BAC Information

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BAC

Clone NameB6Ng01-232O08
Chromosome8 (Build37)
Map Location 23,618,162 - 23,752,427
singlet/doubletdoublet
Overlap geneSlc20a2, LOC100040803, Vdac3, Dkk4, Polb
Upstream geneDefcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807
Downstream geneIkbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232O08.bB6Ng01-232O08.g
ACCGA045116GA045117
length1,139923
definitionB6Ng01-232O08.b B6Ng01-232O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,751,294 - 23,752,427)(23,618,162 - 23,619,082)
sequence
gaattccttttattctcgtttatagaacttcctttaaaaaatggagaagt
gagaactgagtacatcagatagagtttaggtgtggttctttagggggtgg
ctgttacttgagatattgtttcagcttgaactcctattgtagcccaggct
agtctcaggcttgtgattctcttgcctggctccaagatctcagattacag
gcttgaggtttatacccagcacaagtatctcttcaggaatttacccatgg
tctgtgaacatgaggcgagtaaagtttaatctgaggcatgaatagaagaa
ggaaagatctcaagtctgtaactgaaagcacagtaagttagtacactagc
gtcagcagtgatgtgtgtagcacgcgttacagcgttagtgcactaagctc
tctgtgtctctgcagtttcagaatcttggtgaattggtccacattacatg
gtttttcctattggtgccttatttctttcatttctgtagtccttggagaa
cctgagtataggggaatttataaggtctcctgaagatcctgtgcactcag
aactgttctgaatccacgcactatcattcttaggcatatgtgtagacatt
atttcatgctgtaatactgtcctatcaggcttcctgtgacatagtttata
cgttatacagttaacctgtgtagaacacacaattgaacaactttaatata
tgtgcagccgtgactccagtcagttttaggacatttttcctaccctaaag
tgtcctcatttaaccttcacaccttctacaacttttcctggtctgcatgt
tccacacatctttcaagactggcttattcactctgtgtcttgttagtctt
aggtttagccatattggaagataatgttttaaatacaaactcttgaaaac
ttgtataatttccaacatgtatatattgtataacatattgttccatgtat
acattgtattatgttttaaatcaggtaaacatacccatatcacacattta
tcattgtcatgttgtaaacatttaaaatcccatcttagttttttgatgct
gtatgttatttagaaagggaaataaaataaaggcccatattatagacctc
actagcatccagccatctaataggtagcacattcagagc
gaattcctcggctatttttagagagaaacatttttttgaagcttagcttt
ctgagcaggagagaaatctgtaagcataacagagaagtcactcatgtcac
cctgagcagaagggattctcttccagcagatgctgcgggataaacaggtc
ctcgcaggcatggcacagccctgtccttacccgaggcccccgggaggtgt
ttgtaatggcgtactatagttgtgctggtttttaagctaaaattaatttg
accattgtagtttttaatcctgcctgccccgaagaaaagctgattagaat
ttatccatttttaatgtaacaaaaagaagtttatcgatgagtgggaagca
tgtgttaagatgctcatcgacacttgcagagtgtgcgctagtggtttctg
tgcggcaaaaaggatgtaggagagtgggagaggagttcttcagcgtggac
ttcctggcactcagtgtggccagttctgtgactctctgcagtcctcctct
gtgccccatgacacaagggacacttgtcagaggcccctcatgagtggaag
ctctgttggtttgctgtgccttagaatgtaatcggtcacaaggggctcag
ctatgtggtcacagattcgagttcacatgctaagaaactcaggaagagcc
cagctatgacccgtgtgtgtgtgtgtgtgtgtgtgtgtggcccgcctctc
tactccacctccgccctctggtcctgtagcgctgctctctggctgcctgc
ctgaccctcttaccttcctcctctttgcttcttttagatctagctctcca
aggctttgaccttgacagcggctcagcataagtattgctttgatttcttt
taattacaattacaaaccttctggtttgaggagcccagcagaagcctgtt
gcctgccttcctatgaattcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23751294_23752427
seq2: B6Ng01-232O08.b_43_1181 (reverse)

seq1  GCTCTG-ATGTGCTA-CTATTAGAT-GCTGGATGCTAGTGA-GTCTAT-A  45
      |||||| |||||||| ||||||||| ||||||||||||||| |||||| |
seq2  GCTCTGAATGTGCTACCTATTAGATGGCTGGATGCTAGTGAGGTCTATAA  50

seq1  TATGG--CTTTATTTTATTT-CCTTTCTAAATAACATACAGCATCAAAAA  92
      |||||  ||||||||||||| |||||||||||||||||||||||||||||
seq2  TATGGGCCTTTATTTTATTTCCCTTTCTAAATAACATACAGCATCAAAAA  100

seq1  ACT-AGATGGGATTTTAAATGTTTACAACATGACAATGATAAATGTTGTG  141
      ||| ||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  ACTAAGATGGGATTTTAAATGTTTACAACATGACAATGATAAATG-TGT-  148

seq1  GATATGGGTATGTTTACCCTGATTTAAAACATTATACAATGTATACATGG  191
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  GATATGGGTATGTTTA-CCTGATTTAAAACATAATACAATGTATACATGG  197

seq1  AACAATATGTTATACAATATATACATGTTGGAAATTATACAAGTTTTCAA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGTTATACAATATATACATGTTGGAAATTATACAAGTTTTCAA  247

seq1  GAGTTTTGTATTTAAAACATTATCTTCCAATATGGCTAAACCTAAGACTA  291
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAG-TTTGTATTTAAAACATTATCTTCCAATATGGCTAAACCTAAGACTA  296

seq1  ACAAGACACAGAGTGAATAAGCCAGTCTTGAAAGATGTGTGGAACATGCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACAGAGTGAATAAGCCAGTCTTGAAAGATGTGTGGAACATGCA  346

seq1  GACCAGGAAAAGTTGTAGAAGGTGTGAAGGTTAAATGAGGACACTTTAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAAAAGTTGTAGAAGGTGTGAAGGTTAAATGAGGACACTTTAGG  396

seq1  GTAGGAAAAATGTCCTAAAACTGACTGGAGTCACGGCTGCACATATATTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAAATGTCCTAAAACTGACTGGAGTCACGGCTGCACATATATTA  446

seq1  AAGTTGTTCAATTGTGTGTTCTACACAGGTTAACTGTATAACGTATAAAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCAATTGTGTGTTCTACACAGGTTAACTGTATAACGTATAAAC  496

seq1  TATGTCACAGGAAGCCTGATAGGACAGTATTACAGCATGAAATAATGTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACAGGAAGCCTGATAGGACAGTATTACAGCATGAAATAATGTCT  546

seq1  ACACATATGCCTAAGAATGATAGTGCGTGGATTCAGAACAGTTCTGAGTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGCCTAAGAATGATAGTGCGTGGATTCAGAACAGTTCTGAGTG  596

seq1  CACAGGATCTTCAGGAGACCTTATAAATTCCCCTATACTCAGGTTCTCCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATCTTCAGGAGACCTTATAAATTCCCCTATACTCAGGTTCTCCA  646

seq1  AGGACTACAGAAATGAAAGAAATAAGGCACCAATAGGAAAAACCATGTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACAGAAATGAAAGAAATAAGGCACCAATAGGAAAAACCATGTAA  696

seq1  TGTGGACCAATTCACCAAGATTCTGAAACTGCAGAGACACAGAGAGCTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCAATTCACCAAGATTCTGAAACTGCAGAGACACAGAGAGCTTA  746

seq1  GTGCACTAACGCTGTAACGCGTGCTACACACATCACTGCTGACGCTAGTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTAACGCTGTAACGCGTGCTACACACATCACTGCTGACGCTAGTG  796

seq1  TACTAACTTACTGTGCTTTCAGTTACAGACTTGAGATCTTTCCTTCTTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTTACTGTGCTTTCAGTTACAGACTTGAGATCTTTCCTTCTTCT  846

seq1  ATTCATGCCTCAGATTAAACTTTACTCGCCTCATGTTCACAGACCATGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCCTCAGATTAAACTTTACTCGCCTCATGTTCACAGACCATGGG  896

seq1  TAAATTCCTGAAGAGATACTTGTGCTGGGTATAAACCTCAAGCCTGTAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTGAAGAGATACTTGTGCTGGGTATAAACCTCAAGCCTGTAAT  946

seq1  CTGAGATCTTGGAGCCAGGCAAGAGAATCACAAGCCTGAGACTAGCCTGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTTGGAGCCAGGCAAGAGAATCACAAGCCTGAGACTAGCCTGG  996

seq1  GCTACAATAGGAGTTCAAGCTGAAACAATATCTCAAGTAACAGCCACCCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATAGGAGTTCAAGCTGAAACAATATCTCAAGTAACAGCCACCCC  1046

seq1  CTAAAGAACCACACCTAAACTCTATCTGATGTACTCAGTTCTCACTTCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAACCACACCTAAACTCTATCTGATGTACTCAGTTCTCACTTCTC  1096

seq1  CATTTTTTAAAGGAAGTTCTATAAACGAGAATAAAAGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAAGGAAGTTCTATAAACGAGAATAAAAGGAATTC  1139

seq1: chr8_23618162_23619082
seq2: B6Ng01-232O08.g_68_990

seq1  GAATTCCTCGGCTATTTTTAGAGAGAAACATTTTTTTGAAGCTTAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGCTATTTTTAGAGAGAAACATTTTTTTGAAGCTTAGCTTT  50

seq1  CTGAGCAGGAGAGAAATCTGTAAGCATAACAGAGAAGTCACTCATGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGGAGAGAAATCTGTAAGCATAACAGAGAAGTCACTCATGTCAC  100

seq1  CCTGAGCAGAAGGGATTCTCTTCCAGCAGATGCTGCGGGATAAACAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAGAAGGGATTCTCTTCCAGCAGATGCTGCGGGATAAACAGGTC  150

seq1  CTCGCAGGCATGGCACAGCCCTGTCCTTACCCGAGGCCCCCGGGAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGGCATGGCACAGCCCTGTCCTTACCCGAGGCCCCCGGGAGGTGT  200

seq1  TTGTAATGGCGTACTATAGTTGTGCTGGTTTTTAAGCTAAAATTAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGGCGTACTATAGTTGTGCTGGTTTTTAAGCTAAAATTAATTTG  250

seq1  ACCATTGTAGTTTTTAATCCTGCCTGCCCCGAAGAAAAGCTGATTAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTAGTTTTTAATCCTGCCTGCCCCGAAGAAAAGCTGATTAGAAT  300

seq1  TTATCCATTTTTAATGTAACAAAAAGAAGTTTATCGATGAGTGGGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTTTTAATGTAACAAAAAGAAGTTTATCGATGAGTGGGAAGCA  350

seq1  TGTGTTAAGATGCTCATCGACACTTGCAGAGTGTGCGCTAGTGGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAGATGCTCATCGACACTTGCAGAGTGTGCGCTAGTGGTTTCTG  400

seq1  TGCGGCAAAAAGGATGTAGGAGAGTGGGAGAGGAGTTCTTCAGCGTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCAAAAAGGATGTAGGAGAGTGGGAGAGGAGTTCTTCAGCGTGGAC  450

seq1  TTCCTGGCACTCAGTGTGGCCAGTTCTGTGACTCTCTGCAGTCCTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCACTCAGTGTGGCCAGTTCTGTGACTCTCTGCAGTCCTCCTCT  500

seq1  GTGCCCCATGACACAAGGGACACTTGTCAGAGGCCCCTCATGAGTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCATGACACAAGGGACACTTGTCAGAGGCCCCTCATGAGTGGAAG  550

seq1  CTCTGTTGGTTTGCTGTGCCTTAGAATGTAATCGGTCACAAGGGGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGGTTTGCTGTGCCTTAGAATGTAATCGGTCACAAGGGGCTCAG  600

seq1  CTATGTGGTCACAGATTCGAGTTCACATGCTAAGAAACTCAGGAAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGTCACAGATTCGAGTTCACATGCTAAGAAACTCAGGAAGAGCC  650

seq1  CAGCTATGACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGG-CCGCCTCTC  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCTATGACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCCGCCTCTC  700

seq1  TACTCCACCTCCGCCCTCTGGTCCTGTAGGCGCTGCTCTCTGGCTGCCTG  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACTCCACCTCCGCCCTCTGGTCCTGTA-GCGCTGCTCTCTGGCTGCCTG  749

seq1  CCTGA-CCTCTTACCTTCCTCCTCTTTGCTTC-TTTAGATCTAGCTCTCC  797
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTGACCCTCTTACCTTCCTCCTCTTTGCTTCTTTTAGATCTAGCTCTCC  799

seq1  AGAGGCTTTGACC-TGACAGCGGCCCAGGCAGTAGGTA-TGCTTTGA-TT  844
      | ||||||||||| |||||||||| || ||| || ||| |||||||| ||
seq2  A-AGGCTTTGACCTTGACAGCGGCTCA-GCA-TAAGTATTGCTTTGATTT  846

seq1  CTTTTAATTACAGAGTAC-AACCTTCTGTTTTGAGGAGCCCAGCAGGAAG  893
      |||||||||||| | ||| ||||||||| |||||||||||||||| ||||
seq2  CTTTTAATTACA-ATTACAAACCTTCTGGTTTGAGGAGCCCAGCA-GAAG  894

seq1  CCTGTTGCCTGCCTTCCCTTG-ATTCACA  921
      |||||||||||||||||  || |||||||
seq2  CCTGTTGCCTGCCTTCCTATGAATTCACA  923