BAC Information

Click to search

BAC

Clone NameB6Ng01-236D03
Chromosome8 (Build37)
Map Location 55,130,228 - 55,293,731
singlet/doubletdoublet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236D03.bB6Ng01-236D03.g
ACCGA047474GA047475
length1,002330
definitionB6Ng01-236D03.b B6Ng01-236D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,130,228 - 55,131,011)(55,293,400 - 55,293,731)
sequence
gaattcttttggatatgtaacaaggagtcaagttgttagatattttagta
actctagctttggaattttacagagctgtcaaactgttttccacagtgct
agacccagcttatactgcatattcaccctcaacagatgaggattcaactt
ctcaagcaatgcctttctttcttcttatttgattataatcttcttgatta
tagtcttcttgagtgtgaagtggtagcaaattgaagtttttctctcattg
taaactttgacattttgtttcctaaactatgtccttagatgacatccaat
ttgtttgttttttaatctgtctctttgtacttttggtggcatcttaatga
agctgttgcccaactcacactaatctaatggtgcaaagattcattttcac
tttcaatacttttagtttgaaactcatacatttatatatttaatcaacct
tggcaagcttttgcatatggtatgaggtagaaacaatctttctttgacag
aagatttcctattatcccagtacaatttggtaaaaacactatggtttttt
cattaaggaacggtgtcagtagtactacctgtaagctcactgtaaatgtg
cgggtgtctttgtatagtctgaattctatttcatttttctatatatttat
cttcatgctagttattaatgtggttttattattctacaactagagattat
gtgttttccttattctttgttaatattatatgggctttttagagtacttc
tgaatttaacttgattttaggcaaatttatctatttctattgaaatgctt
ttattttttatatttatttatttatttatttattattagatattttcttc
acttacattttcaaatgctatcccaaaagtcccctataccctccccctgc
cctgctcccctacccacccactcctgcttcttggccctggtgttcccctg
tactggggcatataaagtttgcaataccaaggggccttctctttcctgta
at

ttttagcaatgttctaatggaactattttgtagaagtattaagatggtct
ttcttcccacaggactgagagtagagttttgcaactaaatgtggattctt
cttgttgcctgtatttctcagagtatgggagcaaggttatgaaaggaaaa
tcttgttggtttatttggggagctcttactccactctatattttggttgg
atagtctattcaggagtcaaaagatgggacttatagttatagatctctct
ctctctctctctctctctctctctctctctctctctctttctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55130228_55131011
seq2: B6Ng01-236D03.b_43_826

seq1  GAATTCTTTTGGATATGTAACAAGGAGTCAAGTTGTTAGATATTTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGATATGTAACAAGGAGTCAAGTTGTTAGATATTTTAGTA  50

seq1  ACTCTAGCTTTGGAATTTTACAGAGCTGTCAAACTGTTTTCCACAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCTTTGGAATTTTACAGAGCTGTCAAACTGTTTTCCACAGTGCT  100

seq1  AGACCCAGCTTATACTGCATATTCACCCTCAACAGATGAGGATTCAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGCTTATACTGCATATTCACCCTCAACAGATGAGGATTCAACTT  150

seq1  CTCAAGCAATGCCTTTCTTTCTTCTTATTTGATTATAATCTTCTTGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAATGCCTTTCTTTCTTCTTATTTGATTATAATCTTCTTGATTA  200

seq1  TAGTCTTCTTGAGTGTGAAGTGGTAGCAAATTGAAGTTTTTCTCTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTTGAGTGTGAAGTGGTAGCAAATTGAAGTTTTTCTCTCATTG  250

seq1  TAAACTTTGACATTTTGTTTCCTAAACTATGTCCTTAGATGACATCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGACATTTTGTTTCCTAAACTATGTCCTTAGATGACATCCAAT  300

seq1  TTGTTTGTTTTTTAATCTGTCTCTTTGTACTTTTGGTGGCATCTTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTAATCTGTCTCTTTGTACTTTTGGTGGCATCTTAATGA  350

seq1  AGCTGTTGCCCAACTCACACTAATCTAATGGTGCAAAGATTCATTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGCCCAACTCACACTAATCTAATGGTGCAAAGATTCATTTTCAC  400

seq1  TTTCAATACTTTTAGTTTGAAACTCATACATTTATATATTTAATCAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATACTTTTAGTTTGAAACTCATACATTTATATATTTAATCAACCT  450

seq1  TGGCAAGCTTTTGCATATGGTATGAGGTAGAAACAATCTTTCTTTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCTTTTGCATATGGTATGAGGTAGAAACAATCTTTCTTTGACAG  500

seq1  AAGATTTCCTATTATCCCAGTACAATTTGGTAAAAACACTATGGTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCCTATTATCCCAGTACAATTTGGTAAAAACACTATGGTTTTTT  550

seq1  CATTAAGGAACGGTGTCAGTAGTACTACCTGTAAGCTCACTGTAAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGAACGGTGTCAGTAGTACTACCTGTAAGCTCACTGTAAATGTG  600

seq1  CGGGTGTCTTTGTATAGTCTGAATTCTATTTCATTTTTCTATATATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTCTTTGTATAGTCTGAATTCTATTTCATTTTTCTATATATTTAT  650

seq1  CTTCATGCTAGTTATTAATGTGGTTTTATTATTCTACAACTAGAGATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTAGTTATTAATGTGGTTTTATTATTCTACAACTAGAGATTAT  700

seq1  GTGTTTTCCTTATTCTTTGTTAATATTATATGGGCTTTTTAGAGTACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCCTTATTCTTTGTTAATATTATATGGGCTTTTTAGAGTACTTC  750

seq1  TGAATTTAACTTGATTTTAGGCAAATTTATCTAT  784
      ||||||||||||||||||||||||||||||||||
seq2  TGAATTTAACTTGATTTTAGGCAAATTTATCTAT  784


seq1: chr8_55293400_55293731
seq2: B6Ng01-236D03.g_74_403 (reverse)

seq1  ACATACACACACACACACACACACACACACACACACACAGAAAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  ACATACACACACACACACACACACACACACACACACACAGAA--AGAGAG  48

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTATAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTATAACTAT  98

seq1  AAGTCCCATCTTTTGACTCCTGAATAGACTATCCAACCAAAATATAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCATCTTTTGACTCCTGAATAGACTATCCAACCAAAATATAGAGT  148

seq1  GGAGTAAGAGCTCCCCAAATAAACCAACAAGATTTTCCTTTCATAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGAGCTCCCCAAATAAACCAACAAGATTTTCCTTTCATAACCTT  198

seq1  GCTCCCATACTCTGAGAAATACAGGCAACAAGAAGAATCCACATTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATACTCTGAGAAATACAGGCAACAAGAAGAATCCACATTTAGTT  248

seq1  GCAAAACTCTACTCTCAGTCCTGTGGGAAGAAAGACCATCTTAATACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTCTACTCTCAGTCCTGTGGGAAGAAAGACCATCTTAATACTTC  298

seq1  TACAAAATAGTTCCATTAGAACATTGCTAAAA  332
      ||||||||||||||||||||||||||||||||
seq2  TACAAAATAGTTCCATTAGAACATTGCTAAAA  330


| Home | SequenceCutter | Blast | Download |