
actgagggcagtgcccagtggctcagcaaggcatgtgtgccaccctgggc
tggacttgggtcagacaccaccgttgacatgcctctctcttcagagcccg
gttcctggagaatgtggcggcagcagagacggagaagcaggctgctctgg
cccaaggccgagcggagacgctggctggagccacggtagatgacactgat
ggatcatcaggtgggtgatgctcaggcagaatccagccgctaaagaaacc
aaccctggggaccggagagagggctcagttggcagccgagagaggtcctg
cattgggttcccaacactcacatggaagttcacaagggcctaataactct
agtttggggaaatcccatgctgccttcttaataattgtttctgtttttca
agagtgggtttctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107701005_107701553
seq2: B6Ng01-231J04.b_42_590

seq1  GAATTCATACCTAGATGACTTTAAAACATTATATATGATGGCCACGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCTAGATGACTTTAAAACATTATATATGATGGCCACGGGCC  50

seq1  AGAAAAGGGCACTGGACCCTCTAGAACTGAAGTTACAAATGATTGTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGCACTGGACCCTCTAGAACTGAAGTTACAAATGATTGTGAGC  100

seq1  CACCACAAGAAGGTTTAGAATCCAGCTCAGACCCTCTGGGAGAGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAAGAAGGTTTAGAATCCAGCTCAGACCCTCTGGGAGAGTATACA  150

seq1  GTGTTCTAGAGAACTGAGCCATCTCTCCAGCCCCTGAAATGTATTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAGAGAACTGAGCCATCTCTCCAGCCCCTGAAATGTATTGTGGG  200

seq1  TTTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTCAAGCTGGTCTCACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTCAAGCTGGTCTCACAGTG  250

seq1  TATCTCTGGCTGTCCTGGAACTCATTGTGTAGACCAGGTTGGCCTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGGCTGTCCTGGAACTCATTGTGTAGACCAGGTTGGCCTCAAAC  300

seq1  TCAGAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCTGAGATGAAAGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCTGAGATGAAAGGCAT  350

seq1  GTGCCACTGTGCAAAGCTGAAAATGTGTTTTTGTTTTTGGGGTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTGTGCAAAGCTGAAAATGTGTTTTTGTTTTTGGGGTTTTGTTT  400

seq1  TGGGTTTGTTTTGTTTTGTTTTGTTTTGAAATACAGCTTTTGAGCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGTTTTGTTTTGTTTTGTTTTGAAATACAGCTTTTGAGCTGAAG  450

seq1  AGATGGCTCAGCAGTTCAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGCAGTTCAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGT  500

seq1  TCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATC  549

seq1: chr8_107858381_107859246
seq2: B6Ng01-231J04.g_66_931 (reverse)

seq1  CAGAGAAACCCACTCTTGAAAAACAGAAACAATTATTAAGAAGGCAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCACTCTTGAAAAACAGAAACAATTATTAAGAAGGCAGCAT  50

seq1  GGGATTTCCCCAAACTAGAGTTATTAGGCCCTTGTGAACTTCCATGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCCCCAAACTAGAGTTATTAGGCCCTTGTGAACTTCCATGTGAG  100

seq1  TGTTGGGAACCCAATGCAGGACCTCTCTCGGCTGCCAACTGAGCCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAACCCAATGCAGGACCTCTCTCGGCTGCCAACTGAGCCCTCTC  150

seq1  TCCGGTCCCCAGGGTTGGTTTCTTTAGCGGCTGGATTCTGCCTGAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTCCCCAGGGTTGGTTTCTTTAGCGGCTGGATTCTGCCTGAGCATC  200

seq1  ACCCACCTGATGATCCATCAGTGTCATCTACCGTGGCTCCAGCCAGCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTGATGATCCATCAGTGTCATCTACCGTGGCTCCAGCCAGCGTC  250

seq1  TCCGCTCGGCCTTGGGCCAGAGCAGCCTGCTTCTCCGTCTCTGCTGCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCGGCCTTGGGCCAGAGCAGCCTGCTTCTCCGTCTCTGCTGCCGC  300

seq1  CACATTCTCCAGGAACCGGGCTCTGAAGAGAGAGGCATGTCAACGGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTCCAGGAACCGGGCTCTGAAGAGAGAGGCATGTCAACGGTGGT  350

seq1  GTCTGACCCAAGTCCAGCCCAGGGTGGCACACATGCCTTGCTGAGCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCCAAGTCCAGCCCAGGGTGGCACACATGCCTTGCTGAGCCACT  400

seq1  GGGCACTGCCCTCAGTTGCAAGCACACACAGGCACGTGGGACAGTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGCCCTCAGTTGCAAGCACACACAGGCACGTGGGACAGTCCATG  450

seq1  CACTAGGTATACCTCTGCCAACCCGCCAACCCATATCCCAGGAGTTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTATACCTCTGCCAACCCGCCAACCCATATCCCAGGAGTTACAA  500

seq1  CCAACTCGCTGTTCTTGGTCAAAGTACAGAAGTTCTACTGACATCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCGCTGTTCTTGGTCAAAGTACAGAAGTTCTACTGACATCTAACT  550

seq1  TGAAACCTTGTTAAGGAATCTATGTTCATTGTCCCGATTCTAAATAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTTGTTAAGGAATCTATGTTCATTGTCCCGATTCTAAATAAGAT  600

seq1  CCTTAGAGTTAGGGAAGGAGATAGTTGTCCCAACAGGCACAACAGACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGTTAGGGAAGGAGATAGTTGTCCCAACAGGCACAACAGACTTC  650

seq1  TTACAGGCCTGTCTGCTTTTGGGAGTTACAGTGGAGAAAAGGCTCTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCCTGTCTGCTTTTGGGAGTTACAGTGGAGAAAAGGCTCTGTTA  700

seq1  ACAGTGTGCACTCAATTTGTGTTGAAATATAAATGCTACCTATTTGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGCACTCAATTTGTGTTGAAATATAAATGCTACCTATTTGTGTC  750

seq1  TTCCCTTCCTTTCCTCTCTTCTTCTCAACCTCCTCTTTTTTTTCTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCTTTCCTCTCTTCTTCTCAACCTCCTCTTTTTTTTCTTTTTG  800

seq1  AGACAAAGTCTCAGGTAGGTCAGACTATTCCAAAGTTACTATGTAGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGTCTCAGGTAGGTCAGACTATTCCAAAGTTACTATGTAGCTGA  850

seq1  AGATGACCTTGAATTC  866
      ||||||||||||||||
seq2  AGATGACCTTGAATTC  866