BAC Information

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BAC

Clone NameB6Ng01-236B09
Chromosome8 (Build37)
Map Location 101,743,980 - 101,881,794
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneEG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236B09.bB6Ng01-236B09.g
ACCGA047392GA047393
length1,1041,095
definitionB6Ng01-236B09.b B6Ng01-236B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,880,689 - 101,881,794)(101,743,980 - 101,745,067)
sequence
gaattctaggatcacacaggattaataatatgcaggtgtggttttaagga
gtctttttttttttattctttttacactttgatttttatatgaagtaact
tatcctggttcattcccttcacttgtcagaatatctcatggggatccatg
ggcattttttccctaagctgtatcattgaattttggacctagaaaaatgt
ttctttataaatatgacatttttagaggctagagagatgactatgcttct
tgtccagagatttgaatttggatctcagttctcagactgaacaagtcata
aatgactatgactctgcttacaggcagaaaacatgcacacaagcagcata
tacacacaaacacatcaatatatttaaaaatgaaaataaaaagttaatat
cactatctggtcagttttgatttcccatcactgaagatccacaggtcaga
atatatcattttgacagtttatccagtatagtttttgaagacacatatta
ttttaaattgttgaggaaaaaaatctttggagaaatatggaataatttct
tgttatcataaaacatttttatcattttcctctgtggttttcaagacttg
tcatgcagatttcctgccttctgctttccaatagtgtgtattcagacatt
attatgtatttactatgcttcagacatgacctgaaactagcgattcagaa
aaaaagaatttgttttccctgccttaaggacctggcattatattttctcc
caggtgaataactaacactagatgagaaaatgagtaaaaactcacgacag
aagtagagatactgccctcaactccacaagagtgaaacattaatcttcct
tacattgcattgctgtgtgttcttccttacaactctgattttcttttaag
acttaagtttagcttacatatatgagtacttgactgcatatctgtctgtg
tcccatgtgcatgaagtatgctcaaaagctagagagtcttttgatcctct
tgtaatttcagattgttgttggctgtcatgtggggtgcttgaaactgaaa
cccatgtcctctgcagacagctaatgagctttaactgctgacaatttggc
tacg

gaattctaaagacagagaaaacgcaattgtgaaaagtttttgaggccact
tatttccttgaccccatttggcgaaataggacctgaggcccggccaagac
tcactccagcctgtgcaattaccaagtgctttatctacgtttactgctca
aggtctggcatatattgctttctattattcctatttgtgtttgaacagtt
aacttatagtctggtgagaatgaaagcagcgaaacaaaacttgaatccca
ttctgttatttaatatagccctgcaaaactatgttcattgcaattaagcc
atcttggatttctgtttcaagtcaatcataggtgtcaggtgccttataaa
ggagaccataccactgcagtaatattaaaattaataggatggaaggggaa
gttccattggtgatctctcacacagaacaactttgacaaaaattctccaa
atttatattttatatatgcatccttatctatttatgtggcatgcatatac
ctttcaagcaattacaaatgcactttaagttatacatgtttgtgtgtgtg
tgtgtgtgtgtttatcaactactacaactcttgttaaccttttaaaaatc
aaaatctcaaatttgttgagttccagatttctgattctcatcttcttata
aacggaaagtttataataaaatcatatttaccattctgaatttttaatta
aatgttaaccacaaattctcaacaggacatcaggtacaaagatgtctgaa
aaataccttttcctctacttttttttttttttaattggtatagggagttg
tggaatggttcagtgttttctgttagggcatgatgacatgagttcagttc
ccattaaaaatctatgctttaaatgccgggtgtggttttcatatgcttat
taccataggactgggaacagagctggtggcattgagagactcacttatat
attgattctctggtagcctaggttgaagcaccagtgagttctagctttcc
acgccatgagagggcttctgtctagagttagtaagggatgatcaattgag
tatgcatttatttcatcctatgggctccagtgcaccaggtaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101880689_101881794
seq2: B6Ng01-236B09.b_47_1150 (reverse)

seq1  CGTAGCCAAATGGTTCAGCAGTT-AAGCTCATTAGCTGTTCTTGCAGAGG  49
      ||||||||||| | ||||||||| |||||||||||||||   ||||||||
seq2  CGTAGCCAAATTG-TCAGCAGTTAAAGCTCATTAGCTGT--CTGCAGAGG  47

seq1  ACATGGG-TTCAGTTTCAAGCA-CCCACATGACAGCCAACAACAATCTGA  97
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  ACATGGGTTTCAGTTTCAAGCACCCCACATGACAGCCAACAACAATCTGA  97

seq1  AATTACAAGAGGATCAAAAGACTTCTTCTAGCTTTTGAGCATACTTCATG  147
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  AATTACAAGAGGATCAAAAGACT--CTCTAGCTTTTGAGCATACTTCATG  145

seq1  CACATGGGACACAGACAGATATGCAGTCAAGTACTCATATATGTAAGCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGACACAGACAGATATGCAGTCAAGTACTCATATATGTAAGCTA  195

seq1  AACTTAAGTCTTAAAAGAAAATCAGAGTTGTAAGGAAGAACACACAGCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGTCTTAAAAGAAAATCAGAGTTGTAAGGAAGAACACACAGCAA  245

seq1  TGCAATGTAAGGAAGATTAATGTTTCACTCTTGTGGAGTTGAGGGCAGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTAAGGAAGATTAATGTTTCACTCTTGTGGAGTTGAGGGCAGTA  295

seq1  TCTCTACTTCTGTCCTGAGTTTTTACTCATTTTCTCATCTAGTGTTAGTT  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTCTGTCGTGAGTTTTTACTCATTTTCTCATCTAGTGTTAGTT  345

seq1  ATTCACCTGGGAGAAAATATAATGCCAGGTCCTTAAGGCAGGGAAAACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTGGGAGAAAATATAATGCCAGGTCCTTAAGGCAGGGAAAACAA  395

seq1  ATTCTTTTTTTCTGAATCGCTAGTTTCAGGTCATGTCTGAAGCATAGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTTCTGAATCGCTAGTTTCAGGTCATGTCTGAAGCATAGTAA  445

seq1  ATACATAATAATGTCTGAATACACACTATTGGAAAGCAGAAGGCAGGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAATAATGTCTGAATACACACTATTGGAAAGCAGAAGGCAGGAAA  495

seq1  TCTGCATGACAAGTCTTGAAAACCACAGAGGAAAATGATAAAAATGTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGACAAGTCTTGAAAACCACAGAGGAAAATGATAAAAATGTTTT  545

seq1  ATGATAACAAGAAATTATTCCATATTTCTCCAAAGATTTTTTTCCTCAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACAAGAAATTATTCCATATTTCTCCAAAGATTTTTTTCCTCAAC  595

seq1  AATTTAAAATAATATGTGTCTTCAAAAACTATACTGGATAAACTGTCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATAATATGTGTCTTCAAAAACTATACTGGATAAACTGTCAAA  645

seq1  ATGATATATTCTGACCTGTGGATCTTCAGTGATGGGAAATCAAAACTGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATTCTGACCTGTGGATCTTCAGTGATGGGAAATCAAAACTGAC  695

seq1  CAGATAGTGATATTAACTTTTTATTTTCATTTTTAAATATATTGATGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTGATATTAACTTTTTATTTTCATTTTTAAATATATTGATGTGT  745

seq1  TTGTGTGTATATGCTGCTTGTGTGCATGTTTTCTGCCTGTAAGCAGAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTATATGCTGCTTGTGTGCATGTTTTCTGCCTGTAAGCAGAGTC  795

seq1  ATAGTCATTTATGACTTGTTCAGTCTGAGAACTGAGATCCAAATTCAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATTTATGACTTGTTCAGTCTGAGAACTGAGATCCAAATTCAAAT  845

seq1  CTCTGGACAAGAAGCATAGTCATCTCTCTAGCCTCTAAAAATGTCATATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACAAGAAGCATAGTCATCTCTCTAGCCTCTAAAAATGTCATATT  895

seq1  TATAAAGAAACATTTTTCTAGGTCCAAAATTCAATGATACAGCTTAGGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAAACATTTTTCTAGGTCCAAAATTCAATGATACAGCTTAGGGA  945

seq1  AAAAATGCCCATGGATCCCCATGAGATATTCTGACAAGTGAAGGGAATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCCATGGATCCCCATGAGATATTCTGACAAGTGAAGGGAATGA  995

seq1  ACCAGGATAAGTTACTTCATATAAAAATCAAAGTGTAAAAAGAATAAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATAAGTTACTTCATATAAAAATCAAAGTGTAAAAAGAATAAAAA  1045

seq1  AAAAAAGACTCCTTAAAACCACACCTGCATATTATTAATCCTGTGTGATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACTCCTTAAAACCACACCTGCATATTATTAATCCTGTGTGATC  1095

seq1  CTAGAATTC  1106
      |||||||||
seq2  CTAGAATTC  1104


seq1: chr8_101743980_101745067
seq2: B6Ng01-236B09.g_65_1159

seq1  GAATTCTAAAGACAGAGAAAACGCAATTGTGAAAAGTTTTTGAGGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGACAGAGAAAACGCAATTGTGAAAAGTTTTTGAGGCCACT  50

seq1  TATTTCCTTGACCCCATTTGGCGAAATAGGACCTGAGGCCCGGCCAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTGACCCCATTTGGCGAAATAGGACCTGAGGCCCGGCCAAGAC  100

seq1  TCACTCCAGCCTGTGCAATTACCAAGTGCTTTATCTACGTTTACTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAGCCTGTGCAATTACCAAGTGCTTTATCTACGTTTACTGCTCA  150

seq1  AGGTCTGGCATATATTGCTTTCTATTATTCCTATTTGTGTTTGAACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGCATATATTGCTTTCTATTATTCCTATTTGTGTTTGAACAGTT  200

seq1  AACTTATAGTCTGGTGAGAATGAAAGCAGCGAAACAAAACTTGAATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATAGTCTGGTGAGAATGAAAGCAGCGAAACAAAACTTGAATCCCA  250

seq1  TTCTGTTATTTAATATAGCCCTGCAAAACTATGTTCATTGCAATTAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTATTTAATATAGCCCTGCAAAACTATGTTCATTGCAATTAAGCC  300

seq1  ATCTTGGATTTCTGTTTCAAGTCAATCATAGGTGTCAGGTGCCTTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGATTTCTGTTTCAAGTCAATCATAGGTGTCAGGTGCCTTATAAA  350

seq1  GGAGACCATACCACTGCAGTAATATTAAAATTAATAGGATGGAAGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCATACCACTGCAGTAATATTAAAATTAATAGGATGGAAGGGGAA  400

seq1  GTTCCATTGGTGATCTCTCACACAGAACAACTTTGACAAAAATTCTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTGGTGATCTCTCACACAGAACAACTTTGACAAAAATTCTCCAA  450

seq1  ATTTATATTTTATATATGCATCCTTATCTATTTATGTGGCATGCATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTTATATATGCATCCTTATCTATTTATGTGGCATGCATATAC  500

seq1  CTTTCAAGCAATTACAAATGCACTTTAAGTTATACATGTTTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGCAATTACAAATGCACTTTAAGTTATACATGTTTGTGTGTGTG  550

seq1  TGTGTGTGTGTTTATCAACTACTACAACTCTTGTTAACCTTTTAAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTATCAACTACTACAACTCTTGTTAACCTTTTAAAAATC  600

seq1  AAAATCTCAAATTTGTTGAGTTCCAGATTTCTGATTCTCATCTTCTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCAAATTTGTTGAGTTCCAGATTTCTGATTCTCATCTTCTTATA  650

seq1  AACGGAAAGTTTATAATAAAATCATATTTACCATTCTGAATTTTTAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAAAGTTTATAATAAAATCATATTTACCATTCTGAATTTTTAATTA  700

seq1  AATGTTAACCACAAATTCTCAACAGGACATCAGGTACAAAGATGTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAACCACAAATTCTCAACAGGACATCAGGTACAAAGATGTCTGAA  750

seq1  AAATACCTTTTCCTCTAC-TTTTTTTTTTTTTAATTGGTATAGGGAGTTG  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATACCTTTTCCTCTACTTTTTTTTTTTTTTAATTGGTATAGGGAGTTG  800

seq1  TGGAATGGTTCAGTGTTTTCTGTTAGGGCATGATGACATGAGTTCAGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGTTCAGTGTTTTCTGTTAGGGCATGATGACATGAGTTCAGTTC  850

seq1  CCATTAAAAATCTATGCTTTAAATGCCGGGTGTGG-TTTCATATGCTTAT  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATTAAAAATCTATGCTTTAAATGCCGGGTGTGGTTTTCATATGCTTAT  900

seq1  TACCATAGGACTGGGAACAGAGCTGGTGGCATTGAGAGACTCAC-TATAT  947
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACCATAGGACTGGGAACAGAGCTGGTGGCATTGAGAGACTCACTTATAT  950

seq1  ATTGA-TCTCTGGTAGCCTA-GTTGAAGCA-CAGTGAGTTCTAGC-TTCC  993
      ||||| |||||||||||||| ||||||||| |||||||||||||| ||||
seq2  ATTGATTCTCTGGTAGCCTAGGTTGAAGCACCAGTGAGTTCTAGCTTTCC  1000

seq1  ACG-CATGAGAGG--CTCTGTCTAGAGTTAGTAAGGGATGGATCAATTGA  1040
      ||| |||||||||   ||||||||||||||||||||||| ||||||||||
seq2  ACGCCATGAGAGGGCTTCTGTCTAGAGTTAGTAAGGGAT-GATCAATTGA  1049

seq1  GTATGGCATTTAATTTCATCCTATGGCCTCCAAGTGCA-CAAGTAAATT  1088
      |||| |||||| |||||||||||||| |||| |||||| || |||||||
seq2  GTAT-GCATTT-ATTTCATCCTATGGGCTCC-AGTGCACCAGGTAAATT  1095


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