BAC Information

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BAC

Clone NameB6Ng01-235P03
Chromosome8 (Build37)
Map Location 108,136,389 - 108,289,037
singlet/doubletdoublet
Overlap gene2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
Upstream geneCdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846
Downstream geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235P03.bB6Ng01-235P03.g
ACCGA047294GA047295
length9981,110
definitionB6Ng01-235P03.b B6Ng01-235P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,136,389 - 108,137,386)(108,287,927 - 108,289,037)
sequence
gaattcaggctatgggtggaagaaaacagtcctatcttccgctataaggg
aaaaccctggctgggtaataggacctgatccttttcccttggtccaaggg
aaaggagagacacaggtgcaagtgggctttagggatagccccacttccac
cgcttcgtttcctctctcttctcagcttcttcagagtccttattatccag
tgtcatccattggcacaactcctgtaccccaacctccttcttactcactt
cacacatatagaacccagtctttctttgtgaatcttttctcagcaggctc
atttggacatatttcatttcatgtgtattggtgttttttgcctgtttatg
tctgtgtgtgggtgtcaaatcccctggaactggagttacagaaagttgtg
agctgccatgtgggtgctaggaattgaacctggaacctctggaagagaag
ctaacactcttaacctctgggccatctctccaaacccttgaacaactatt
acagcctcctatagtctctttattctgtccttttatattcattctagtat
tcaactcctttcacaagcgttcctagccacaaaccctgtgtcagcccact
gccgagggaagcccctagtaacctcttacagaagctaagcagactgaggt
tcggtgtccccttagtccaggagaccagtcccgccccatcccggcgggct
gagtcaggaggcaggaactgggcgggcaggaggcgccgagagcagccaga
aaccggggccagagccgctggcagtgagcttggagcccaacggggctggt
accaaaaaccccgggccagcgggacacagtgggtgagcgtgagtcggggg
ccgtccggaacttactatgaactccaaaaagagaggtaggacttggcttg
gagctgcgaagtctccagagatggccacaagggatgcagacgggattctg
ggggcttagagtgcgtgtttcgttgggaatagtttgggttgggggttc
gaattccaatcccaatatatgaggctttggggtccagacatagttagcat
tggtttacataggaatggtctccataggttcatatatgtgaatgtttggt
catcagagagtggtgctgtttgacagggatcaggaggtgtgaccttgttg
cagtaggtgtatccttgaagaactatgttactcagggtgggctttggggt
ttcaattgttcaagccaggcccactgtctgtctgtcgcctgtggatccag
atgtagaactctcagctactctccagtaccatgtcttatacgccaccatg
ctctctaccatgatgataatggactgaacctctgagaatgtaagcaagcc
ccagttagttttctgttataagagttgccatggtcaccgtgtctcttcac
agccatagaacagatctctgttgggttgagaatggtttaggaacggatac
attccttttatcatcccaaacatcaaaggctggcttttgttgtctccctg
acttctaccctcctagttaccagaggaatttctggaaaaattgaaaattt
taaatttaagaccttgggaggctgtgttccaagggtaccaagatgggcta
gttagtttctgttggatcgtaaataagttgattccccaagttttgttggt
tttccaataataaccttcactttcctgccacgcccaaacctttatagata
tgggattgcactgcccaagattacaaaattagcaaaattacaggtaaaaa
aaattgcagttttctctctaggactattaaggggtcaattgtgactctgg
aggaatttgttttgcaacacacacacactcacacacacacacacaaagta
cagagatactcatccaactcggcaccagcagaggagatacagtactggac
caatcagagttaaatttttttcaatagtagatccacaaccccagtagcct
ctagaacataatgtttttttctttcacagaagtccacctagaaggtaggt
taaggtttcagtgcaacaattaaggctatacacctccagtcttctaggtc
ctcaatacctccaggtcctaagccttaatacatgtgggcctttcatagtc
agaacagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108136389_108137386
seq2: B6Ng01-235P03.b_47_1044

seq1  GAATTCAGGCTATGGGTGGAAGAAAACAGTCCTATCTTCCGCTATAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTATGGGTGGAAGAAAACAGTCCTATCTTCCGCTATAAGGG  50

seq1  AAAACCCTGGCTGGGTAATAGGACCTGATCCTTTTCCCTTGGTCCAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTGGCTGGGTAATAGGACCTGATCCTTTTCCCTTGGTCCAAGGG  100

seq1  AAAGGAGAGACACAGGTGCAAGTGGGCTTTAGGGATAGCCCCACTTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGACACAGGTGCAAGTGGGCTTTAGGGATAGCCCCACTTCCAC  150

seq1  CGCTTCGTTTCCTCTCTCTTCTCAGCTTCTTCAGAGTCCTTATTATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCGTTTCCTCTCTCTTCTCAGCTTCTTCAGAGTCCTTATTATCCAG  200

seq1  TGTCATCCATTGGCACAACTCCTGTACCCCAACCTCCTTCTTACTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCATTGGCACAACTCCTGTACCCCAACCTCCTTCTTACTCACTT  250

seq1  CACACATATAGAACCCAGTCTTTCTTTGTGAATCTTTTCTCAGCAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATAGAACCCAGTCTTTCTTTGTGAATCTTTTCTCAGCAGGCTC  300

seq1  ATTTGGACATATTTCATTTCATGTGTATTGGTGTTTTTTGCCTGTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGACATATTTCATTTCATGTGTATTGGTGTTTTTTGCCTGTTTATG  350

seq1  TCTGTGTGTGGGTGTCAAATCCCCTGGAACTGGAGTTACAGAAAGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGGGTGTCAAATCCCCTGGAACTGGAGTTACAGAAAGTTGTG  400

seq1  AGCTGCCATGTGGGTGCTAGGAATTGAACCTGGAACCTCTGGAAGAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATGTGGGTGCTAGGAATTGAACCTGGAACCTCTGGAAGAGAAG  450

seq1  CTAACACTCTTAACCTCTGGGCCATCTCTCCAAACCCTTGAACAACTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTCTTAACCTCTGGGCCATCTCTCCAAACCCTTGAACAACTATT  500

seq1  ACAGCCTCCTATAGTCTCTTTATTCTGTCCTTTTATATTCATTCTAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCTATAGTCTCTTTATTCTGTCCTTTTATATTCATTCTAGTAT  550

seq1  TCAACTCCTTTCACAAGCGTTCCTAGCCACAAACCCTGTGTCAGCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTTTCACAAGCGTTCCTAGCCACAAACCCTGTGTCAGCCCACT  600

seq1  GCCGAGGGAAGCCCCTAGTAACCTCTTACAGAAGCTAAGCAGACTGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGGAAGCCCCTAGTAACCTCTTACAGAAGCTAAGCAGACTGAGGT  650

seq1  TCGGTGTCCCCTTAGTCCAGGAGACCAGTCCCGCCCCATCCCGGCGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTCCCCTTAGTCCAGGAGACCAGTCCCGCCCCATCCCGGCGGGCT  700

seq1  GAGTCAGGAGGCAGGAACTGGGCGGGCAGGAGGCGCCGAGAGCAGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGAGGCAGGAACTGGGCGGGCAGGAGGCGCCGAGAGCAGCCAGA  750

seq1  AACCGGGGCCAGAGCCGCTGGCAGTGAGCTTGGAGCCCAACGGGGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGGGCCAGAGCCGCTGGCAGTGAGCTTGGAGCCCAACGGGGCTGGT  800

seq1  ACCAAAAACCCCGGGCCAGCGGGACACAGTGGGTGAGCGTGAGTCGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAACCCCGGGCCAGCGGGACACAGTGGGTGAGCGTGAGTCGGGGG  850

seq1  CCGTCCGGAACTTACTATGAACTCCAAAAAGAGAGGTAGGACTTGGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCGGAACTTACTATGAACTCCAAAAAGAGAGGTAGGACTTGGCTTG  900

seq1  GAGCTGCGAAGTCTCCAGAGATGGCCACAAGGGATGCAGACGGGATTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCGAAGTCTCCAGAGATGGCCACAAGGGATGCAGACGGGATTCTG  950

seq1  GGGGCTTAGAGTGCGTGTTTCGTTGGGAATAGGTTGGGTTGGGGGTTC  998
      |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGCTTAGAGTGCGTGTTTCGTTGGGAATAGTTTGGGTTGGGGGTTC  998

seq1: chr8_108287927_108289037
seq2: B6Ng01-235P03.g_65_1174 (reverse)

seq1  GTTCTGTCTTGTCTGACTATGGAAAAGGCCCACAACCTTAATAA-GCTAA  49
      |||||||    ||||||||||  |||||||||||    || ||| ||| |
seq2  GTTCTGT----TCTGACTATG--AAAGGCCCACA--TGTATTAAGGCTTA  42

seq1  GACCCTG--AGTA-TGA-GACTTAAGAAGACTGGA-GTGTATAG-CTTAA  93
      |  ||||   ||| ||| ||| | ||||||||||| |||||||| |||||
seq2  GGACCTGGAGGTATTGAGGACCT-AGAAGACTGGAGGTGTATAGCCTTAA  91

seq1  TTGTTCCACTGAAACC-TAACCTACCTTCTAGGTGGACTTCTGTGAAAAG  142
      ||||| |||||||||| |||||||||||||||||||||||||||| ||||
seq2  TTGTTGCACTGAAACCTTAACCTACCTTCTAGGTGGACTTCTGTG-AAAG  140

seq1  AAAAAAACATTATG-TCTAGAGGCTACTGGGGTTGTGGATCTACTATTGA  191
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATTATGTTCTAGAGGCTACTGGGGTTGTGGATCTACTATTGA  190

seq1  AAAAAATTTAACTCTGATTGGTCCAGTACTGTATCTCCTCTGCTGGTGCC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTAACTCTGATTGGTCCAGTACTGTATCTCCTCTGCTGGTGCC  240

seq1  GAGTTGGATGAGTATCTCTGTACTTTGTGTGTGTGTGTGTGAGTGTGTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGATGAGTATCTCTGTACTTTGTGTGTGTGTGTGTGAGTGTGTGT  290

seq1  GTGTTGCAAAACAAATTCCTCCAGAGTCACAATTGACCCCTTAATAGTCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCAAAACAAATTCCTCCAGAGTCACAATTGACCCCTTAATAGTCC  340

seq1  TAGAGAGAAAACTGCAATTTTTTTTACCTGTAATTTTGCTAATTTTGTAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAAAACTGCAATTTTTTTTACCTGTAATTTTGCTAATTTTGTAA  390

seq1  TCTTGGGCAGTGCAATCCCATATCTATAAAGGTTTGGGCGTGGCAGGAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCAGTGCAATCCCATATCTATAAAGGTTTGGGCGTGGCAGGAAA  440

seq1  GTGAAGGTTATTATTGGAAAACCAACAAAACTTGGGGAATCAACTTATTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTTATTATTGGAAAACCAACAAAACTTGGGGAATCAACTTATTT  490

seq1  ACGATCCAACAGAAACTAACTAGCCCATCTTGGTACCCTTGGAACACAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCCAACAGAAACTAACTAGCCCATCTTGGTACCCTTGGAACACAGC  540

seq1  CTCCCAAGGTCTTAAATTTAAAATTTTCAATTTTTCCAGAAATTCCTCTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGGTCTTAAATTTAAAATTTTCAATTTTTCCAGAAATTCCTCTG  590

seq1  GTAACTAGGAGGGTAGAAGTCAGGGAGACAACAAAAGCCAGCCTTTGATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAGGAGGGTAGAAGTCAGGGAGACAACAAAAGCCAGCCTTTGATG  640

seq1  TTTGGGATGATAAAAGGAATGTATCCGTTCCTAAACCATTCTCAACCCAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATGATAAAAGGAATGTATCCGTTCCTAAACCATTCTCAACCCAA  690

seq1  CAGAGATCTGTTCTATGGCTGTGAAGAGACACGGTGACCATGGCAACTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTGTTCTATGGCTGTGAAGAGACACGGTGACCATGGCAACTCT  740

seq1  TATAACAGAAAACTAACTGGGGCTTGCTTACATTCTCAGAGGTTCAGTCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGAAAACTAACTGGGGCTTGCTTACATTCTCAGAGGTTCAGTCC  790

seq1  ATTATCATCATGGTAGAGAGCATGGTGGCGTATAAGACATGGTACTGGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCATGGTAGAGAGCATGGTGGCGTATAAGACATGGTACTGGAG  840

seq1  AGTAGCTGAGAGTTCTACATCTGGATCCACAGGCGACAGACAGACAGTGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGAGAGTTCTACATCTGGATCCACAGGCGACAGACAGACAGTGG  890

seq1  GCCTGGCTTGAACAATTGAAACCCCAAAGCCCACCCTGAGTAACATAGTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTTGAACAATTGAAACCCCAAAGCCCACCCTGAGTAACATAGTT  940

seq1  CTTCAAGGATACACCTACTGCAACAAGGTCACACCTCCTGATCCCTGTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGATACACCTACTGCAACAAGGTCACACCTCCTGATCCCTGTCA  990

seq1  AACAGCACCACTCTCTGATGACCAAACATTCACATATATGAACCTATGGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACCACTCTCTGATGACCAAACATTCACATATATGAACCTATGGA  1040

seq1  GACCATTCCTATGTAAACCAATGCTAACTATGTCTGGACCCCAAAGCCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTCCTATGTAAACCAATGCTAACTATGTCTGGACCCCAAAGCCTC  1090

seq1  ATATATTGGGATTGGAATTC  1111
      ||||||||||||||||||||
seq2  ATATATTGGGATTGGAATTC  1110