BAC Information

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BAC

Clone NameB6Ng01-233O02
Chromosome8 (Build37)
Map Location 71,334,616 - 71,507,008
singlet/doubletdoublet
Overlap geneInts10, Lpl
Upstream genePsd3, Sh2d4a, LOC665510, 4732435N03Rik
Downstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233O02.bB6Ng01-233O02.g
ACCGA045810GA045811
length265963
definitionB6Ng01-233O02.b B6Ng01-233O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,506,744 - 71,507,008)(71,334,616 - 71,335,558)
sequence
attcaattttcatatcaaacttacaaagtagatactaactctaaagttcc
tctttacaaatgtataaagtgggacccagagagtctgagcagcttacaca
tgtagcttacacagggtagaaaagactattagaagctggtcagactggtt
ttgtgttttgatcctggactttctgcatcaaggtgtagagaacatccttg
tcagcctgcacagagaggatgtctggggcatagcaggaaggaaggaggaa
gggagggagggagga
gaattccttgacaaaggtgagcttgtgctcgttgccgtcaacatctcgtg
atctcttcctgtcacctctcatagctcagtgctgggtctggcactccttt
cctttcataggatgcagttttggtcaggagactattcccctactattcag
gtgaccactcatcccggagcagggccctgttagacagacggagcattgcc
gtcagagttggggtggatgggaaggatggtgcttggtgtctccctgtgtc
tgtatcctgcccatctacttcgtgctgtttcccttctccctgagctgcct
gtgttcagcagtgcagaatacagacaatgtgattttgtctgtcatcagcc
cattgccttggaaaactggagaaagctattatctttcttgagacggaatc
tcactatgtaactctggctggtccggaatttgctatatagacgggactgg
cattgaactggcaagagatcctcctgagtctagctttgctagccaataat
gttttgctttcatgtgacaatggggttcattaatttcctgctaggcagtg
accatgcatcccttgggctcctgtcacatgaccaggcatccccatgtcag
ataagctatgttgtattttctaagagaggacagcctccgtttcttttgtt
ttatttattattgtggatatgtgtgtgatttattttgaaagaaatttttc
tttagtcataaattgtgctttttttaaaaaaagacaaaatggggctagtg
caactacataagacattgggggtgatgcaccgggaagtgtactttcttag
cacataatacatgcttacaagatgcttgccatataaaaattccttgtgtg
gttgggtgaatatcgcggtcagtggggcaaaggcactttgccaactggcc
ctgatgaacctgggactcgaaaggagaaaggagaggaccagtcttgtcct
tgggccctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_71506744_71507008
seq2: B6Ng01-233O02.b_50_314 (reverse)

seq1  TCCTCCCTCCCTCCCTTCCTCCTTCCTTCCTGCTATGCCCCAGACATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCCCTCCCTTCCTCCTTCCTTCCTGCTATGCCCCAGACATCCT  50

seq1  CTCTGTGCAGGCTGACAAGGATGTTCTCTACACCTTGATGCAGAAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCAGGCTGACAAGGATGTTCTCTACACCTTGATGCAGAAAGTCC  100

seq1  AGGATCAAAACACAAAACCAGTCTGACCAGCTTCTAATAGTCTTTTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAACACAAAACCAGTCTGACCAGCTTCTAATAGTCTTTTCTAC  150

seq1  CCTGTGTAAGCTACATGTGTAAGCTGCTCAGACTCTCTGGGTCCCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTAAGCTACATGTGTAAGCTGCTCAGACTCTCTGGGTCCCACTTT  200

seq1  ATACATTTGTAAAGAGGAACTTTAGAGTTAGTATCTACTTTGTAAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTGTAAAGAGGAACTTTAGAGTTAGTATCTACTTTGTAAGTTTG  250

seq1  ATATGAAAATTGAAT  265
      |||||||||||||||
seq2  ATATGAAAATTGAAT  265

seq1: chr8_71334616_71335558
seq2: B6Ng01-233O02.g_65_1027

seq1  GAATTCCTTGACAAAGGTGAGCTTGTGCTCGTTGCCGTCAACATCTCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACAAAGGTGAGCTTGTGCTCGTTGCCGTCAACATCTCGTG  50

seq1  ATCTCTTCCTGTCACCTCTCATAGCTCAGTGCTGGGTCTGGCACTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCCTGTCACCTCTCATAGCTCAGTGCTGGGTCTGGCACTCCTTT  100

seq1  CCTTTCATAGGATGCAGTTTTGGTCAGGAGACTATTCCCCTACTATTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATAGGATGCAGTTTTGGTCAGGAGACTATTCCCCTACTATTCAG  150

seq1  GTGACCACTCATCCCGGAGCAGGGCCCTGTTAGACAGACGGAGCATTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACTCATCCCGGAGCAGGGCCCTGTTAGACAGACGGAGCATTGCC  200

seq1  GTCAGAGTTGGGGTGGATGGGAAGGATGGTGCTTGGTGTCTCCCTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTGGGGTGGATGGGAAGGATGGTGCTTGGTGTCTCCCTGTGTC  250

seq1  TGTATCCTGCCCATCTACTTCGTGCTGTTTCCCTTCTCCCTGAGCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGCCCATCTACTTCGTGCTGTTTCCCTTCTCCCTGAGCTGCCT  300

seq1  GTGTTCAGCAGTGCAGAATACAGACAATGTGATTTTGTCTGTCATCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGCAGTGCAGAATACAGACAATGTGATTTTGTCTGTCATCAGCC  350

seq1  CATTGCCTTGGAAAACTGGAGAAAGCTATTATCTTTCTTGAGACGGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTTGGAAAACTGGAGAAAGCTATTATCTTTCTTGAGACGGAATC  400

seq1  TCACTATGTAACTCTGGCTGGTCCGGAATTTGCTATATAGACGGGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGTAACTCTGGCTGGTCCGGAATTTGCTATATAGACGGGACTGG  450

seq1  CATTGAACTGGCAAGAGATCCTCCTGAGTCTAGCTTTGCTAGCCAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACTGGCAAGAGATCCTCCTGAGTCTAGCTTTGCTAGCCAATAAT  500

seq1  GTTTTGCTTTCATGTGACAATGGGGTTCATTAATTTCCTGCTAGGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTTCATGTGACAATGGGGTTCATTAATTTCCTGCTAGGCAGTG  550

seq1  ACCATGCATCCCTTGGGCTCCTGTCACATGACCAGGCATCCCCATGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCATCCCTTGGGCTCCTGTCACATGACCAGGCATCCCCATGTCAG  600

seq1  ATAAGCTATGTTGTATTTTCTAAGAGAGGACAGCCTCCGTTTCTTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTATGTTGTATTTTCTAAGAGAGGACAGCCTCCGTTTCTTTTGTT  650

seq1  TTATTTATTATTGTGGATATGTGTGTGATT--ATTTGAAAGAAA-TTTTC  697
      ||||||||||||||||||||||||||||||   ||||||||||| |||||
seq2  TTATTTATTATTGTGGATATGTGTGTGATTTATTTTGAAAGAAATTTTTC  700

seq1  TTTAGTCATAAATTGTGCTTTTTTT-AAAAAAGACAAA--TGGGCTAGTG  744
      ||||||||||||||||||||||||| ||||||||||||   |||||||||
seq2  TTTAGTCATAAATTGTGCTTTTTTTAAAAAAAGACAAAATGGGGCTAGTG  750

seq1  CAACTACATAAGACATT-GGGGTGATGCA-CGGGAAGTGTAC-TTCTTAG  791
      ||||||||||||||||| ||||||||||| |||||||||||| |||||||
seq2  CAACTACATAAGACATTGGGGGTGATGCACCGGGAAGTGTACTTTCTTAG  800

seq1  CACATAATACATGCTTAC-AGATGC-TGCCATATAGAAATCC----TGTG  835
      |||||||||||||||||| |||||| ||||||||| |||| |    ||||
seq2  CACATAATACATGCTTACAAGATGCTTGCCATATAAAAATTCCTTGTGTG  850

seq1  GGTTGGTG-ATATAGC-GTCAGT-GGGCAAAGGCAC-TTGCCAACTGG-C  880
      | | |||| |||| || |||||| |||||||||||| ||||||||||| |
seq2  GTTGGGTGAATATCGCGGTCAGTGGGGCAAAGGCACTTTGCCAACTGGCC  900

seq1  CTGATG-ACCTGGGACTCGTAAGGAGAAAGGAGAGGACCAAGTCTTGTCC  929
      |||||| |||||||||||| ||||||||||||||||||| ||||||||||
seq2  CTGATGAACCTGGGACTCGAAAGGAGAAAGGAGAGGACC-AGTCTTGTCC  949

seq1  TTGTGCTCTCCTCC  943
      ||| || |||||||
seq2  TTGGGCCCTCCTCC  963