BAC Information

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BAC

Clone NameB6Ng01-236H21
Chromosome8 (Build37)
Map Location 51,077,136 - 51,252,407
singlet/doubletdoublet
Overlap geneEG667495
Upstream geneLOC100039866, 4930555F03Rik, LOC100039919
Downstream geneLOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236H21.bB6Ng01-236H21.g
ACCGA047697GA047698
length1,1661,076
definitionB6Ng01-236H21.b B6Ng01-236H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,077,136 - 51,078,308)(51,251,325 - 51,252,407)
sequence
gaattcatactaaactgcaagtttctagcattcatacctttatatttatc
tattgtcttacatatgcttgtaagtatctcaaaattctgatgtgtctttg
tttctctttgtttctatctgtctgctgatgatgctgtctctgtttctgtg
tctattgttctgtctctctctttctctctctgtctctgtccttttttcca
tctcatatagccaaaactggccttgaatttgctatattgctgaggatagc
ctaaaaattatgacatgaatgaattatgggaagatgataccacatctggt
agttgttcagggtgtcaccaaggacttcccatatcctatgcaaacactac
catatgagctgtatctccagtagcccctgtgctcaaacacttactgatac
ggtgctagaatattataatttatgtctcctatgtagtaggtccatgagtt
cagatattgtacattctttaatactacttgactgttacagatattggggt
ttttataataacatatttctgcacagctattctcatacaatggatttaca
tgtgtttataaacacctggcctcattgacataagatttttagtttttcaa
ttaatcaaatatgcagatttttattaaaatagaattgatgaaattcaaat
acaaataaaggggagcttattggcttacctaagtgatataggttatacta
gcctattcttagtcaagttcagaactagaattttgaggttttattaaata
ttttgatattactactatttgcagtatctaaaagtaaatacatactttaa
aagcttagcattttgttatatgatttttctatgaaagtatttttcaaaag
aaaataatctatgaaaattttcaattctaaataaaataattcaaattacc
tccctaggtttataccctttctcatatatagtgcctccaaggaatcaagt
agttgggaacatgttaactacatgatttaaattaccctgcatcatttaac
caaaaaatttaattgaaaaaaatttagaaatcatgttcctctccataatg
ttgctactggggccacaaatgagctgagctttatcagagtccttgtttct
acattaatctggattgctgtaaatatcatgcacttacatgttgcattcaa
tctcttaatttctctt
gaattcttgcatctgagctggcaagagactcaaacagactctctcagaag
ggcttccttcccatcctacagctttctcattttttcctttctatcccatc
tcacagcctaacttctttgttctgctcctcagaagttctgcagttatcag
gccctctcagatacacacagagaaaaagtttctatatttcctatttccca
attcacaaatatgagcaaatcaataaaaatcattcaaaggttagaagaat
gggagagttataaagacaaggattaaacacacacacacatacacacacac
acacacacacacacacaggcacacacacaaagtcaaaaattgacttcaat
gcaattttacaacaattcacagagaaataatccaatgtaaattaatatta
tcagggcagtaattcattcttcaaacaagaagaggcattcatttgaagta
gcttcattgagtaaaagtgaagagccaacttttgtctattaatttcaaca
aagacctagcagaatggccacagaaaagaatgatgacaagcggggcgtgg
tggcacatgcctttaatcccagcactcgggaggcagaggcaggtggattt
ctgagttcgaggccagcctggtctacaaaatgagttccaggacagccagg
gctacacagagaaaccctgtctcaaaaaaaaaaaaaatgatgacaagaag
agcctttgtaccatcagcacggtggtagctagggaatgtcccatctccac
tcacaaactgtctaatgggcgcaattgaagacaccatttttatagtaaat
ttgtgtgtttctttgggcattctgaggggcatgaactctgaaacccatta
gaccacaaacatcagtgccttatttatcataggaaacccacaatatataa
taattaatgtaaatgaatgaaaagctagctaagtgatgggaaggagacag
ctgaagggaaggagcgtgggtgcctctggggaaacagaactgagaggaac
agacccttcaggagcatttttttcccatatactctgtactaccactatta
atgactgtgtgttatagtatgtagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51077136_51078308
seq2: B6Ng01-236H21.b_49_1214

seq1  GAATTCATACTAAACTGCAAGTTTCTAGCATTCATACCTTTATATTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTAAACTGCAAGTTTCTAGCATTCATACCTTTATATTTATC  50

seq1  TATTGTCTTACATATGCTTGTAAGTATCTCAAAATTCTGATGTGTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTACATATGCTTGTAAGTATCTCAAAATTCTGATGTGTCTTTG  100

seq1  TTTCTCTTTGTTTCTATCTGTCTGCTGATGATGCTGTCTCTGTTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTGTTTCTATCTGTCTGCTGATGATGCTGTCTCTGTTTCTGTG  150

seq1  TCTATTGTTCTGTCTCTCTCTTTCTCTCTCTGTCTCTGTCCTTTTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTCTGTCTCTCTCTTTCTCTCTCTGTCTCTGTCCTTTTTTCCA  200

seq1  TCTCATATAGCCAAAACTGGCCTTGAATTTGCTATATTGCTGAGGATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATAGCCAAAACTGGCCTTGAATTTGCTATATTGCTGAGGATAGC  250

seq1  CTAAAAATTATGACATGAATGAATTATGGGAAGATGATACCACATCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTATGACATGAATGAATTATGGGAAGATGATACCACATCTGGT  300

seq1  AGTTGTTCAGGGTGTCACCAAGGACTTCCCATATCCTATGCAAACACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCAGGGTGTCACCAAGGACTTCCCATATCCTATGCAAACACTAC  350

seq1  CATATGAGCTGTATCTCCAGTAGCCCCTGTGCTCAAACACTTACTGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGCTGTATCTCCAGTAGCCCCTGTGCTCAAACACTTACTGATAC  400

seq1  GGTGCTAGAATATTATAATTTATGTCTCCTATGTAGTAGGTCCATGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAGAATATTATAATTTATGTCTCCTATGTAGTAGGTCCATGAGTT  450

seq1  CAGATATTGTACATTCTTTAATACTACTTGACTGTTACAGATATTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTGTACATTCTTTAATACTACTTGACTGTTACAGATATTGGGGT  500

seq1  TTTTATAATAACATATTTCTGCACAGCTATTCTCATACAATGGATTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATAACATATTTCTGCACAGCTATTCTCATACAATGGATTTACA  550

seq1  TGTGTTTATAAACACCTGGCCTCATTGACATAAGATTTTTAGTTTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATAAACACCTGGCCTCATTGACATAAGATTTTTAGTTTTTCAA  600

seq1  TTAATCAAATATGCAGATTTTTATTAAAATAGAATTGATGAAATTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAATATGCAGATTTTTATTAAAATAGAATTGATGAAATTCAAAT  650

seq1  ACAAATAAAGGGGAGCTTATTGGCTTACCTAAGTGATATAGGTTATACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAGGGGAGCTTATTGGCTTACCTAAGTGATATAGGTTATACTA  700

seq1  GCCTATTCTTAGTCAAGTTCAGAACTAGAATTTTGAGGTTTTATTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTCTTAGTCAAGTTCAGAACTAGAATTTTGAGGTTTTATTAAATA  750

seq1  TTTTGATATTACTACTATTTGCAGTATCTAAAAGTAAATACATACTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATTACTACTATTTGCAGTATCTAAAAGTAAATACATACTTTAA  800

seq1  AAGCTTAGCATTTTGTTATATGA-TTTTCTATGAAAGTATTTTTCAAAAG  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCTTAGCATTTTGTTATATGATTTTTCTATGAAAGTATTTTTCAAAAG  850

seq1  AAAATAATCTATGAAAATTTTCAATTCTAAATAAAATAATTCAAATTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCTATGAAAATTTTCAATTCTAAATAAAATAATTCAAATTACC  900

seq1  TCCCTAGGTTTATACCCTTTCTCATATATAGTGCCTCCAAGGAATCAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGTTTATACCCTTTCTCATATATAGTGCCTCCAAGGAATCAAGT  950

seq1  AGTTGGGAACATGTTAACTACATGATTTAAATTACCCTGCATCATTTAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAACATGTTAACTACATGATTTAAATTACCCTGCATCATTTAAC  1000

seq1  CAAAAAAATTTAATTGAAAAAAATTTAAGAAAATCATGTTCCTCTCCAAT  1049
      | |||||||||||||||||||||||||   ||||||||||||||||||  
seq2  C-AAAAAATTTAATTGAAAAAAATTTA--GAAATCATGTTCCTCTCCA--  1045

seq1  AAATGTTGCTACCTGGGGCACAAATGAGCTGGAGGCTTTATCAGAAGTCC  1099
       |||||||||||  ||| |||||||||||||   |||||||||| |||||
seq2  TAATGTTGCTACTGGGGCCACAAATGAGCTG--AGCTTTATCAG-AGTCC  1092

seq1  TTTTGTTTCTACATTAATCTTGGATTTGCTGTAAATAATACATGCACTTA  1149
        ||||||||||||||||| |||| ||||||||||||   ||||||||||
seq2  --TTGTTTCTACATTAATC-TGGA-TTGCTGTAAATA--TCATGCACTTA  1136

seq1  CTATGTTGCTTT-------TCCATTTCTCTT  1173
      | ||||||| ||       |  |||||||||
seq2  C-ATGTTGCATTCAATCTCTTAATTTCTCTT  1166

seq1: chr8_51251325_51252407
seq2: B6Ng01-236H21.g_64_1139 (reverse)

seq1  TTCTAACATACTATAACACACAGTCATTTTAATAGTGGTAGTACAGAAGT  50
      |||| |||||||||||||||||||||  |||||||||||||||||| |||
seq2  TTCT-ACATACTATAACACACAGTCA--TTAATAGTGGTAGTACAG-AGT  46

seq1  ATAATGGGAAAAAATGCTCCCTGAAGGGTCCTTGTTCCTCTCAGTTCTGT  100
      |||  || |||||||||| |||||||||||  ||||||||||||||||||
seq2  ATATGGGAAAAAAATGCT-CCTGAAGGGTC--TGTTCCTCTCAGTTCTGT  93

seq1  TT-CCCAGAGGCACCCACGCTCCTTCCCTTCAGCTGTCTCCTTCCCATCA  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGAGGCACCCACGCTCCTTCCCTTCAGCTGTCTCCTTCCCATCA  143

seq1  CTTAGCTAGCTTTTTCATTCATTTACATTAATTATTATATATTGTGGGTT  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGC-TTTTCATTCATTTACATTAATTATTATATATTGTGGGTT  192

seq1  TCCTATGATAAATAAGGCACTGATGTTTGTGGTCTAATGGGTTTCAGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGATAAATAAGGCACTGATGTTTGTGGTCTAATGGGTTTCAGAGT  242

seq1  TCATGCCCCTCAGAATGCCCAAAGAAACACACAAATTTACTATAAAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCCTCAGAATGCCCAAAGAAACACACAAATTTACTATAAAAATG  292

seq1  GTGTCTTCAATTGCGCCCATTAGACAGTTTGTGAGTGGAGATGGGACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCAATTGCGCCCATTAGACAGTTTGTGAGTGGAGATGGGACATT  342

seq1  CCCTAGCTACCACCGTGCTGATGGTACAAAGGCTCTTCTTGTCATCATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTACCACCGTGCTGATGGTACAAAGGCTCTTCTTGTCATCATTT  392

seq1  TTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  442

seq1  CTCATTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCT  492

seq1  GCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCCGCTTGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCCGCTTGTC  542

seq1  ATCATTCTTTTCTGTGGCCATTCTGCTAGGTCTTTGTTGAAATTAATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTTTCTGTGGCCATTCTGCTAGGTCTTTGTTGAAATTAATAGA  592

seq1  CAAAAGTTGGCTCTTCACTTTTACTCAATGAAGCTACTTCAAATGAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTGGCTCTTCACTTTTACTCAATGAAGCTACTTCAAATGAATGC  642

seq1  CTCTTCTTGTTTGAAGAATGAATTACTGCCCTGATAATATTAATTTACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTGTTTGAAGAATGAATTACTGCCCTGATAATATTAATTTACAT  692

seq1  TGGATTATTTCTCTGTGAATTGTTGTAAAATTGCATTGAAGTCAATTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTTCTCTGTGAATTGTTGTAAAATTGCATTGAAGTCAATTTTT  742

seq1  GACTTTGTGTGTGTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTGTGTGTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGT  792

seq1  GTGTGTGTTTAATCCTTGTCTTTATAACTCTCCCATTCTTCTAACCTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTAATCCTTGTCTTTATAACTCTCCCATTCTTCTAACCTTTG  842

seq1  AATGATTTTTATTGATTTGCTCATATTTGTGAATTGGGAAATAGGAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTTATTGATTTGCTCATATTTGTGAATTGGGAAATAGGAAATA  892

seq1  TAGAAACTTTTTCTCTGTGTGTATCTGAGAGGGCCTGATAACTGCAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTTTTCTCTGTGTGTATCTGAGAGGGCCTGATAACTGCAGAAC  942

seq1  TTCTGAGGAGCAGAACAAAGAAGTTAGGCTGTGAGATGGGATAGAAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGAGCAGAACAAAGAAGTTAGGCTGTGAGATGGGATAGAAAGGA  992

seq1  AAAAATGAGAAAGCTGTAGGATGGGAAGGAAGCCCTTCTGAGAGAGTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGAAAGCTGTAGGATGGGAAGGAAGCCCTTCTGAGAGAGTCTG  1042

seq1  TTTGAGTCTCTTGCCAGCTCAGATGCAAGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTCTTGCCAGCTCAGATGCAAGAATTC  1076