BAC Information

Click to search

BAC

Clone NameB6Ng01-233N20
Chromosome8 (Build37)
Map Location 55,208,414 - 55,356,486
singlet/doubletdoublet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233N20.bB6Ng01-233N20.g
ACCGA045798GA045799
length1,0641,152
definitionB6Ng01-233N20.b B6Ng01-233N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,208,414 - 55,209,463)(55,355,321 - 55,356,486)
sequence
gaattcctgtcaaacatcctcaacacaaagagacatttcgttctcagaat
gagaggtttactgcactgaaattttattaatattgtacatgaaaaatttt
gagtcaggtagtgaatttcagaacgtatgactatggcctttgaagtacag
tagcagactggagtcatagtctagggttaggatgtgctgactatgaaaca
aaaccatgagttcagtagcaagcaccaacagcaaaccaaaccctacacag
ctgagccaaatcaaggatagtggcagtgcttaagttcattataatttcat
atcggtggttatcttctgtttctagaatggtgactggagcttttggaagt
caacactttgataatttgtatacacttacttataaataaaattaagtata
ggatagagatttgagaccataagttaaatagtatttattccacatttagc
ttttatggggaaattatgaagaatttagaaaggttgtatttctattatta
tttattaatatcattattattattattattattattattattattattat
tattatctgaagcctttattctgggatttctttttttattggatattttc
tttatttagatttcaattgttatcccctttccccatctcctcctcccccc
agaaacccactatcctatccctcctccccctgtttctgtgagcatgtttc
cccacccatccattcacacctcctcacctttgaattacactggggcattg
aggcttaacccggaccaaggacctcttcttccattgatgccctacaaggc
catcctctgctacatatgcggctggagccatgagtcccacatgtgtactc
tttgggttggtggtttagtccctgggagctctggtttagtctctgggttc
tgcttggcttgatattgttcgtcttcctaatggggcttgcaaaccccttc
agttcctttcagtcctttcttcttacttccttcatttgccggacctccat
gctcatccaatgtatgggcttgtgagcatccaccttctgtacttgttaag
tctctgggcagagc

gaattctcaacaatgcacatagctgaaataacatttctccaacttactgt
ttttgcctttcctctcaaggtctcatctagtggttttgtttaatcaaata
agagcccttttgtagtttctcattctgaatagctcagtgcttttcaatgt
agaaaaaaagttgctagtctgctttgtaaataaccataacatttagaaaa
tactttctaaaaattttacttttttatgtatgtaagtattttgccaacat
ttatatatgtgaaccccatgtgggcctggtgcccagagaggttggaagag
ggcatcagatcctttagagctggagttacagatggttatgagccaatgtg
tggattctgaaaactgaatctgtgttgaatgcaagagctgtaaattcttt
taacccctaaccatctctctagccacaaagaaagaaaaaagccttaaatg
aaaatggccagtttttttttgaaacaaagatttcaaatcaccaactcaaa
aatatgtaccacataatttttctgaatttaatataaaagttgcccattaa
gaacacacatacacatgcaaaagcaaaactggaagatgatgtccactagt
gtgtttttagaaaggccttaaacaaacaaacaaaaaaatagtaaaaagga
caggaccaaagtaacacgcattcagtgtcttgttacttcaagagtcctgc
agcacaaatgttcacatattgctctgaagaaaaaaagcactaagaaatat
agaggaggctgaagaatgttctaaatctcagtcaagaaagtgaaggatgc
caatgaaaatgccaggagcagattgccaagagatacaggctgttctccat
tttccttctatgtctgagatcagtcaaaaataagcctctaaaaaaatgtg
taacagatgaaagcatctttccctgagaaaagaaaacgaacatttcaagc
cactcaatttagacatatctttaaaatgaaggaaaccatatatttaatgt
gtctatattttcctaaatacttatttatgatgagcattctttattaattc
atgcatgcatacttgctttttgtgactagatctattcctatgggaatcat
gtataagcaatgatccgagtggcagaatgaatttacaggcttaaaaacat
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55208414_55209463
seq2: B6Ng01-233N20.b_48_1111

seq1  GAATTCCTGTCAAACATCCTCAACACAAAGAGACATTTCGTTCTCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCAAACATCCTCAACACAAAGAGACATTTCGTTCTCAGAAT  50

seq1  GAGAGGTTTACTGCACTGAAATTTTATTAATATTGTACATGAAAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTTACTGCACTGAAATTTTATTAATATTGTACATGAAAAATTTT  100

seq1  GAGTCAGGTAGTGAATTTCAGAACGTATGACTATGGCCTTTGAAGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGTAGTGAATTTCAGAACGTATGACTATGGCCTTTGAAGTACAG  150

seq1  TAGCAGACTGGAGTCATAGTCTAGGGTTAGGATGTGCTGACTATGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGACTGGAGTCATAGTCTAGGGTTAGGATGTGCTGACTATGAAACA  200

seq1  AAACCATGAGTTCAGTAGCAAGCACCAACAGCAAACCAAACCCTACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGAGTTCAGTAGCAAGCACCAACAGCAAACCAAACCCTACACAG  250

seq1  CTGAGCCAAATCAAGGATAGTGGCAGTGCTTAAGTTCATTATAATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAAATCAAGGATAGTGGCAGTGCTTAAGTTCATTATAATTTCAT  300

seq1  ATCGGTGGTTATCTTCTGTTTCTAGAATGGTGACTGGAGCTTTTGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTGGTTATCTTCTGTTTCTAGAATGGTGACTGGAGCTTTTGGAAGT  350

seq1  CAACACTTTGATAATTTGTATACACTTACTTATAAATAAAATTAAGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTTGATAATTTGTATACACTTACTTATAAATAAAATTAAGTATA  400

seq1  GGATAGAGATTTGAGACCATAAGTTAAATAGTATTTATTCCACATTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGATTTGAGACCATAAGTTAAATAGTATTTATTCCACATTTAGC  450

seq1  TTTTATGGGGAAATTATGAAGAATTTAGAAAGGTTGTATTTCTATTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGGGAAATTATGAAGAATTTAGAAAGGTTGTATTTCTATTATTA  500

seq1  TTTATTAATATCATTATTATTATTATTATTATTATTATTATTATTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATATCATTATTATTATTATTATTATTATTATTATTATTATTAT  550

seq1  TATTATCTGAAGCCTTTATTCTGGGATTTCTTTTTTTATTGGATATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTGAAGCCTTTATTCTGGGATTTCTTTTTTTATTGGATATTTTC  600

seq1  TTTATTTAGATTTCAATTGTTATCCCCTTTCCCCATCTCCTCCTCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGATTTCAATTGTTATCCCCTTTCCCCATCTCCTCCTCCCCCC  650

seq1  AGAAACCCACTATCCTATCCCTCCTCCCCCTGTTTCTGTGAGCATGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCACTATCCTATCCCTCCTCCCCCTGTTTCTGTGAGCATGTTTC  700

seq1  CCCACCCATCCATTCACACCTCCTCACCTTTGAATTACACTGGGGCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCCATTCACACCTCCTCACCTTTGAATTACACTGGGGCATTG  750

seq1  AGGCTTAA-CCGGACCAAGGACCTCTTCTTCCATTGATGCCCTACAAGGC  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAACCCGGACCAAGGACCTCTTCTTCCATTGATGCCCTACAAGGC  800

seq1  CATCCTCTGCTACATATGCGGCTGGAGCCATGAGTCCCACCATGTGTACT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATCCTCTGCTACATATGCGGCTGGAGCCATGAGTCCCA-CATGTGTACT  849

seq1  CTTT-GGTTGGTGGTTTAGTCCCTGGGAGCTCTGGTTTAGTCTCTGGGTT  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGTTTAGTCTCTGGGTT  899

seq1  CTGCTTGG-TTGATATTGTTCGTCTTCCT-ATGGGGC-TGCAAACCCCTT  945
      |||||||| |||||||||||||||||||| ||||||| ||||||||||||
seq2  CTGCTTGGCTTGATATTGTTCGTCTTCCTAATGGGGCTTGCAAACCCCTT  949

seq1  CAGTTCC-TTCAGTCCTTTC-TCTAAC-TCCTCCATT--GCGGACC-CCA  989
      ||||||| |||||||||||| ||| || |||| ||||   |||||| |||
seq2  CAGTTCCTTTCAGTCCTTTCTTCTTACTTCCTTCATTTGCCGGACCTCCA  999

seq1  TGCTCAATCCAATGGATGG--CTGTGAGCATCCACC-TCTGTACTTGTT-  1035
      ||||| |||||||| ||||   |||||||||||||| |||||||||||| 
seq2  TGCTC-ATCCAATGTATGGGCTTGTGAGCATCCACCTTCTGTACTTGTTA  1048

seq1  AGGCTCT-GGCAGAGC  1050
      || |||| ||||||||
seq2  AGTCTCTGGGCAGAGC  1064


seq1: chr8_55355321_55356486
seq2: B6Ng01-233N20.g_64_1215 (reverse)

seq1  CCATGTTTTTAA-CTTGTAAA-TCATCTCTCCAACTCTGATCATTTGCTT  48
      |||||||||||| | |||||| |||| ||| | |||| ||||| ||||||
seq2  CCATGTTTTTAAGCCTGTAAATTCAT-TCTGCCACTCGGATCA-TTGCTT  48

seq1  TTATAACAATGAT--CCATA-GAATAGATCTTAGTCACAAAAA-CAAGTA  94
       ||     |||||  ||||| ||||||||| |||||||||||| ||||||
seq2  ATA----CATGATTCCCATAGGAATAGATC-TAGTCACAAAAAGCAAGTA  93

seq1  TTCCATGCAATGATTTAAATAAAGAATGGCTTCATTCATAAATAAGTATT  144
       | ||||| |||| || |||||||||||   ||| |||||||||||||||
seq2  -TGCATGC-ATGAATT-AATAAAGAATG--CTCA-TCATAAATAAGTATT  137

seq1  TAAGGAAAATATTAAGACACATTTAAATATATGGTTTTCCTTCATTTTTA  194
      | ||||||||||  ||||||| |||||||||||| ||||||||||||| |
seq2  T-AGGAAAATAT--AGACACA-TTAAATATATGG-TTTCCTTCATTTTAA  182

seq1  AGATTATGTCCTAAATTGAGTGGCTTGAAATGTTCGTTTTCTTTTCTCAG  244
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGA-TATGT-CTAAATTGAGTGGCTTGAAATGTTCGTTTTCTTTTCTCAG  230

seq1  GGAAAGATGCTTTCATCTGTTACACATTTTTTTAGAGGCTTATTTTTGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATGCTTTCATCTGTTACACATTTTTTTAGAGGCTTATTTTTGAC  280

seq1  TGATCTCAGACATAGAAGGAAAATGGAGAACAGCCTGTATCTCTTGGCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGACATAGAAGGAAAATGGAGAACAGCCTGTATCTCTTGGCAA  330

seq1  TCTGCTCCTGGCATTTTCATTGGCATCCTTCACTTTCTTGACTGAGATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTGGCATTTTCATTGGCATCCTTCACTTTCTTGACTGAGATTT  380

seq1  AGAACATTCTTCAGCCTCCTCTATATTTCTTAGTGCTTTTTTTCTTCAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTCTTCAGCCTCCTCTATATTTCTTAGTGCTTTTTTTCTTCAGA  430

seq1  GCAATATGTGAACATTTGTGCTGCAGGACTCTTGAAGTAACAAGACACTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGTGAACATTTGTGCTGCAGGACTCTTGAAGTAACAAGACACTG  480

seq1  AATGCGTGTTACTTTGGTCCTGTCCTTTTTACTATTTTTTTGTTTGTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGTGTTACTTTGGTCCTGTCCTTTTTACTATTTTTTTGTTTGTTTG  530

seq1  TTTAAGGCCTTTCTAAAAACACACTAGTGGACATCATCTTCCAGTTTTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCCTTTCTAAAAACACACTAGTGGACATCATCTTCCAGTTTTGC  580

seq1  TTTTGCATGTGTATGTGTGTTCTTAATGGGCAACTTTTATATTAAATTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATGTGTATGTGTGTTCTTAATGGGCAACTTTTATATTAAATTCA  630

seq1  GAAAAATTATGTGGTACATATTTTTGAGTTGGTGATTTGAAATCTTTGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATGTGGTACATATTTTTGAGTTGGTGATTTGAAATCTTTGTT  680

seq1  TCAAAAAAAAACTGGCCATTTTCATTTAAGGCTTTTTTCTTTCTTTGTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAACTGGCCATTTTCATTTAAGGCTTTTTTCTTTCTTTGTGG  730

seq1  CTAGAGAGATGGTTAGGGGTTAAAAGAATTTACAGCTCTTGCATTCAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGATGGTTAGGGGTTAAAAGAATTTACAGCTCTTGCATTCAACA  780

seq1  CAGATTCAGTTTTCAGAATCCACACATTGGCTCATAACCATCTGTAACTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAGTTTTCAGAATCCACACATTGGCTCATAACCATCTGTAACTC  830

seq1  CAGCTCTAAAGGATCTGATGCCCTCTTCCAACCTCTCTGGGCACCAGGCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAAAGGATCTGATGCCCTCTTCCAACCTCTCTGGGCACCAGGCC  880

seq1  CACATGGGGTTCACATATATAAATGTTGGCAAAATACTTACATACATAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGGTTCACATATATAAATGTTGGCAAAATACTTACATACATAAA  930

seq1  AAAGTAAAATTTTTAGAAAGTATTTTCTAAATGTTATGGTTATTTACAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATTTTTAGAAAGTATTTTCTAAATGTTATGGTTATTTACAAA  980

seq1  GCAGACTAGCAACTTTTTTTCTACATTGAAAAGCACTGAGCTATTCAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTAGCAACTTTTTTTCTACATTGAAAAGCACTGAGCTATTCAGAA  1030

seq1  TGAGAAACTACAAAAGGGCTCTTATTTGATTAAACAAAACCACTAGATGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACTACAAAAGGGCTCTTATTTGATTAAACAAAACCACTAGATGA  1080

seq1  GACCTTGAGAGGAAAGGCAAAAACAGTAAGTTGGAGAAATGTTATTTCAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAGAGGAAAGGCAAAAACAGTAAGTTGGAGAAATGTTATTTCAG  1130

seq1  CTATGTGCATTGTTGAGAATTC  1166
      ||||||||||||||||||||||
seq2  CTATGTGCATTGTTGAGAATTC  1152


| Home | SequenceCutter | Blast | Download |